ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF538 | PF04398 | 18 - 102 | 5.8e-21 | Protein of unknown function, DUF538 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 603 |
| AccI | GTMKAC | 1 cut(s) | 492 |
| AccII | CGCG | 1 cut(s) | 182 |
| AciI | CCGC | 2 cut(s) | 154, 260 |
| AclWI | GGATC | 3 cut(s) | 198, 299, 490 |
| AcoI | YGGCCR | 1 cut(s) | 85 |
| AcuI | CTGAAG | 2 cut(s) | 24, 215 |
| AfaI | GTAC | 3 cut(s) | 134, 143, 210 |
| AflIII | ACRYGT | 1 cut(s) | 623 |
| AgsI | TTSAA | 4 cut(s) | 20, 371, 474, 532 |
| AjiI | CACGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 1 cut(s) | 77 |
| AluBI | AGCT | 6 cut(s) | 169, 174, 306, 374, 479, 513 |
| AluI | AGCT | 6 cut(s) | 169, 174, 306, 374, 479, 513 |
| Alw21I | GWGCWC | 1 cut(s) | 613 |
| Alw26I | GTCTC | 2 cut(s) | 64, 143 |
| AlwI | GGATC | 3 cut(s) | 198, 299, 490 |
| Ama87I | CYCGRG | 1 cut(s) | 612 |
| AoxI | GGCC | 2 cut(s) | 85, 439 |
| ApeKI | GCWGC | 1 cut(s) | 584 |
| AspLEI | GCGC | 1 cut(s) | 182 |
| AsuC2I | CCSGG | 1 cut(s) | 343 |
| AsuHPI | GGTGA | 3 cut(s) | 25, 151, 274 |
| AvaI | CYCGRG | 1 cut(s) | 612 |
| Bbv12I | GWGCWC | 1 cut(s) | 613 |
| BbvI | GCAGC | 1 cut(s) | 596 |
| BccI | CCATC | 2 cut(s) | 72, 77 |
| BceAI | ACGGC | 3 cut(s) | 193, 247, 572 |
| BciT130I | CCWGG | 1 cut(s) | 79 |
| BcnI | CCSGG | 1 cut(s) | 343 |
| BcoDI | GTCTC | 2 cut(s) | 64, 143 |
| BfuAI | ACCTGC | 1 cut(s) | 603 |
| BisI | GCNGC | 2 cut(s) | 260, 585 |
| BlpI | GCTNAGC | 1 cut(s) | 170 |
| BlsI | GCNGC | 2 cut(s) | 261, 586 |
| BmcAI | AGTACT | 1 cut(s) | 134 |
| Bme1390I | CCNGG | 2 cut(s) | 79, 343 |
| BmeT110I | CYCGRG | 1 cut(s) | 612 |
| BmgBI | CACGTC | 1 cut(s) | 235 |
| BmrFI | CCNGG | 2 cut(s) | 79, 343 |
| BmsI | GCATC | 3 cut(s) | 165, 421, 558 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 170 |
| BpuEI | CTTGAG | 1 cut(s) | 420 |
| BpuMI | CCSGG | 1 cut(s) | 343 |
| BsaBI | GATNNNNATC | 1 cut(s) | 314 |
| BsaI | GGTCTC | 1 cut(s) | 143 |
| BsaJI | CCNNGG | 1 cut(s) | 78 |
| BsaWI | WCCGGW | 1 cut(s) | 161 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 98, 128 |
| Bse8I | GATNNNNATC | 1 cut(s) | 314 |
| BseBI | CCWGG | 1 cut(s) | 79 |
| BseDI | CCNNGG | 1 cut(s) | 78 |
| BseGI | GGATG | 3 cut(s) | 88, 244, 436 |
| BseJI | GATNNNNATC | 1 cut(s) | 314 |
| BseMII | CTCAG | 3 cut(s) | 161, 399, 523 |
| BseXI | GCAGC | 1 cut(s) | 596 |
| Bsh1236I | CGCG | 1 cut(s) | 182 |
| BshFI | GGCC | 2 cut(s) | 87, 441 |
| BsiHKAI | GWGCWC | 1 cut(s) | 613 |
| BsiHKCI | CYCGRG | 1 cut(s) | 612 |
| BsiSI | CCGG | 3 cut(s) | 162, 342, 572 |
| BslFI | GGGAC | 1 cut(s) | 358 |
| BsmAI | GTCTC | 2 cut(s) | 64, 143 |
| BsmBI | CGTCTC | 1 cut(s) | 64 |
| BsmFI | GGGAC | 1 cut(s) | 358 |
| BsmI | GAATGC | 1 cut(s) | 201 |
| BsnI | GGCC | 2 cut(s) | 87, 441 |
| Bso31I | GGTCTC | 1 cut(s) | 143 |
| BsoBI | CYCGRG | 1 cut(s) | 612 |
| Bsp1286I | GDGCHC | 1 cut(s) | 613 |
| Bsp143I | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 170 |
| BspACI | CCGC | 2 cut(s) | 154, 260 |
| BspANI | GGCC | 2 cut(s) | 87, 441 |
| BspCNI | CTCAG | 3 cut(s) | 162, 398, 522 |
| BspFNI | CGCG | 1 cut(s) | 182 |
| BspHI | TCATGA | 1 cut(s) | 294 |
| BspMI | ACCTGC | 1 cut(s) | 603 |
| BspPI | GGATC | 3 cut(s) | 198, 299, 490 |
| BspTNI | GGTCTC | 1 cut(s) | 143 |
| BssECI | CCNNGG | 1 cut(s) | 78 |
| BssMI | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| BssNAI | GTATAC | 1 cut(s) | 493 |
| Bst1107I | GTATAC | 1 cut(s) | 493 |
| Bst2UI | CCWGG | 1 cut(s) | 79 |
| Bst4CI | ACNGT | 4 cut(s) | 114, 286, 497, 608 |
| BstDEI | CTNAG | 3 cut(s) | 170, 385, 509 |
| BstF5I | GGATG | 3 cut(s) | 88, 244, 436 |
| BstFNI | CGCG | 1 cut(s) | 182 |
| BstHHI | GCGC | 1 cut(s) | 182 |
| BstKTI | GATC | 7 cut(s) | 57, 186, 193, 246, 294, 318, 485 |
| BstMAI | GTCTC | 2 cut(s) | 64, 143 |
| BstMBI | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 364, 380 |
| BstNI | CCWGG | 1 cut(s) | 79 |
| BstNSI | RCATGY | 2 cut(s) | 584, 627 |
| BstSCI | CCNGG | 2 cut(s) | 77, 341 |
| BstUI | CGCG | 1 cut(s) | 182 |
| BstV1I | GCAGC | 1 cut(s) | 596 |
| BstX2I | RGATCY | 2 cut(s) | 190, 482 |
| BstYI | RGATCY | 2 cut(s) | 190, 482 |
| BstZ17I | GTATAC | 1 cut(s) | 493 |
| BsuRI | GGCC | 2 cut(s) | 87, 441 |
| BtrI | CACGTC | 1 cut(s) | 235 |
| BtsCI | GGATG | 3 cut(s) | 88, 244, 436 |
| BveI | ACCTGC | 1 cut(s) | 603 |
| CciI | TCATGA | 1 cut(s) | 294 |
| CfoI | GCGC | 1 cut(s) | 182 |
| Csp6I | GTAC | 3 cut(s) | 133, 142, 209 |
| CviAII | CATG | 5 cut(s) | 295, 443, 581, 624, 666 |
| CviQI | GTAC | 3 cut(s) | 133, 142, 209 |
| DdeI | CTNAG | 3 cut(s) | 170, 385, 509 |
| DpnI | GATC | 7 cut(s) | 56, 185, 192, 245, 293, 317, 484 |
| DpnII | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| EaeI | YGGCCR | 1 cut(s) | 85 |
| Eco31I | GGTCTC | 1 cut(s) | 143 |
| Eco57I | CTGAAG | 2 cut(s) | 24, 215 |
| Eco88I | CYCGRG | 1 cut(s) | 612 |
| EcoRII | CCWGG | 1 cut(s) | 77 |
| Esp3I | CGTCTC | 1 cut(s) | 64 |
| FaeI | CATG | 5 cut(s) | 298, 446, 584, 627, 669 |
| FaqI | GGGAC | 1 cut(s) | 358 |
| FatI | CATG | 5 cut(s) | 294, 442, 580, 623, 665 |
| FauI | CCCGC | 1 cut(s) | 161 |
| FauNDI | CATATG | 1 cut(s) | 643 |
| FblI | GTMKAC | 1 cut(s) | 492 |
| Fnu4HI | GCNGC | 2 cut(s) | 260, 585 |
| FokI | GGATG | 3 cut(s) | 95, 251, 443 |
| Fsp4HI | GCNGC | 2 cut(s) | 260, 585 |
| GlaI | GCGC | 1 cut(s) | 181 |
| GluI | GCNGC | 2 cut(s) | 260, 585 |
| HaeIII | GGCC | 2 cut(s) | 87, 441 |
| HapII | CCGG | 3 cut(s) | 162, 342, 572 |
| HhaI | GCGC | 1 cut(s) | 182 |
| Hin1II | CATG | 5 cut(s) | 298, 446, 584, 627, 669 |
| Hin6I | GCGC | 1 cut(s) | 180 |
| HinP1I | GCGC | 1 cut(s) | 180 |
| HindIII | AAGCTT | 1 cut(s) | 372 |
| HinfI | GANTC | 4 cut(s) | 90, 470, 505, 548 |
| HpaII | CCGG | 3 cut(s) | 162, 342, 572 |
| HphI | GGTGA | 3 cut(s) | 25, 151, 274 |
| Hpy166II | GTNNAC | 3 cut(s) | 142, 493, 592 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 195, 268, 553, 663 |
| Hpy188III | TCNNGA | 2 cut(s) | 295, 324 |
| Hpy8I | GTNNAC | 3 cut(s) | 142, 493, 592 |
| Hpy99I | CGWCG | 4 cut(s) | 98, 101, 236, 397 |
| HpyAV | CCTTC | 5 cut(s) | 26, 40, 48, 190, 452 |
| HpyCH4III | ACNGT | 4 cut(s) | 114, 286, 497, 608 |
| HpyCH4IV | ACGT | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 3 cut(s) | 584, 629, 641 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 364, 380 |
| HpyF3I | CTNAG | 3 cut(s) | 170, 385, 509 |
| HpySE526I | ACGT | 1 cut(s) | 234 |
| Hsp92II | CATG | 5 cut(s) | 298, 446, 584, 627, 669 |
| HspAI | GCGC | 1 cut(s) | 180 |
| Kzo9I | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| Lsp1109I | GCAGC | 1 cut(s) | 596 |
| LweI | GCATC | 3 cut(s) | 165, 421, 558 |
| MaeII | ACGT | 1 cut(s) | 234 |
| MalI | GATC | 7 cut(s) | 56, 185, 192, 245, 293, 317, 484 |
| MboI | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| MboII | GAAGA | 2 cut(s) | 310, 577 |
| MflI | RGATCY | 2 cut(s) | 190, 482 |
| MhlI | GDGCHC | 1 cut(s) | 613 |
| MnlI | CCTC | 6 cut(s) | 388, 394, 421, 535, 568, 608 |
| MseI | TTAA | 2 cut(s) | 651, 671 |
| MspI | CCGG | 3 cut(s) | 162, 342, 572 |
| MspR9I | CCNGG | 2 cut(s) | 79, 343 |
| Mva1269I | GAATGC | 1 cut(s) | 201 |
| MvaI | CCWGG | 1 cut(s) | 79 |
| MvnI | CGCG | 1 cut(s) | 182 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 364, 380 |
| NciI | CCSGG | 1 cut(s) | 343 |
| NdeI | CATATG | 1 cut(s) | 643 |
| NdeII | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| NlaIII | CATG | 5 cut(s) | 298, 446, 584, 627, 669 |
| NspI | RCATGY | 2 cut(s) | 584, 627 |
| PaeR7I | CTCGAG | 1 cut(s) | 612 |
| PagI | TCATGA | 1 cut(s) | 294 |
| PciI | ACATGT | 1 cut(s) | 623 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 401 |
| PctI | GAATGC | 1 cut(s) | 201 |
| PfeI | GAWTC | 4 cut(s) | 90, 470, 505, 548 |
| PkrI | GCNGC | 2 cut(s) | 261, 586 |
| PscI | ACATGT | 1 cut(s) | 623 |
| Psp6I | CCWGG | 1 cut(s) | 77 |
| PspGI | CCWGG | 1 cut(s) | 77 |
| PspXI | VCTCGAGB | 1 cut(s) | 612 |
| PsuI | RGATCY | 2 cut(s) | 190, 482 |
| RsaI | GTAC | 3 cut(s) | 134, 143, 210 |
| RsaNI | GTAC | 3 cut(s) | 133, 142, 209 |
| SaqAI | TTAA | 2 cut(s) | 651, 671 |
| SatI | GCNGC | 2 cut(s) | 260, 585 |
| Sau3AI | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| ScaI | AGTACT | 1 cut(s) | 134 |
| ScrFI | CCNGG | 2 cut(s) | 79, 343 |
| SduI | GDGCHC | 1 cut(s) | 613 |
| SfaNI | GCATC | 3 cut(s) | 165, 421, 558 |
| Sfr274I | CTCGAG | 1 cut(s) | 612 |
| SlaI | CTCGAG | 1 cut(s) | 612 |
| SmlI | CTYRAG | 2 cut(s) | 435, 612 |
| SmoI | CTYRAG | 2 cut(s) | 435, 612 |
| SsiI | CCGC | 2 cut(s) | 154, 260 |
| SspI | AATATT | 1 cut(s) | 520 |
| StyD4I | CCNGG | 2 cut(s) | 77, 341 |
| TaaI | ACNGT | 4 cut(s) | 114, 286, 497, 608 |
| TaiI | ACGT | 1 cut(s) | 237 |
| TaqI | TCGA | 9 cut(s) | 129, 231, 252, 308, 314, 395, 404, 613, 620 |
| TatI | WGTACW | 2 cut(s) | 132, 141 |
| TauI | GCSGC | 1 cut(s) | 262 |
| TfiI | GAWTC | 4 cut(s) | 90, 470, 505, 548 |
| Tru1I | TTAA | 2 cut(s) | 651, 671 |
| Tru9I | TTAA | 2 cut(s) | 651, 671 |
| TseI | GCWGC | 1 cut(s) | 584 |
| TspDTI | ATGAA | 3 cut(s) | 311, 322, 459 |
| TspGWI | ACGGA | 1 cut(s) | 203 |
| XceI | RCATGY | 2 cut(s) | 584, 627 |
| XhoI | CTCGAG | 1 cut(s) | 612 |
| XmiI | GTMKAC | 1 cut(s) | 492 |
| ZrmI | AGTACT | 1 cut(s) | 134 |