Rmu_sc0000909.1_g000010

negative regulation of oxidative stress-induced neuron death

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000909.1
Physical Location & Seq
Forward (+)
46474 .. 46803
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000909.1_g000010.1.cds

Sequence Viewer

Length: 330 bp
atgagttccgttgatgccatggctgcccgactcgcctcctctcttgcactggcagaggggaagaagaaggtagatctccgtccatcgcaaggcaagggcttgcgaaaatctgaagtttttatggttggaaaactcctcactgctagggagttcaaggtccgttccttcctaggtatgtttcgatctgcttggagggtcaatgggacgctgcaagttgaagaagctgaaggaggtaggattttgttcactttttcagatcttacagaccgagctacgggttggaggtgcgcaccatggggttttaaccgtgctcttgtggttttggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.02

Weight (kDa)

10.6

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 289
AcuI CTGAAG 2 cut(s) 132, 246
AfiI CCNNNNNNNGG 2 cut(s) 89, 274
AgsI TTSAA 2 cut(s) 154, 218
AluBI AGCT 2 cut(s) 224, 272
AluI AGCT 2 cut(s) 224, 272
Alw21I GWGCWC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 23, 208
AspA2I CCTAGG 1 cut(s) 169
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 157
AvrII CCTAGG 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 10, 195
BccI CCATC 1 cut(s) 91
BfaI CTAG 2 cut(s) 144, 170
BglII AGATCT 2 cut(s) 73, 256
BisI GCNGC 2 cut(s) 24, 209
BlnI CCTAGG 1 cut(s) 169
BlsI GCNGC 2 cut(s) 25, 210
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 4
BsaJI CCNNGG 3 cut(s) 18, 169, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 274
Bse1I ACTGG 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 18, 169, 293
BseLI CCNNNNNNNGG 2 cut(s) 89, 274
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 2 cut(s) 28, 125
BseXI GCAGC 2 cut(s) 10, 195
BsiHKAI GWGCWC 1 cut(s) 313
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 89, 274
BsmFI GGGAC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 73, 182, 256
Bsp19I CCATGG 2 cut(s) 18, 293
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 18, 169, 293
BssMI GATC 3 cut(s) 73, 182, 256
BssT1I CCWWGG 3 cut(s) 18, 169, 293
Bst4CI ACNGT 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 2 cut(s) 18, 293
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 3 cut(s) 76, 185, 259
BstMBI GATC 3 cut(s) 73, 182, 256
BstMWI GCNNNNNNNGC 2 cut(s) 23, 32
BstV1I GCAGC 2 cut(s) 10, 195
BstX2I RGATCY 2 cut(s) 73, 256
BstYI RGATCY 2 cut(s) 73, 256
BtgI CCRYGG 2 cut(s) 18, 293
BtgZI GCGATG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 47, 138
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 214
CviAII CATG 2 cut(s) 19, 294
CviJI RGCY 5 cut(s) 23, 99, 224, 272, 326
CviKI_1 RGCY 5 cut(s) 23, 99, 224, 272, 326
DdeI CTNAG 1 cut(s) 327
DpnI GATC 3 cut(s) 75, 184, 258
DpnII GATC 3 cut(s) 73, 182, 256
Eco130I CCWWGG 3 cut(s) 18, 169, 293
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 132, 246
EcoT14I CCWWGG 3 cut(s) 18, 169, 293
ErhI CCWWGG 3 cut(s) 18, 169, 293
FaeI CATG 2 cut(s) 22, 297
FaiI YATR 4 cut(s) 20, 122, 176, 295
FaqI GGGAC 1 cut(s) 217
FatI CATG 2 cut(s) 18, 293
Fnu4HI GCNGC 2 cut(s) 24, 209
Fsp4HI GCNGC 2 cut(s) 24, 209
FspAI RTGCGCAY 1 cut(s) 289
FspBI CTAG 2 cut(s) 144, 170
FspI TGCGCA 1 cut(s) 289
GlaI GCGC 1 cut(s) 289
GluI GCNGC 2 cut(s) 24, 209
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 290
Hin1II CATG 2 cut(s) 22, 297
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HinfI GANTC 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 2 cut(s) 112, 256
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 3 cut(s) 61, 175, 221
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 47, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 32
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 2 cut(s) 22, 297
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 3 cut(s) 73, 182, 256
LpnPI CCDG 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 10, 195
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 144, 170
MalI GATC 3 cut(s) 75, 184, 258
MboI GATC 3 cut(s) 73, 182, 256
MboII GAAGA 3 cut(s) 73, 76, 230
MflI RGATCY 2 cut(s) 73, 256
MhlI GDGCHC 1 cut(s) 313
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 2 cut(s) 106, 260
MnlI CCTC 7 cut(s) 46, 49, 49, 146, 186, 224, 276
MseI TTAA 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 23, 32
NcoI CCATGG 2 cut(s) 18, 293
NdeII GATC 3 cut(s) 73, 182, 256
NlaIII CATG 2 cut(s) 22, 297
NsbI TGCGCA 1 cut(s) 289
PkrI GCNGC 2 cut(s) 25, 210
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 2 cut(s) 73, 256
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 2 cut(s) 24, 209
Sau3AI GATC 3 cut(s) 73, 182, 256
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 24
SduI GDGCHC 1 cut(s) 313
SetI ASST 7 cut(s) 72, 159, 175, 226, 235, 274, 287
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 157
SspMI CTAG 2 cut(s) 144, 170
StyI CCWWGG 3 cut(s) 18, 169, 293
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 181
TaqII GACCGA 1 cut(s) 282
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 2 cut(s) 54, 145
TseI GCWGC 2 cut(s) 23, 208
TspGWI ACGGA 2 cut(s) 68, 149
TspRI CASTG 2 cut(s) 54, 145
VpaK11BI GGWCC 1 cut(s) 157
XmaJI CCTAGG 1 cut(s) 169
XspI CTAG 2 cut(s) 144, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.