Rmu_sc0010381.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010381.1
OG0000187
Physical Location & Seq
Forward (+)
1 .. 1950
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010381.1_g000001.1.cds

Sequence Viewer

Length: 645 bp
cacctcctcctcttgcctccacctctccagccccacccaccttgtaacagcccctgccgcaaagccccacagccggccagatcagcacacaaggccaagcgctgcctaacctcacccagtcgctgcccagcctcacccaatcgccctcggcgctattgccccctcatcagcaaccccgcgtccagcgcttgccagcccaccccacgcagcaagcttgcagcctgcccaccagcgcccaccctcgatctcgccctgcagcctgcccaccctcaatccttcagcagccccgtgtcccgtgcagcaagcctgcagcctgcccaccagcgcccaccctcgatctcacctgcagcctgcccaccctcgatctaccagcaggcgaaggaagaagaagagagaaaagaaaaaaagaagaagagagaaagagagagaaaaaaaaaaaaaggtgttttaggtactaaaattgggtcggggtttgaacttcaggtcttaggtgaggatggtctgggcgatggccatgccgatgttatcggcgccgatgacggagatcttggtctggctattggtgcggcaccgtggatgagtatgcactacacatacacacatatgattgtctcattgctcttgattccatcttcattcctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.06

Weight (kDa)

9.61

Isoelectric Point (pI)

87.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 1 cut(s) 352
AccB1I GGYRCC 2 cut(s) 530, 568
AccII CGCG 1 cut(s) 179
AciI CCGC 3 cut(s) 58, 177, 566
AcoI YGGCCR 2 cut(s) 75, 511
AcuI CTGAAG 2 cut(s) 262, 464
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 1 cut(s) 454
AfeI AGCGCT 2 cut(s) 101, 187
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 476
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 616
AlwNI CAGNNNCTG 2 cut(s) 54, 123
Aor51HI AGCGCT 2 cut(s) 101, 187
AoxI GGCC 3 cut(s) 75, 93, 511
ApeKI GCWGC 9 cut(s) 102, 123, 207, 218, 256, 282, 299, 310, 347
AspLEI GCGC 6 cut(s) 102, 153, 188, 235, 327, 533
AsuHPI GGTGA 4 cut(s) 105, 126, 333, 503
BalI TGGCCA 1 cut(s) 513
BanI GGYRCC 2 cut(s) 530, 568
BbvI GCAGC 9 cut(s) 89, 110, 219, 230, 268, 294, 311, 322, 359
BccI CCATC 3 cut(s) 491, 503, 637
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BcoDI GTCTC 1 cut(s) 616
BfmI CTRYAG 3 cut(s) 254, 308, 345
BfoI RGCGCY 6 cut(s) 103, 154, 189, 236, 328, 534
BfuAI ACCTGC 1 cut(s) 352
BglII AGATCT 1 cut(s) 544
BmiI GGNNCC 2 cut(s) 532, 570
BmrI ACTGGG 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 146, 572
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 146, 572
BseGI GGATG 2 cut(s) 502, 582
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 9 cut(s) 89, 110, 219, 230, 268, 294, 311, 322, 359
BseYI CCCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 3 cut(s) 77, 95, 513
BshNI GGYRCC 2 cut(s) 530, 568
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 3 cut(s) 77, 95, 513
Bsp143I GATC 5 cut(s) 80, 244, 336, 363, 544
BspACI CCGC 3 cut(s) 58, 177, 566
BspANI GGCC 3 cut(s) 77, 95, 513
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 532, 570
BspMAI CTGCAG 3 cut(s) 258, 312, 349
BspMI ACCTGC 1 cut(s) 352
BspT107I GGYRCC 2 cut(s) 530, 568
BsrDI GCAATG 1 cut(s) 614
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 146, 572
BssMI GATC 5 cut(s) 80, 244, 336, 363, 544
BssNI GRCGYC 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 573
Bst6I CTCTTC 2 cut(s) 384, 407
BstACI GRCGYC 1 cut(s) 531
BstDEI CTNAG 1 cut(s) 487
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 2 cut(s) 502, 582
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 6 cut(s) 103, 154, 189, 236, 328, 534
BstHHI GCGC 6 cut(s) 102, 153, 188, 235, 327, 533
BstKTI GATC 5 cut(s) 83, 247, 339, 366, 547
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 5 cut(s) 80, 244, 336, 363, 544
BstMWI GCNNNNNNNGC 6 cut(s) 57, 83, 92, 150, 185, 563
BstSFI CTRYAG 3 cut(s) 254, 308, 345
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 9 cut(s) 89, 110, 219, 230, 268, 294, 311, 322, 359
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 3 cut(s) 77, 95, 513
BtgI CCRYGG 1 cut(s) 572
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 2 cut(s) 502, 582
BveI ACCTGC 1 cut(s) 352
CaiI CAGNNNCTG 2 cut(s) 54, 123
CfoI GCGC 6 cut(s) 102, 153, 188, 235, 327, 533
Cfr10I RCCGGY 1 cut(s) 73
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 23, 58
CviAII CATG 1 cut(s) 515
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 1 cut(s) 487
DinI GGCGCC 1 cut(s) 532
DpnI GATC 5 cut(s) 82, 246, 338, 365, 546
DpnII GATC 5 cut(s) 80, 244, 336, 363, 544
EaeI YGGCCR 2 cut(s) 75, 511
Eam1104I CTCTTC 2 cut(s) 384, 407
EarI CTCTTC 2 cut(s) 384, 407
Eco47III AGCGCT 2 cut(s) 101, 187
Eco57I CTGAAG 2 cut(s) 262, 464
EgeI GGCGCC 1 cut(s) 532
EheI GGCGCC 1 cut(s) 532
FaeI CATG 1 cut(s) 518
FaiI YATR 5 cut(s) 516, 584, 595, 603, 605
FaqI GGGAC 1 cut(s) 277
FatI CATG 1 cut(s) 514
FauI CCCGC 1 cut(s) 184
FauNDI CATATG 1 cut(s) 603
FokI GGATG 2 cut(s) 509, 589
GlaI GCGC 6 cut(s) 101, 152, 187, 234, 326, 532
GsaI CCCAGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 11
HaeII RGCGCY 6 cut(s) 103, 154, 189, 236, 328, 534
HaeIII GGCC 3 cut(s) 77, 95, 513
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 168
HhaI GCGC 6 cut(s) 102, 153, 188, 235, 327, 533
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 1 cut(s) 518
Hin6I GCGC 6 cut(s) 100, 151, 186, 233, 325, 531
HinP1I GCGC 6 cut(s) 100, 151, 186, 233, 325, 531
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 625
HpaII CCGG 1 cut(s) 74
HphI GGTGA 4 cut(s) 105, 126, 333, 503
Hpy188III TCNNGA 1 cut(s) 622
HpyAV CCTTC 2 cut(s) 286, 373
HpyCH4III ACNGT 1 cut(s) 573
HpyCH4V TGCA 6 cut(s) 218, 256, 299, 310, 347, 586
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 83, 92, 150, 185, 563
HpyF3I CTNAG 1 cut(s) 487
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 1 cut(s) 518
HspAI GCGC 6 cut(s) 100, 151, 186, 233, 325, 531
KasI GGCGCC 1 cut(s) 530
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Kzo9I GATC 5 cut(s) 80, 244, 336, 363, 544
Lsp1109I GCAGC 9 cut(s) 89, 110, 219, 230, 268, 294, 311, 322, 359
MaeIII GTNAC 1 cut(s) 44
MalI GATC 5 cut(s) 82, 246, 338, 365, 546
MboI GATC 5 cut(s) 80, 244, 336, 363, 544
MboII GAAGA 6 cut(s) 395, 398, 401, 421, 424, 624
MflI RGATCY 1 cut(s) 544
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 1 cut(s) 459
MluNI TGGCCA 1 cut(s) 513
Mly113I GGCGCC 1 cut(s) 531
Mox20I TGGCCA 1 cut(s) 513
MroNI GCCGGC 1 cut(s) 73
MscI TGGCCA 1 cut(s) 513
MseI TTAA 1 cut(s) 643
MslI CAYNNNNRTG 2 cut(s) 519, 602
Msp20I TGGCCA 1 cut(s) 513
MspI CCGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 6 cut(s) 57, 83, 92, 150, 185, 563
NaeI GCCGGC 1 cut(s) 75
NarI GGCGCC 1 cut(s) 531
NdeI CATATG 1 cut(s) 603
NdeII GATC 5 cut(s) 80, 244, 336, 363, 544
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 1 cut(s) 518
NlaIV GGNNCC 2 cut(s) 532, 570
NmeAIII GCCGAG 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 352
PdiI GCCGGC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 625
PluTI GGCGCC 1 cut(s) 534
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 532, 570
PstI CTGCAG 3 cut(s) 258, 312, 349
PstNI CAGNNNCTG 2 cut(s) 54, 123
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 2 cut(s) 519, 602
SaqAI TTAA 1 cut(s) 643
Sau3AI GATC 5 cut(s) 80, 244, 336, 363, 544
SfcI CTRYAG 3 cut(s) 254, 308, 345
SfoI GGCGCC 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 519, 602
Sse9I AATT 1 cut(s) 459
SsiI CCGC 3 cut(s) 58, 177, 566
SspDI GGCGCC 1 cut(s) 530
TaaI ACNGT 1 cut(s) 573
TaqI TCGA 3 cut(s) 243, 335, 362
TasI AATT 1 cut(s) 459
TauI GCSGC 2 cut(s) 60, 569
TfiI GAWTC 1 cut(s) 625
Tru1I TTAA 1 cut(s) 643
Tru9I TTAA 1 cut(s) 643
TseI GCWGC 9 cut(s) 102, 123, 207, 218, 256, 282, 299, 310, 347
TspDTI ATGAA 1 cut(s) 624
TspGWI ACGGA 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.