Rmu_sc0004084.1_g000026

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004084.1
OG0000187
Physical Location & Seq
Forward (+)
133897 .. 135231
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004084.1_g000026.1.cds

Sequence Viewer

Length: 1335 bp
atgtcttctgttgatgcaatggctgctagactagcctcttctcttgctatcgctgaaggcaagaggcagattgatttgcgacctaagcagggtaagggtttgcgacaggcaaacgtattcttggtgggcaagctcctcaccactcgggatttcaaggtccagtccttcatggggatgtttcgcaacgcctggagggttaatggttcgctgcaggtggaggaagcagaaggacagagggtgttattcacgctgtcggatccgtctgatcgagttcgaatatggcggggtgccccatgggggtataatcacgtgccggtggctctagctttgtatgatggtatcatgtcggtggagaaagtgcccctagccatggcctcatactggataactcttcaggaaataccaccagcgtttcgatctgaacgtgtcatgactatgatcggctacaagctgggggattttcaggagattaataagaatgctaagaagactgggaaactccggattagggttgagatacctttgcataaaccattgcctttcaagcggtggtacttggtggaagatgcggtcgagtttcgctgccaattccgttatgacaagcttttcggaagatgctctgtatgtggattagtcacgcacgtgggtttgccatgctccgaaccggcgttggatgaagacgatgatgaagccgagagaattgttttgggatcccagaacacggtgtcggagaggagtggtaggggcttgccgggagtttgggcggggtcaacatcggggcatgctagtggtagtgtgctcaatactggtgtaagagctagggttaccaccccgtgtccaccattgatatttcggactccagatcctggtccgagtggggaaccatgtttgaatgttttgtttccaaagcagaagcgacatgttgtggtgcgcgaacttcaggggacagtagacactccagaacgcatcactggcaagcgtcgagccagagaagaaagcctgactatctctcctaagaaactgaaattgagcttggcggtaggtaagagaaacctcactcttgattctgaaaatcttggattggaccctatacaggaggcgactcattctgggagtatgaagcggaagagaggacgaccttctagtagtagaaataagtcgtcgtctgatggcaagcagcagacctcaaaacatgtgagggtaaggcgaagcataagtccccaacgaagaaacaatctgtggggaacattccaacccgaaaaggacggagttggctcttttttaattcctgttacttggggtaaagcttatgtgagagtatatggacttctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

444

Amino Acids

49.52

Weight (kDa)

10.09

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 866
AccI GTMKAC 1 cut(s) 951
AccII CGCG 1 cut(s) 933
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 6 cut(s) 283, 547, 569, 764, 1037, 1123
AclWI GGATC 5 cut(s) 251, 264, 705, 718, 857
AcuI CTGAAG 3 cut(s) 75, 377, 923
AcvI CACGTG 2 cut(s) 310, 643
AdeI CACNNNGTG 1 cut(s) 834
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 9 cut(s) 89, 171, 297, 370, 381, 508, 721, 866, 1093
AflIII ACRYGT 3 cut(s) 424, 919, 1192
AgsI TTSAA 3 cut(s) 154, 544, 892
AjnI CCWGG 2 cut(s) 188, 865
AjuI GAANNNNNNNTTGG 2 cut(s) 1016, 1048
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 7 cut(s) 133, 326, 451, 604, 818, 1032, 1307
AluI AGCT 7 cut(s) 133, 326, 451, 604, 818, 1032, 1307
Alw21I GWGCWC 1 cut(s) 801
AlwI GGATC 5 cut(s) 251, 264, 705, 718, 857
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 501
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 4 cut(s) 23, 208, 582, 1177
ArsI GACNNNNNNTTYG 4 cut(s) 590, 622, 1201, 1233
AseI ATTAAT 1 cut(s) 471
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 3 cut(s) 157, 869, 1084
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 3 cut(s) 157, 869, 1084
BaeGI GKGCMC 2 cut(s) 292, 363
BamHI GGATCC 2 cut(s) 256, 710
BanI GGYRCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 1 cut(s) 1311
BbrPI CACGTG 2 cut(s) 310, 643
BbsI GAAGAC 2 cut(s) 494, 684
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 4 cut(s) 10, 195, 569, 1189
BccI CCATC 2 cut(s) 329, 1163
BciT130I CCWGG 2 cut(s) 190, 867
BcnI CCSGG 1 cut(s) 753
BfaI CTAG 7 cut(s) 27, 32, 323, 365, 786, 819, 1143
BfmI CTRYAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 4 cut(s) 24, 209, 583, 1178
BlsI GCNGC 4 cut(s) 25, 210, 584, 1179
Bme1390I CCNGG 3 cut(s) 190, 753, 867
Bme18I GGWCC 3 cut(s) 157, 869, 1084
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 3 cut(s) 157, 869, 1084
BmiI GGNNCC 5 cut(s) 258, 289, 712, 882, 1086
BmrFI CCNGG 3 cut(s) 190, 753, 867
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 4 cut(s) 4, 556, 605, 975
BmuI ACTGGG 1 cut(s) 501
BpiI GAAGAC 2 cut(s) 494, 684
BpmI CTGGAG 3 cut(s) 211, 843, 942
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 753
BsaAI YACGTR 2 cut(s) 310, 643
BsaJI CCNNGG 2 cut(s) 293, 369
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 994, 1024
Bsc4I CCNNNNNNNGG 9 cut(s) 89, 171, 297, 370, 381, 508, 721, 866, 1093
Bse118I RCCGGY 2 cut(s) 313, 664
Bse1I ACTGG 5 cut(s) 160, 386, 496, 811, 976
Bse3DI GCAATG 2 cut(s) 24, 533
BseAI TCCGGA 1 cut(s) 501
BseBI CCWGG 2 cut(s) 190, 867
BseDI CCNNGG 2 cut(s) 293, 369
BseGI GGATG 2 cut(s) 180, 679
BseLI CCNNNNNNNGG 9 cut(s) 89, 171, 297, 370, 381, 508, 721, 866, 1093
BseMI GCAATG 2 cut(s) 24, 533
BseNI ACTGG 5 cut(s) 160, 386, 496, 811, 976
BseRI GAGGAG 2 cut(s) 125, 748
BseSI GKGCMC 2 cut(s) 292, 363
BseXI GCAGC 4 cut(s) 10, 195, 569, 1189
BseYI CCCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 933
Bsh1285I CGRYCG 1 cut(s) 573
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 573
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 4 cut(s) 314, 502, 665, 752
BslFI GGGAC 2 cut(s) 958, 1203
BslI CCNNNNNNNGG 9 cut(s) 89, 171, 297, 370, 381, 508, 721, 866, 1093
BsmFI GGGAC 2 cut(s) 958, 1203
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 3 cut(s) 292, 363, 801
Bsp13I TCCGGA 1 cut(s) 501
Bsp143I GATC 6 cut(s) 256, 265, 416, 438, 710, 862
Bsp19I CCATGG 2 cut(s) 293, 369
BspACI CCGC 6 cut(s) 283, 547, 569, 764, 1037, 1123
BspANI GGCC 1 cut(s) 374
BspEI TCCGGA 1 cut(s) 501
BspFNI CGCG 1 cut(s) 933
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 5 cut(s) 258, 289, 712, 882, 1086
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 5 cut(s) 251, 264, 705, 718, 857
BspT104I TTCGAA 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 24, 533
BsrFI RCCGGY 2 cut(s) 313, 664
BsrI ACTGG 5 cut(s) 160, 386, 496, 811, 976
BssAI RCCGGY 2 cut(s) 313, 664
BssECI CCNNGG 2 cut(s) 293, 369
BssMI GATC 6 cut(s) 256, 265, 416, 438, 710, 862
BssT1I CCWWGG 2 cut(s) 293, 369
Bst2UI CCWGG 2 cut(s) 190, 867
Bst4CI ACNGT 2 cut(s) 724, 949
Bst6I CTCTTC 3 cut(s) 43, 396, 1121
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBAI YACGTR 2 cut(s) 310, 643
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 5 cut(s) 131, 749, 783, 977, 1175
BstDEI CTNAG 3 cut(s) 84, 483, 1014
BstDSI CCRYGG 2 cut(s) 293, 369
BstEII GGTNACC 1 cut(s) 823
BstF5I GGATG 2 cut(s) 180, 679
BstFNI CGCG 1 cut(s) 933
BstHHI GCGC 1 cut(s) 933
BstKTI GATC 6 cut(s) 259, 268, 419, 441, 713, 865
BstMBI GATC 6 cut(s) 256, 265, 416, 438, 710, 862
BstMCI CGRYCG 1 cut(s) 573
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 85, 544, 972
BstNI CCWGG 2 cut(s) 190, 867
BstNSI RCATGY 3 cut(s) 785, 923, 1196
BstPI GGTNACC 1 cut(s) 823
BstSCI CCNGG 3 cut(s) 188, 751, 865
BstSFI CTRYAG 1 cut(s) 209
BstSLI GKGCMC 2 cut(s) 292, 363
BstUI CGCG 1 cut(s) 933
BstV1I GCAGC 4 cut(s) 10, 195, 569, 1189
BstV2I GAAGAC 2 cut(s) 494, 684
BstX2I RGATCY 3 cut(s) 256, 710, 862
BstYI RGATCY 3 cut(s) 256, 710, 862
BsuRI GGCC 1 cut(s) 374
BtgI CCRYGG 2 cut(s) 293, 369
BtsCI GGATG 2 cut(s) 180, 679
BtsIMutI CAGTG 1 cut(s) 969
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 5 cut(s) 131, 749, 783, 977, 1175
CaiI CAGNNNCTG 1 cut(s) 866
CciI TCATGA 1 cut(s) 429
CfoI GCGC 1 cut(s) 933
Cfr10I RCCGGY 2 cut(s) 313, 664
Cfr13I GGNCC 3 cut(s) 157, 869, 1084
CseI GACGC 1 cut(s) 968
Csp6I GTAC 1 cut(s) 553
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 3 cut(s) 84, 483, 1014
DpnI GATC 6 cut(s) 258, 267, 418, 440, 712, 864
DpnII GATC 6 cut(s) 256, 265, 416, 438, 710, 862
DraIII CACNNNGTG 1 cut(s) 834
Eam1104I CTCTTC 3 cut(s) 43, 396, 1121
EarI CTCTTC 3 cut(s) 43, 396, 1121
Eco130I CCWWGG 2 cut(s) 293, 369
Eco47I GGWCC 3 cut(s) 157, 869, 1084
Eco57I CTGAAG 3 cut(s) 75, 377, 923
Eco72I CACGTG 2 cut(s) 310, 643
Eco88I CYCGRG 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 823
EcoO65I GGTNACC 1 cut(s) 823
EcoRII CCWGG 2 cut(s) 188, 865
EcoT14I CCWWGG 2 cut(s) 293, 369
ErhI CCWWGG 2 cut(s) 293, 369
FaqI GGGAC 2 cut(s) 958, 1203
FauI CCCGC 2 cut(s) 276, 757
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 4 cut(s) 24, 209, 583, 1178
FokI GGATG 2 cut(s) 187, 686
Fsp4HI GCNGC 4 cut(s) 24, 209, 583, 1178
FspBI CTAG 7 cut(s) 27, 32, 323, 365, 786, 819, 1143
GlaI GCGC 1 cut(s) 932
GluI GCNGC 4 cut(s) 24, 209, 583, 1178
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 3 cut(s) 211, 843, 942
HaeIII GGCC 1 cut(s) 374
HapII CCGG 4 cut(s) 314, 502, 665, 752
HgaI GACGC 1 cut(s) 968
HhaI GCGC 1 cut(s) 933
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HincII GTYRAC 1 cut(s) 771
HindII GTYRAC 1 cut(s) 771
HindIII AAGCTT 2 cut(s) 602, 1305
HinfI GANTC 3 cut(s) 856, 1064, 1102
HpaII CCGG 4 cut(s) 314, 502, 665, 752
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 3 cut(s) 771, 839, 952
Hpy188III TCNNGA 8 cut(s) 146, 395, 430, 464, 502, 860, 959, 1061
Hpy8I GTNNAC 3 cut(s) 771, 839, 952
Hpy99I CGWCG 2 cut(s) 984, 1165
HpyAV CCTTC 4 cut(s) 50, 175, 221, 1149
HpyCH4III ACNGT 2 cut(s) 724, 949
HpyCH4IV ACGT 4 cut(s) 114, 309, 424, 642
HpyCH4V TGCA 3 cut(s) 17, 211, 526
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 85, 544, 972
HpyF3I CTNAG 3 cut(s) 84, 483, 1014
HpySE526I ACGT 4 cut(s) 114, 309, 424, 642
HspAI GCGC 1 cut(s) 931
Kpn2I TCCGGA 1 cut(s) 501
Kzo9I GATC 6 cut(s) 256, 265, 416, 438, 710, 862
LmnI GCTCC 2 cut(s) 138, 662
Lsp1109I GCAGC 4 cut(s) 10, 195, 569, 1189
LweI GCATC 4 cut(s) 4, 556, 605, 975
MaeI CTAG 7 cut(s) 27, 32, 323, 365, 786, 819, 1143
MaeII ACGT 4 cut(s) 114, 309, 424, 642
MaeIII GTNAC 3 cut(s) 634, 823, 1291
MalI GATC 6 cut(s) 258, 267, 418, 440, 712, 864
MboI GATC 6 cut(s) 256, 265, 416, 438, 710, 862
MboII GAAGA 9 cut(s) 30, 383, 499, 575, 624, 689, 1004, 1138, 1239
MflI RGATCY 3 cut(s) 256, 710, 862
MhlI GDGCHC 3 cut(s) 292, 363, 801
MluCI AATT 4 cut(s) 587, 699, 1025, 1284
MlyI GAGTC 2 cut(s) 850, 1096
MmeI TCCRAC 4 cut(s) 234, 651, 708, 1276
MroI TCCGGA 1 cut(s) 501
MseI TTAA 3 cut(s) 198, 471, 1283
MslI CAYNNNNRTG 5 cut(s) 173, 347, 434, 641, 786
MspI CCGG 4 cut(s) 314, 502, 665, 752
MspR9I CCNGG 3 cut(s) 190, 753, 867
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 2 cut(s) 190, 867
MvnI CGCG 1 cut(s) 933
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 85, 544, 972
NciI CCSGG 1 cut(s) 753
NcoI CCATGG 2 cut(s) 293, 369
NdeII GATC 6 cut(s) 256, 265, 416, 438, 710, 862
NlaIV GGNNCC 5 cut(s) 258, 289, 712, 882, 1086
NmeAIII GCCGAG 1 cut(s) 718
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 3 cut(s) 785, 923, 1196
NspV TTCGAA 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 641
PaeI GCATGC 1 cut(s) 785
PagI TCATGA 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 202
PciI ACATGT 2 cut(s) 919, 1192
PcsI WCGNNNNNNNCGW 1 cut(s) 421
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 1064
PflMI CCANNNNNTGG 1 cut(s) 866
PkrI GCNGC 4 cut(s) 25, 210, 584, 1179
PleI GAGTC 2 cut(s) 850, 1096
PmaCI CACGTG 2 cut(s) 310, 643
PmlI CACGTG 2 cut(s) 310, 643
PpsI GAGTC 2 cut(s) 850, 1096
Ppu21I YACGTR 2 cut(s) 310, 643
PscI ACATGT 2 cut(s) 919, 1192
PshBI ATTAAT 1 cut(s) 471
Psp6I CCWGG 2 cut(s) 188, 865
PspCI CACGTG 2 cut(s) 310, 643
PspEI GGTNACC 1 cut(s) 823
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 2 cut(s) 188, 865
PspN4I GGNNCC 5 cut(s) 258, 289, 712, 882, 1086
PspPI GGNCC 3 cut(s) 157, 869, 1084
PstI CTGCAG 1 cut(s) 213
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 3 cut(s) 256, 710, 862
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 5 cut(s) 173, 347, 434, 641, 786
SaqAI TTAA 3 cut(s) 198, 471, 1283
SatI GCNGC 4 cut(s) 24, 209, 583, 1178
Sau3AI GATC 6 cut(s) 256, 265, 416, 438, 710, 862
Sau96I GGNCC 3 cut(s) 157, 869, 1084
SchI GAGTC 2 cut(s) 850, 1096
ScrFI CCNGG 3 cut(s) 190, 753, 867
SduI GDGCHC 3 cut(s) 292, 363, 801
SfaNI GCATC 4 cut(s) 4, 556, 605, 975
SfcI CTRYAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 3 cut(s) 157, 869, 1084
SmiMI CAYNNNNRTG 5 cut(s) 173, 347, 434, 641, 786
SphI GCATGC 1 cut(s) 785
Sse9I AATT 4 cut(s) 587, 699, 1025, 1284
SsiI CCGC 6 cut(s) 283, 547, 569, 764, 1037, 1123
SspMI CTAG 7 cut(s) 27, 32, 323, 365, 786, 819, 1143
StyD4I CCNGG 3 cut(s) 188, 751, 865
StyI CCWWGG 2 cut(s) 293, 369
TaaI ACNGT 2 cut(s) 724, 949
TaiI ACGT 4 cut(s) 117, 312, 427, 645
TaqI TCGA 5 cut(s) 268, 274, 415, 573, 982
TasI AATT 4 cut(s) 587, 699, 1025, 1284
TfiI GAWTC 1 cut(s) 1064
Tru1I TTAA 3 cut(s) 198, 471, 1283
Tru9I TTAA 3 cut(s) 198, 471, 1283
TscAI CASTG 1 cut(s) 976
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 4 cut(s) 23, 208, 582, 1177
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 4 cut(s) 157, 690, 702, 1133
TspGWI ACGGA 3 cut(s) 249, 581, 1281
TspRI CASTG 1 cut(s) 976
Van91I CCANNNNNTGG 1 cut(s) 866
VpaK11BI GGWCC 3 cut(s) 157, 869, 1084
VspI ATTAAT 1 cut(s) 471
XceI RCATGY 3 cut(s) 785, 923, 1196
XmiI GTMKAC 1 cut(s) 951
XspI CTAG 7 cut(s) 27, 32, 323, 365, 786, 819, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.