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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 218, 552 |
| AccB1I | GGYRCC | 2 cut(s) | 218, 552 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 487 |
| AccBSI | CCGCTC | 1 cut(s) | 51 |
| AccI | GTMKAC | 1 cut(s) | 504 |
| AccII | CGCG | 3 cut(s) | 27, 159, 188 |
| AciI | CCGC | 5 cut(s) | 49, 80, 186, 393, 497 |
| AclI | AACGTT | 1 cut(s) | 313 |
| AclWI | GGATC | 2 cut(s) | 135, 212 |
| AcoI | YGGCCR | 2 cut(s) | 11, 92 |
| AcsI | RAATTY | 2 cut(s) | 34, 341 |
| AfaI | GTAC | 6 cut(s) | 200, 220, 320, 362, 492, 554 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 90, 487 |
| AgsI | TTSAA | 5 cut(s) | 227, 292, 341, 358, 524 |
| AjnI | CCWGG | 1 cut(s) | 396 |
| AleI | CACNNNNGTG | 1 cut(s) | 537 |
| AluBI | AGCT | 2 cut(s) | 265, 547 |
| AluI | AGCT | 2 cut(s) | 265, 547 |
| Alw21I | GWGCWC | 1 cut(s) | 549 |
| AlwI | GGATC | 2 cut(s) | 135, 212 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 144 |
| Ama87I | CYCGRG | 1 cut(s) | 52 |
| AoxI | GGCC | 6 cut(s) | 11, 81, 92, 135, 175, 394 |
| ApeKI | GCWGC | 2 cut(s) | 152, 515 |
| ApoI | RAATTY | 2 cut(s) | 34, 341 |
| Asp718I | GGTACC | 2 cut(s) | 218, 552 |
| AspLEI | GCGC | 3 cut(s) | 161, 168, 190 |
| AspS9I | GGNCC | 2 cut(s) | 82, 428 |
| AsuHPI | GGTGA | 3 cut(s) | 118, 412, 461 |
| AvaI | CYCGRG | 1 cut(s) | 52 |
| AvaII | GGWCC | 1 cut(s) | 428 |
| BalI | TGGCCA | 1 cut(s) | 94 |
| BanI | GGYRCC | 2 cut(s) | 218, 552 |
| BanII | GRGCYC | 1 cut(s) | 549 |
| Bbv12I | GWGCWC | 1 cut(s) | 549 |
| BbvI | GCAGC | 2 cut(s) | 139, 502 |
| BccI | CCATC | 3 cut(s) | 22, 109, 440 |
| BciT130I | CCWGG | 1 cut(s) | 398 |
| BfaI | CTAG | 1 cut(s) | 559 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 10, 174 |
| BisI | GCNGC | 4 cut(s) | 81, 153, 394, 516 |
| BlsI | GCNGC | 4 cut(s) | 82, 154, 395, 517 |
| Bme1390I | CCNGG | 1 cut(s) | 398 |
| Bme18I | GGWCC | 1 cut(s) | 428 |
| BmeT110I | CYCGRG | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 2 cut(s) | 82, 428 |
| BmiI | GGNNCC | 4 cut(s) | 220, 429, 478, 554 |
| BmrFI | CCNGG | 1 cut(s) | 398 |
| BmrI | ACTGGG | 1 cut(s) | 331 |
| BmsI | GCATC | 1 cut(s) | 132 |
| BmuI | ACTGGG | 1 cut(s) | 331 |
| BpmI | CTGGAG | 1 cut(s) | 529 |
| Bsa29I | ATCGAT | 1 cut(s) | 237 |
| BsaJI | CCNNGG | 2 cut(s) | 169, 214 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 90, 487 |
| Bse118I | RCCGGY | 1 cut(s) | 9 |
| Bse1I | ACTGG | 4 cut(s) | 206, 326, 498, 512 |
| Bse3DI | GCAATG | 1 cut(s) | 299 |
| BseBI | CCWGG | 1 cut(s) | 398 |
| BseCI | ATCGAT | 1 cut(s) | 237 |
| BseDI | CCNNGG | 2 cut(s) | 169, 214 |
| BseGI | GGATG | 3 cut(s) | 14, 101, 451 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 90, 487 |
| BseMI | GCAATG | 1 cut(s) | 299 |
| BseMII | CTCAG | 1 cut(s) | 126 |
| BseNI | ACTGG | 4 cut(s) | 206, 326, 498, 512 |
| BseRI | GAGGAG | 1 cut(s) | 467 |
| BseXI | GCAGC | 2 cut(s) | 139, 502 |
| BseYI | CCCAGC | 1 cut(s) | 480 |
| BsgI | GTGCAG | 2 cut(s) | 138, 370 |
| Bsh1236I | CGCG | 3 cut(s) | 27, 159, 188 |
| Bsh1285I | CGRYCG | 1 cut(s) | 501 |
| BshFI | GGCC | 6 cut(s) | 13, 83, 94, 137, 177, 396 |
| BshNI | GGYRCC | 2 cut(s) | 218, 552 |
| BshVI | ATCGAT | 1 cut(s) | 237 |
| BsiEI | CGRYCG | 1 cut(s) | 501 |
| BsiHKAI | GWGCWC | 1 cut(s) | 549 |
| BsiHKCI | CYCGRG | 1 cut(s) | 52 |
| BsiSI | CCGG | 1 cut(s) | 10 |
| BslFI | GGGAC | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 90, 487 |
| BsmFI | GGGAC | 1 cut(s) | 441 |
| BsnI | GGCC | 6 cut(s) | 13, 83, 94, 137, 177, 396 |
| BsoBI | CYCGRG | 1 cut(s) | 52 |
| Bsp1286I | GDGCHC | 1 cut(s) | 549 |
| Bsp143I | GATC | 4 cut(s) | 69, 140, 204, 234 |
| BspACI | CCGC | 5 cut(s) | 49, 80, 186, 393, 497 |
| BspANI | GGCC | 6 cut(s) | 13, 83, 94, 137, 177, 396 |
| BspCNI | CTCAG | 1 cut(s) | 125 |
| BspDI | ATCGAT | 1 cut(s) | 237 |
| BspFNI | CGCG | 3 cut(s) | 27, 159, 188 |
| BspLI | GGNNCC | 4 cut(s) | 220, 429, 478, 554 |
| BspPI | GGATC | 2 cut(s) | 135, 212 |
| BspT107I | GGYRCC | 2 cut(s) | 218, 552 |
| BsrBI | CCGCTC | 1 cut(s) | 51 |
| BsrDI | GCAATG | 1 cut(s) | 299 |
| BsrFI | RCCGGY | 1 cut(s) | 9 |
| BsrI | ACTGG | 4 cut(s) | 206, 326, 498, 512 |
| BssAI | RCCGGY | 1 cut(s) | 9 |
| BssECI | CCNNGG | 2 cut(s) | 169, 214 |
| BssMI | GATC | 4 cut(s) | 69, 140, 204, 234 |
| BssT1I | CCWWGG | 2 cut(s) | 169, 214 |
| Bst2UI | CCWGG | 1 cut(s) | 398 |
| Bst4CI | ACNGT | 1 cut(s) | 539 |
| Bst6I | CTCTTC | 1 cut(s) | 188 |
| BstC8I | GCNNGC | 2 cut(s) | 157, 186 |
| BstDEI | CTNAG | 1 cut(s) | 112 |
| BstF5I | GGATG | 3 cut(s) | 14, 101, 451 |
| BstFNI | CGCG | 3 cut(s) | 27, 159, 188 |
| BstHHI | GCGC | 3 cut(s) | 161, 168, 190 |
| BstKTI | GATC | 4 cut(s) | 72, 143, 207, 237 |
| BstMBI | GATC | 4 cut(s) | 69, 140, 204, 234 |
| BstMCI | CGRYCG | 1 cut(s) | 501 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 158, 165, 174 |
| BstNI | CCWGG | 1 cut(s) | 398 |
| BstSCI | CCNGG | 1 cut(s) | 396 |
| BstUI | CGCG | 3 cut(s) | 27, 159, 188 |
| BstV1I | GCAGC | 2 cut(s) | 139, 502 |
| BstX2I | RGATCY | 1 cut(s) | 140 |
| BstYI | RGATCY | 1 cut(s) | 140 |
| Bsu15I | ATCGAT | 1 cut(s) | 237 |
| BsuRI | GGCC | 6 cut(s) | 13, 83, 94, 137, 177, 396 |
| BsuTUI | ATCGAT | 1 cut(s) | 237 |
| BtsCI | GGATG | 3 cut(s) | 14, 101, 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 434 |
| Cac8I | GCNNGC | 2 cut(s) | 157, 186 |
| CaiI | CAGNNNCTG | 1 cut(s) | 144 |
| CfoI | GCGC | 3 cut(s) | 161, 168, 190 |
| Cfr10I | RCCGGY | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 2 cut(s) | 82, 428 |
| ClaI | ATCGAT | 1 cut(s) | 237 |
| Csp6I | GTAC | 6 cut(s) | 199, 219, 319, 361, 491, 553 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 87, 122 |
| CviAII | CATG | 2 cut(s) | 163, 407 |
| CviQI | GTAC | 6 cut(s) | 199, 219, 319, 361, 491, 553 |
| DdeI | CTNAG | 1 cut(s) | 112 |
| DpnI | GATC | 4 cut(s) | 71, 142, 206, 236 |
| DpnII | GATC | 4 cut(s) | 69, 140, 204, 234 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| EaeI | YGGCCR | 2 cut(s) | 11, 92 |
| Eam1104I | CTCTTC | 1 cut(s) | 188 |
| EarI | CTCTTC | 1 cut(s) | 188 |
| Ecl136II | GAGCTC | 1 cut(s) | 547 |
| Eco130I | CCWWGG | 2 cut(s) | 169, 214 |
| Eco24I | GRGCYC | 1 cut(s) | 549 |
| Eco47I | GGWCC | 1 cut(s) | 428 |
| Eco53kI | GAGCTC | 1 cut(s) | 547 |
| Eco88I | CYCGRG | 1 cut(s) | 52 |
| EcoICRI | GAGCTC | 1 cut(s) | 547 |
| EcoRI | GAATTC | 1 cut(s) | 341 |
| EcoRII | CCWGG | 1 cut(s) | 396 |
| EcoT14I | CCWWGG | 2 cut(s) | 169, 214 |
| EcoT38I | GRGCYC | 1 cut(s) | 549 |
| ErhI | CCWWGG | 2 cut(s) | 169, 214 |
| FaeI | CATG | 2 cut(s) | 166, 410 |
| FaiI | YATR | 4 cut(s) | 23, 164, 408, 488 |
| FaqI | GGGAC | 1 cut(s) | 441 |
| FatI | CATG | 2 cut(s) | 162, 406 |
| FauI | CCCGC | 1 cut(s) | 193 |
| FblI | GTMKAC | 1 cut(s) | 504 |
| Fnu4HI | GCNGC | 4 cut(s) | 81, 153, 394, 516 |
| FokI | GGATG | 2 cut(s) | 88, 458 |
| FriOI | GRGCYC | 1 cut(s) | 549 |
| Fsp4HI | GCNGC | 4 cut(s) | 81, 153, 394, 516 |
| FspBI | CTAG | 1 cut(s) | 559 |
| GlaI | GCGC | 3 cut(s) | 160, 167, 189 |
| GluI | GCNGC | 4 cut(s) | 81, 153, 394, 516 |
| GsaI | CCCAGC | 1 cut(s) | 484 |
| GsuI | CTGGAG | 1 cut(s) | 529 |
| HaeIII | GGCC | 6 cut(s) | 13, 83, 94, 137, 177, 396 |
| HapII | CCGG | 1 cut(s) | 10 |
| HhaI | GCGC | 3 cut(s) | 161, 168, 190 |
| Hin1II | CATG | 2 cut(s) | 166, 410 |
| Hin6I | GCGC | 3 cut(s) | 159, 166, 188 |
| HinP1I | GCGC | 3 cut(s) | 159, 166, 188 |
| HindIII | AAGCTT | 1 cut(s) | 263 |
| HinfI | GANTC | 4 cut(s) | 271, 276, 354, 403 |
| HpaII | CCGG | 1 cut(s) | 10 |
| HphI | GGTGA | 3 cut(s) | 118, 412, 461 |
| Hpy166II | GTNNAC | 1 cut(s) | 505 |
| Hpy188I | TCNGA | 2 cut(s) | 45, 115 |
| Hpy188III | TCNNGA | 3 cut(s) | 54, 280, 426 |
| Hpy8I | GTNNAC | 1 cut(s) | 505 |
| Hpy99I | CGWCG | 1 cut(s) | 539 |
| HpyAV | CCTTC | 1 cut(s) | 127 |
| HpyCH4III | ACNGT | 1 cut(s) | 539 |
| HpyCH4IV | ACGT | 1 cut(s) | 313 |
| HpyCH4V | TGCA | 2 cut(s) | 155, 351 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 158, 165, 174 |
| HpyF3I | CTNAG | 1 cut(s) | 112 |
| HpySE526I | ACGT | 1 cut(s) | 313 |
| Hsp92II | CATG | 2 cut(s) | 166, 410 |
| HspAI | GCGC | 3 cut(s) | 159, 166, 188 |
| KpnI | GGTACC | 2 cut(s) | 222, 556 |
| Kzo9I | GATC | 4 cut(s) | 69, 140, 204, 234 |
| LmnI | GCTCC | 1 cut(s) | 56 |
| Lsp1109I | GCAGC | 2 cut(s) | 139, 502 |
| LweI | GCATC | 1 cut(s) | 132 |
| MaeI | CTAG | 1 cut(s) | 559 |
| MaeII | ACGT | 1 cut(s) | 313 |
| MaeIII | GTNAC | 1 cut(s) | 400 |
| MalI | GATC | 4 cut(s) | 71, 142, 206, 236 |
| MbiI | CCGCTC | 1 cut(s) | 51 |
| MboI | GATC | 4 cut(s) | 69, 140, 204, 234 |
| MboII | GAAGA | 2 cut(s) | 205, 341 |
| MflI | RGATCY | 1 cut(s) | 140 |
| MhlI | GDGCHC | 1 cut(s) | 549 |
| MlsI | TGGCCA | 1 cut(s) | 94 |
| MluCI | AATT | 3 cut(s) | 34, 341, 388 |
| MluNI | TGGCCA | 1 cut(s) | 94 |
| MlyI | GAGTC | 2 cut(s) | 285, 397 |
| MnlI | CCTC | 7 cut(s) | 121, 167, 189, 328, 436, 445, 448 |
| Mox20I | TGGCCA | 1 cut(s) | 94 |
| MscI | TGGCCA | 1 cut(s) | 94 |
| MseI | TTAA | 1 cut(s) | 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 537 |
| Msp20I | TGGCCA | 1 cut(s) | 94 |
| MspA1I | CMGCKG | 1 cut(s) | 80 |
| MspI | CCGG | 1 cut(s) | 10 |
| MspR9I | CCNGG | 1 cut(s) | 398 |
| MvaI | CCWGG | 1 cut(s) | 398 |
| MvnI | CGCG | 3 cut(s) | 27, 159, 188 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 158, 165, 174 |
| NdeII | GATC | 4 cut(s) | 69, 140, 204, 234 |
| NlaIII | CATG | 2 cut(s) | 166, 410 |
| NlaIV | GGNNCC | 4 cut(s) | 220, 429, 478, 554 |
| NmuCI | GTSAC | 1 cut(s) | 400 |
| OliI | CACNNNNGTG | 1 cut(s) | 537 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 540 |
| PfeI | GAWTC | 2 cut(s) | 271, 354 |
| PflFI | GACNNNGTC | 1 cut(s) | 539 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 487 |
| PkrI | GCNGC | 4 cut(s) | 82, 154, 395, 517 |
| PleI | GAGTC | 2 cut(s) | 284, 397 |
| PpsI | GAGTC | 2 cut(s) | 284, 397 |
| Psp124BI | GAGCTC | 1 cut(s) | 549 |
| Psp1406I | AACGTT | 1 cut(s) | 313 |
| Psp6I | CCWGG | 1 cut(s) | 396 |
| PspFI | CCCAGC | 1 cut(s) | 480 |
| PspGI | CCWGG | 1 cut(s) | 396 |
| PspN4I | GGNNCC | 4 cut(s) | 220, 429, 478, 554 |
| PspPI | GGNCC | 2 cut(s) | 82, 428 |
| PstNI | CAGNNNCTG | 1 cut(s) | 144 |
| PsuI | RGATCY | 1 cut(s) | 140 |
| PsyI | GACNNNGTC | 1 cut(s) | 539 |
| RsaI | GTAC | 6 cut(s) | 200, 220, 320, 362, 492, 554 |
| RsaNI | GTAC | 6 cut(s) | 199, 219, 319, 361, 491, 553 |
| RseI | CAYNNNNRTG | 1 cut(s) | 537 |
| SacI | GAGCTC | 1 cut(s) | 549 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| SatI | GCNGC | 4 cut(s) | 81, 153, 394, 516 |
| Sau3AI | GATC | 4 cut(s) | 69, 140, 204, 234 |
| Sau96I | GGNCC | 2 cut(s) | 82, 428 |
| SchI | GAGTC | 2 cut(s) | 285, 397 |
| ScrFI | CCNGG | 1 cut(s) | 398 |
| SduI | GDGCHC | 1 cut(s) | 549 |
| SfaNI | GCATC | 1 cut(s) | 132 |
| SinI | GGWCC | 1 cut(s) | 428 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 537 |
| Sse9I | AATT | 3 cut(s) | 34, 341, 388 |
| SsiI | CCGC | 5 cut(s) | 49, 80, 186, 393, 497 |
| SspMI | CTAG | 1 cut(s) | 559 |
| SstI | GAGCTC | 1 cut(s) | 549 |
| StyD4I | CCNGG | 1 cut(s) | 396 |
| StyI | CCWWGG | 2 cut(s) | 169, 214 |
| TaaI | ACNGT | 1 cut(s) | 539 |
| TaiI | ACGT | 1 cut(s) | 316 |
| TaqI | TCGA | 4 cut(s) | 68, 237, 274, 543 |
| TaqII | GACCGA | 1 cut(s) | 445 |
| TasI | AATT | 3 cut(s) | 34, 341, 388 |
| TauI | GCSGC | 2 cut(s) | 83, 396 |
| TfiI | GAWTC | 2 cut(s) | 271, 354 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TscAI | CASTG | 1 cut(s) | 441 |
| TseFI | GTSAC | 1 cut(s) | 400 |
| TseI | GCWGC | 2 cut(s) | 152, 515 |
| Tsp45I | GTSAC | 1 cut(s) | 400 |
| TspRI | CASTG | 1 cut(s) | 441 |
| Tth111I | GACNNNGTC | 1 cut(s) | 539 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 487 |
| VpaK11BI | GGWCC | 1 cut(s) | 428 |
| XapI | RAATTY | 2 cut(s) | 34, 341 |
| XmiI | GTMKAC | 1 cut(s) | 504 |
| XspI | CTAG | 1 cut(s) | 559 |