Rmu_sc0007131.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007131.1
OG0000187
Physical Location & Seq
Reverse (-)
30560 .. 32682
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007131.1_g000010.1.cds

Sequence Viewer

Length: 885 bp
atgagttccattgatgccattgttgctaggctagccttatctcttgttatcactgagggaaagaaaccggttgatctctggcctacacacggccaagggatgttccacaatgcatggcggattaatggatctttgcaggtggaggaggcagaaggccaacgggtgctattcaccttatcggaccctacagacagggtttgcatctggaagggtgcttcgtgggggtataatcatgccttggtggcgctggcatgctatgatagtgtgatgcctgtggagaaggtccctctaaccacgacatcatattggatcactctgcagggcattccttttgcttttaggtcagaaagggtgatgaccatgatcggctacacccttggggactttcagaaaattgacaagatcgggaagaaatccggaaagttatccagggcgttggaggaagatgatgaagaagaggagcggattgtgttggggtcgcagcgagtagcagcgctagcaatccatgctggcggactacaattgaatactgggtcgacggtaaggctgtcaatgggtcatgtcgggttgggttcgtgtcgggtcaaggtggtgatccgtgagctgcaagaccatgccatgacactagaacaggtcactggcaagcataggggcctgtcagatgaggggataaccatttccccaaagaaaatgaagcttagctttgttgttgataagcataacctgaacctggaagtggaaagccttggattggtttcactgccagacgaaggcagttctggtagtgggaagaggaatagaggttgtcctgctggtagcaagaataaactgccatatcgggagaagaagaaggatacaacatctaataagaccaggaaggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

294

Amino Acids

32.33

Weight (kDa)

9.06

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
AccBSI CCGCTC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 536
AccIII TCCGGA 1 cut(s) 416
AciI CCGC 3 cut(s) 118, 463, 513
AclWI GGATC 3 cut(s) 136, 317, 589
AcoI YGGCCR 1 cut(s) 91
AfeI AGCGCT 1 cut(s) 495
AfiI CCNNNNNNNGG 5 cut(s) 89, 730, 736, 751, 770
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 526
AjnI CCWGG 3 cut(s) 428, 729, 872
AluBI AGCT 3 cut(s) 604, 697, 702
AluI AGCT 3 cut(s) 604, 697, 702
AlwI GGATC 3 cut(s) 136, 317, 589
Aor13HI TCCGGA 1 cut(s) 416
Aor51HI AGCGCT 1 cut(s) 495
AoxI GGCC 4 cut(s) 80, 91, 154, 652
ApeKI GCWGC 3 cut(s) 481, 491, 604
AseI ATTAAT 1 cut(s) 123
AsiGI ACCGGT 1 cut(s) 67
AspLEI GCGC 2 cut(s) 247, 496
AspS9I GGNCC 3 cut(s) 181, 283, 652
AsuHPI GGTGA 3 cut(s) 163, 364, 604
AsuNHI GCTAGC 2 cut(s) 31, 496
AvaII GGWCC 2 cut(s) 181, 283
BbvI GCAGC 3 cut(s) 493, 503, 591
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 3 cut(s) 430, 731, 874
BciVI GTATCC 1 cut(s) 847
BfaI CTAG 4 cut(s) 27, 32, 497, 626
BfmI CTRYAG 2 cut(s) 186, 317
BfoI RGCGCY 2 cut(s) 248, 497
BfuAI ACCTGC 1 cut(s) 127
BfuI GTATCC 1 cut(s) 847
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 482, 492, 605
BlpI GCTNAGC 1 cut(s) 698
BlsI GCNGC 3 cut(s) 483, 493, 606
Bme1390I CCNGG 3 cut(s) 430, 731, 874
Bme18I GGWCC 2 cut(s) 181, 283
BmgT120I GGNCC 3 cut(s) 181, 283, 652
BmiI GGNNCC 3 cut(s) 183, 285, 653
BmrFI CCNGG 3 cut(s) 430, 731, 874
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 3 cut(s) 4, 210, 258
BmtI GCTAGC 2 cut(s) 35, 500
BmuI ACTGGG 1 cut(s) 540
Bpu1102I GCTNAGC 1 cut(s) 698
BsaJI CCNNGG 5 cut(s) 94, 237, 376, 429, 745
BsaWI WCCGGW 2 cut(s) 67, 416
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 730, 736, 751, 770
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 535, 643
BseAI TCCGGA 1 cut(s) 416
BseBI CCWGG 3 cut(s) 430, 731, 874
BseDI CCNNGG 5 cut(s) 94, 237, 376, 429, 745
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 5 cut(s) 89, 730, 736, 751, 770
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 535, 643
BseRI GAGGAG 2 cut(s) 158, 473
BseXI GCAGC 3 cut(s) 493, 503, 591
BshFI GGCC 4 cut(s) 82, 93, 156, 654
BshTI ACCGGT 1 cut(s) 67
BsiSI CCGG 2 cut(s) 68, 417
BslFI GGGAC 2 cut(s) 269, 395
BslI CCNNNNNNNGG 5 cut(s) 89, 730, 736, 751, 770
BsmFI GGGAC 2 cut(s) 269, 395
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 4 cut(s) 82, 93, 156, 654
Bsp13I TCCGGA 1 cut(s) 416
Bsp143I GATC 6 cut(s) 73, 128, 309, 363, 402, 594
Bsp1720I GCTNAGC 1 cut(s) 698
BspACI CCGC 3 cut(s) 118, 463, 513
BspANI GGCC 4 cut(s) 82, 93, 156, 654
BspCNI CTCAG 1 cut(s) 46
BspEI TCCGGA 1 cut(s) 416
BspLI GGNNCC 3 cut(s) 183, 285, 653
BspMAI CTGCAG 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 127
BspOI GCTAGC 2 cut(s) 35, 500
BspPI GGATC 3 cut(s) 136, 317, 589
BsrBI CCGCTC 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 2 cut(s) 535, 643
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 5 cut(s) 94, 237, 376, 429, 745
BssMI GATC 6 cut(s) 73, 128, 309, 363, 402, 594
BssT1I CCWWGG 4 cut(s) 94, 237, 376, 745
Bst2UI CCWGG 3 cut(s) 430, 731, 874
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 2 cut(s) 450, 785
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 6 cut(s) 33, 249, 253, 498, 511, 644
BstDEI CTNAG 2 cut(s) 54, 698
BstF5I GGATG 1 cut(s) 105
BstH2I RGCGCY 2 cut(s) 248, 497
BstHHI GCGC 2 cut(s) 247, 496
BstKTI GATC 6 cut(s) 76, 131, 312, 366, 405, 597
BstMBI GATC 6 cut(s) 73, 128, 309, 363, 402, 594
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 242, 497, 506
BstNI CCWGG 3 cut(s) 430, 731, 874
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 3 cut(s) 428, 729, 872
BstSFI CTRYAG 2 cut(s) 186, 317
BstV1I GCAGC 3 cut(s) 493, 503, 591
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 1 cut(s) 128
BsuI GTATCC 1 cut(s) 847
BsuRI GGCC 4 cut(s) 82, 93, 156, 654
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 758
BtsIMutI CAGTG 3 cut(s) 51, 636, 758
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 6 cut(s) 33, 249, 253, 498, 511, 644
CfoI GCGC 2 cut(s) 247, 496
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 3 cut(s) 181, 283, 652
CspAI ACCGGT 1 cut(s) 67
CviAII CATG 8 cut(s) 114, 233, 252, 361, 506, 560, 614, 619
DdeI CTNAG 2 cut(s) 54, 698
DpnI GATC 6 cut(s) 75, 130, 311, 365, 404, 596
DpnII GATC 6 cut(s) 73, 128, 309, 363, 402, 594
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 450, 785
EarI CTCTTC 2 cut(s) 450, 785
EciI GGCGGA 2 cut(s) 133, 528
Eco130I CCWWGG 4 cut(s) 94, 237, 376, 745
Eco47I GGWCC 2 cut(s) 181, 283
Eco47III AGCGCT 1 cut(s) 495
EcoO109I RGGNCCY 2 cut(s) 283, 652
EcoRII CCWGG 3 cut(s) 428, 729, 872
EcoT14I CCWWGG 4 cut(s) 94, 237, 376, 745
EcoT22I ATGCAT 1 cut(s) 115
ErhI CCWWGG 4 cut(s) 94, 237, 376, 745
FaeI CATG 8 cut(s) 117, 236, 255, 364, 509, 563, 617, 622
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FaqI GGGAC 2 cut(s) 269, 395
FatI CATG 8 cut(s) 113, 232, 251, 360, 505, 559, 613, 618
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 3 cut(s) 482, 492, 605
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 482, 492, 605
FspBI CTAG 4 cut(s) 27, 32, 497, 626
GlaI GCGC 2 cut(s) 246, 495
GluI GCNGC 3 cut(s) 482, 492, 605
HaeII RGCGCY 2 cut(s) 248, 497
HaeIII GGCC 4 cut(s) 82, 93, 156, 654
HapII CCGG 2 cut(s) 68, 417
HhaI GCGC 2 cut(s) 247, 496
Hin1II CATG 8 cut(s) 117, 236, 255, 364, 509, 563, 617, 622
Hin6I GCGC 2 cut(s) 245, 494
HinP1I GCGC 2 cut(s) 245, 494
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 1 cut(s) 695
HpaII CCGG 2 cut(s) 68, 417
HphI GGTGA 3 cut(s) 163, 364, 604
Hpy166II GTNNAC 1 cut(s) 537
Hpy188I TCNGA 4 cut(s) 181, 346, 390, 661
Hpy188III TCNNGA 4 cut(s) 205, 406, 417, 839
Hpy8I GTNNAC 1 cut(s) 537
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 6 cut(s) 146, 202, 274, 764, 844, 871
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4V TGCA 5 cut(s) 113, 136, 201, 319, 607
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 242, 497, 506
HpyF3I CTNAG 2 cut(s) 54, 698
Hsp92II CATG 8 cut(s) 117, 236, 255, 364, 509, 563, 617, 622
HspAI GCGC 2 cut(s) 245, 494
Kpn2I TCCGGA 1 cut(s) 416
Kzo9I GATC 6 cut(s) 73, 128, 309, 363, 402, 594
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 3 cut(s) 493, 503, 591
LweI GCATC 3 cut(s) 4, 210, 258
MaeI CTAG 4 cut(s) 27, 32, 497, 626
MaeIII GTNAC 1 cut(s) 634
MalI GATC 6 cut(s) 75, 130, 311, 365, 404, 596
MbiI CCGCTC 1 cut(s) 463
MboI GATC 6 cut(s) 73, 128, 309, 363, 402, 594
MboII GAAGA 7 cut(s) 421, 455, 464, 467, 802, 856, 859
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 1 cut(s) 128
MluCI AATT 2 cut(s) 393, 521
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 9 cut(s) 49, 136, 139, 297, 433, 451, 658, 786, 794
Mph1103I ATGCAT 1 cut(s) 115
MroI TCCGGA 1 cut(s) 416
MseI TTAA 1 cut(s) 123
MspI CCGG 2 cut(s) 68, 417
MspR9I CCNGG 3 cut(s) 430, 731, 874
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 3 cut(s) 430, 731, 874
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 242, 497, 506
NdeII GATC 6 cut(s) 73, 128, 309, 363, 402, 594
NheI GCTAGC 2 cut(s) 31, 496
NlaIII CATG 8 cut(s) 117, 236, 255, 364, 509, 563, 617, 622
NlaIV GGNNCC 3 cut(s) 183, 285, 653
NmuCI GTSAC 1 cut(s) 634
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 1 cut(s) 255
PaeI GCATGC 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 127
PctI GAATGC 1 cut(s) 324
PinAI ACCGGT 1 cut(s) 67
PkrI GCNGC 3 cut(s) 483, 493, 606
PpuMI RGGWCCY 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 3 cut(s) 428, 729, 872
PspGI CCWGG 3 cut(s) 428, 729, 872
PspN4I GGNNCC 3 cut(s) 183, 285, 653
PspPI GGNCC 3 cut(s) 181, 283, 652
PspPPI RGGWCCY 1 cut(s) 283
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 1 cut(s) 128
SalI GTCGAC 1 cut(s) 535
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 482, 492, 605
Sau3AI GATC 6 cut(s) 73, 128, 309, 363, 402, 594
Sau96I GGNCC 3 cut(s) 181, 283, 652
ScrFI CCNGG 3 cut(s) 430, 731, 874
SfaNI GCATC 3 cut(s) 4, 210, 258
SfcI CTRYAG 2 cut(s) 186, 317
SinI GGWCC 2 cut(s) 181, 283
SphI GCATGC 1 cut(s) 255
Sse9I AATT 2 cut(s) 393, 521
SsiI CCGC 3 cut(s) 118, 463, 513
SspMI CTAG 4 cut(s) 27, 32, 497, 626
StyD4I CCNGG 3 cut(s) 428, 729, 872
StyI CCWWGG 4 cut(s) 94, 237, 376, 745
TaaI ACNGT 1 cut(s) 541
TaqI TCGA 1 cut(s) 536
TasI AATT 2 cut(s) 393, 521
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 3 cut(s) 58, 643, 765
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 3 cut(s) 481, 491, 604
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 2 cut(s) 465, 707
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 3 cut(s) 58, 643, 765
VpaK11BI GGWCC 2 cut(s) 181, 283
VspI ATTAAT 1 cut(s) 123
XceI RCATGY 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 536
XspI CTAG 4 cut(s) 27, 32, 497, 626
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.