Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 93 |
| AclWI | GGATC | 3 cut(s) | 159, 164, 272 |
| AcsI | RAATTY | 1 cut(s) | 37 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 261 |
| AgsI | TTSAA | 1 cut(s) | 343 |
| AjnI | CCWGG | 2 cut(s) | 48, 330 |
| AluBI | AGCT | 2 cut(s) | 13, 170 |
| AluI | AGCT | 2 cut(s) | 13, 170 |
| Alw21I | GWGCWC | 1 cut(s) | 172 |
| AlwI | GGATC | 3 cut(s) | 159, 164, 272 |
| Ama87I | CYCGRG | 1 cut(s) | 24 |
| ApoI | RAATTY | 1 cut(s) | 37 |
| AspLEI | GCGC | 1 cut(s) | 93 |
| AsuHPI | GGTGA | 5 cut(s) | 10, 88, 238, 319, 347 |
| AvaI | CYCGRG | 1 cut(s) | 24 |
| BanII | GRGCYC | 1 cut(s) | 172 |
| Bbv12I | GWGCWC | 1 cut(s) | 172 |
| BbvCI | CCTCAGC | 1 cut(s) | 250 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 2 cut(s) | 50, 332 |
| BfaI | CTAG | 1 cut(s) | 203 |
| Bme1390I | CCNGG | 2 cut(s) | 50, 332 |
| BmeT110I | CYCGRG | 1 cut(s) | 24 |
| BmrFI | CCNGG | 2 cut(s) | 50, 332 |
| BmsI | GCATC | 1 cut(s) | 214 |
| Bpu10I | CCTNAGC | 1 cut(s) | 250 |
| BsaBI | GATNNNNATC | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 4 cut(s) | 49, 173, 330, 331 |
| BsaWI | WCCGGW | 1 cut(s) | 193 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 261 |
| Bse1I | ACTGG | 1 cut(s) | 266 |
| Bse8I | GATNNNNATC | 1 cut(s) | 150 |
| BseBI | CCWGG | 2 cut(s) | 50, 332 |
| BseDI | CCNNGG | 4 cut(s) | 49, 173, 330, 331 |
| BseGI | GGATG | 2 cut(s) | 60, 229 |
| BseJI | GATNNNNATC | 1 cut(s) | 150 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BseMII | CTCAG | 2 cut(s) | 264, 291 |
| BseNI | ACTGG | 1 cut(s) | 266 |
| BseRI | GAGGAG | 3 cut(s) | 113, 116, 119 |
| Bsh1236I | CGCG | 1 cut(s) | 93 |
| Bsh1285I | CGRYCG | 1 cut(s) | 148 |
| BsiEI | CGRYCG | 1 cut(s) | 148 |
| BsiHKAI | GWGCWC | 1 cut(s) | 172 |
| BsiHKCI | CYCGRG | 1 cut(s) | 24 |
| BsiSI | CCGG | 1 cut(s) | 194 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BsmI | GAATGC | 1 cut(s) | 279 |
| BsoBI | CYCGRG | 1 cut(s) | 24 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp143I | GATC | 4 cut(s) | 145, 151, 156, 264 |
| Bsp19I | CCATGG | 1 cut(s) | 173 |
| BspCNI | CTCAG | 2 cut(s) | 263, 292 |
| BspFNI | CGCG | 1 cut(s) | 93 |
| BspPI | GGATC | 3 cut(s) | 159, 164, 272 |
| BsrI | ACTGG | 1 cut(s) | 266 |
| BssECI | CCNNGG | 4 cut(s) | 49, 173, 330, 331 |
| BssMI | GATC | 4 cut(s) | 145, 151, 156, 264 |
| BssT1I | CCWWGG | 1 cut(s) | 173 |
| Bst2UI | CCWGG | 2 cut(s) | 50, 332 |
| BstDEI | CTNAG | 2 cut(s) | 250, 300 |
| BstDSI | CCRYGG | 1 cut(s) | 173 |
| BstF5I | GGATG | 2 cut(s) | 60, 229 |
| BstFNI | CGCG | 1 cut(s) | 93 |
| BstHHI | GCGC | 1 cut(s) | 93 |
| BstKTI | GATC | 4 cut(s) | 148, 154, 159, 267 |
| BstMBI | GATC | 4 cut(s) | 145, 151, 156, 264 |
| BstMCI | CGRYCG | 1 cut(s) | 148 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 197 |
| BstNI | CCWGG | 2 cut(s) | 50, 332 |
| BstNSI | RCATGY | 1 cut(s) | 362 |
| BstSCI | CCNGG | 2 cut(s) | 48, 330 |
| BstUI | CGCG | 1 cut(s) | 93 |
| BstX2I | RGATCY | 1 cut(s) | 156 |
| BstYI | RGATCY | 1 cut(s) | 156 |
| BtgI | CCRYGG | 1 cut(s) | 173 |
| BtsCI | GGATG | 2 cut(s) | 60, 229 |
| BtsI | GCAGTG | 1 cut(s) | 86 |
| BtsIMutI | CAGTG | 1 cut(s) | 86 |
| CfoI | GCGC | 1 cut(s) | 93 |
| CseI | GACGC | 2 cut(s) | 82, 146 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 6 cut(s) | 69, 174, 188, 287, 359, 364 |
| CviJI | RGCY | 4 cut(s) | 13, 170, 206, 254 |
| CviKI_1 | RGCY | 4 cut(s) | 13, 170, 206, 254 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 2 cut(s) | 250, 300 |
| DpnI | GATC | 4 cut(s) | 147, 153, 158, 266 |
| DpnII | GATC | 4 cut(s) | 145, 151, 156, 264 |
| Ecl136II | GAGCTC | 1 cut(s) | 170 |
| Eco130I | CCWWGG | 1 cut(s) | 173 |
| Eco24I | GRGCYC | 1 cut(s) | 172 |
| Eco53kI | GAGCTC | 1 cut(s) | 170 |
| Eco88I | CYCGRG | 1 cut(s) | 24 |
| EcoICRI | GAGCTC | 1 cut(s) | 170 |
| EcoRII | CCWGG | 2 cut(s) | 48, 330 |
| EcoT14I | CCWWGG | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 172 |
| ErhI | CCWWGG | 1 cut(s) | 173 |
| FaeI | CATG | 6 cut(s) | 72, 177, 191, 290, 362, 367 |
| FaiI | YATR | 9 cut(s) | 70, 175, 189, 213, 259, 288, 317, 360, 365 |
| FatI | CATG | 6 cut(s) | 68, 173, 187, 286, 358, 363 |
| FokI | GGATG | 2 cut(s) | 67, 236 |
| FriOI | GRGCYC | 1 cut(s) | 172 |
| FspBI | CTAG | 1 cut(s) | 203 |
| GlaI | GCGC | 1 cut(s) | 92 |
| HapII | CCGG | 1 cut(s) | 194 |
| HgaI | GACGC | 2 cut(s) | 82, 146 |
| HhaI | GCGC | 1 cut(s) | 93 |
| Hin1II | CATG | 6 cut(s) | 72, 177, 191, 290, 362, 367 |
| Hin6I | GCGC | 1 cut(s) | 91 |
| HinP1I | GCGC | 1 cut(s) | 91 |
| HindIII | AAGCTT | 1 cut(s) | 11 |
| HpaII | CCGG | 1 cut(s) | 194 |
| HphI | GGTGA | 5 cut(s) | 10, 88, 238, 319, 347 |
| Hpy166II | GTNNAC | 2 cut(s) | 86, 327 |
| Hpy188I | TCNGA | 3 cut(s) | 136, 156, 301 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 61, 149, 160 |
| Hpy8I | GTNNAC | 2 cut(s) | 86, 327 |
| Hpy99I | CGWCG | 1 cut(s) | 98 |
| HpyAV | CCTTC | 2 cut(s) | 157, 361 |
| HpyCH4V | TGCA | 2 cut(s) | 68, 274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 197 |
| HpyF3I | CTNAG | 2 cut(s) | 250, 300 |
| Hsp92II | CATG | 6 cut(s) | 72, 177, 191, 290, 362, 367 |
| HspAI | GCGC | 1 cut(s) | 91 |
| Kzo9I | GATC | 4 cut(s) | 145, 151, 156, 264 |
| LmnI | GCTCC | 3 cut(s) | 167, 175, 196 |
| LpnPI | CCDG | 8 cut(s) | 35, 46, 62, 145, 207, 247, 317, 344 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeI | CTAG | 1 cut(s) | 203 |
| MaeIII | GTNAC | 2 cut(s) | 179, 335 |
| MalI | GATC | 4 cut(s) | 147, 153, 158, 266 |
| MboI | GATC | 4 cut(s) | 145, 151, 156, 264 |
| MflI | RGATCY | 1 cut(s) | 156 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MluCI | AATT | 1 cut(s) | 37 |
| MnlI | CCTC | 9 cut(s) | 66, 91, 94, 97, 100, 259, 265, 294, 297 |
| MseI | TTAA | 1 cut(s) | 231 |
| MspI | CCGG | 1 cut(s) | 194 |
| MspR9I | CCNGG | 2 cut(s) | 50, 332 |
| Mva1269I | GAATGC | 1 cut(s) | 279 |
| MvaI | CCWGG | 2 cut(s) | 50, 332 |
| MvnI | CGCG | 1 cut(s) | 93 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 197 |
| NcoI | CCATGG | 1 cut(s) | 173 |
| NdeII | GATC | 4 cut(s) | 145, 151, 156, 264 |
| NlaIII | CATG | 6 cut(s) | 72, 177, 191, 290, 362, 367 |
| NmuCI | GTSAC | 1 cut(s) | 335 |
| NspI | RCATGY | 1 cut(s) | 362 |
| PasI | CCCWGGG | 1 cut(s) | 331 |
| PctI | GAATGC | 1 cut(s) | 279 |
| Ple19I | CGATCG | 1 cut(s) | 148 |
| Psp124BI | GAGCTC | 1 cut(s) | 172 |
| Psp6I | CCWGG | 2 cut(s) | 48, 330 |
| PspGI | CCWGG | 2 cut(s) | 48, 330 |
| PsuI | RGATCY | 1 cut(s) | 156 |
| PvuI | CGATCG | 1 cut(s) | 148 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| SacI | GAGCTC | 1 cut(s) | 172 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| Sau3AI | GATC | 4 cut(s) | 145, 151, 156, 264 |
| ScrFI | CCNGG | 2 cut(s) | 50, 332 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SetI | ASST | 4 cut(s) | 15, 172, 251, 372 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| Sse9I | AATT | 1 cut(s) | 37 |
| SspMI | CTAG | 1 cut(s) | 203 |
| SstI | GAGCTC | 1 cut(s) | 172 |
| StyD4I | CCNGG | 2 cut(s) | 48, 330 |
| StyI | CCWWGG | 1 cut(s) | 173 |
| TaqI | TCGA | 1 cut(s) | 96 |
| TasI | AATT | 1 cut(s) | 37 |
| TatI | WGTACW | 1 cut(s) | 30 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TseFI | GTSAC | 1 cut(s) | 335 |
| Tsp45I | GTSAC | 1 cut(s) | 335 |
| TspRI | CASTG | 1 cut(s) | 93 |
| XapI | RAATTY | 1 cut(s) | 37 |
| XceI | RCATGY | 1 cut(s) | 362 |
| XspI | CTAG | 1 cut(s) | 203 |