Rorug05G0364500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000187
Physical Location & Seq
Forward (+)
48496616 .. 48499071
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0364500.1

Sequence Viewer

Length: 225 bp
ATGGCCAAGGATAGCTGTTTGAGTCGCATGGCCGTCGGCGCAGCTGTCGGGGGCGCTGTCGGTTGTGCCGTCGGTGTGATGTATGGCTCATTTGAGGCTATAAGGTGTAAGGTGCCAGGGGTAGAGAAGATCAGGTATGTTGGGCAAAGGACGATTGGCAGTGCAGCTGTTTTCAGCCTTTTCTTAAGTGCTGGTGCATTGATACATTGTGGAAAGTCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.55

Weight (kDa)

9.34

Isoelectric Point (pI)

19.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Romo1 PF10247 5 - 70 1.4e-19 Reactive mitochondrial oxygen species modulator 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 112
AcoI YGGCCR 2 cut(s) 3, 30
AflII CTTAAG 1 cut(s) 184
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 15, 44, 167
AluI AGCT 3 cut(s) 15, 44, 167
AoxI GGCC 2 cut(s) 3, 30
ApeKI GCWGC 2 cut(s) 41, 164
AspLEI GCGC 2 cut(s) 41, 56
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 53, 176
BceAI ACGGC 2 cut(s) 17, 53
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 57
BfrI CTTAAG 1 cut(s) 184
BisI GCNGC 2 cut(s) 42, 165
BlsI GCNGC 2 cut(s) 43, 166
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 6, 116
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 6, 116
BseXI GCAGC 2 cut(s) 53, 176
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 5, 32
BshNI GGYRCC 1 cut(s) 112
BsnI GGCC 2 cut(s) 5, 32
Bsp143I GATC 1 cut(s) 129
BspANI GGCC 2 cut(s) 5, 32
BspLI GGNNCC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 112
BspTI CTTAAG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 6, 116
BssMI GATC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 41, 56
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 53, 176
BsuRI GGCC 2 cut(s) 5, 32
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
CfoI GCGC 2 cut(s) 41, 56
CviAII CATG 1 cut(s) 28
CviJI RGCY 8 cut(s) 5, 15, 32, 44, 87, 98, 167, 177
CviKI_1 RGCY 8 cut(s) 5, 15, 32, 44, 87, 98, 167, 177
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
EaeI YGGCCR 2 cut(s) 3, 30
Eco130I CCWWGG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 84, 101, 138, 220
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 42, 165
Fsp4HI GCNGC 2 cut(s) 42, 165
GlaI GCGC 2 cut(s) 40, 55
GluI GCNGC 2 cut(s) 42, 165
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 2 cut(s) 5, 32
HhaI GCGC 2 cut(s) 41, 56
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 2 cut(s) 39, 54
HinP1I GCGC 2 cut(s) 39, 54
HinfI GANTC 1 cut(s) 22
Hpy99I CGWCG 2 cut(s) 38, 74
HpyCH4V TGCA 2 cut(s) 164, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 2 cut(s) 39, 54
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 102, 118, 129, 177
Lsp1109I GCAGC 2 cut(s) 53, 176
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 1 cut(s) 88
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 185, 223
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 44, 167
MspCI CTTAAG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 1 cut(s) 129
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PkrI GCNGC 2 cut(s) 43, 166
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 114
PvuII CAGCTG 2 cut(s) 44, 167
SaqAI TTAA 2 cut(s) 185, 223
SatI GCNGC 2 cut(s) 42, 165
Sau3AI GATC 1 cut(s) 129
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 117
SetI ASST 6 cut(s) 17, 46, 107, 114, 137, 169
SgeI CNNG 7 cut(s) 19, 40, 61, 128, 129, 145, 204
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 6
Tru1I TTAA 2 cut(s) 185, 223
Tru9I TTAA 2 cut(s) 185, 223
TscAI CASTG 1 cut(s) 166
TseI GCWGC 2 cut(s) 41, 164
TspRI CASTG 1 cut(s) 166
Vha464I CTTAAG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.