Rorug05G0562000

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
75325104 .. 75327319
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0562000.1

Sequence Viewer

Length: 801 bp
ATGTTGATGGTTTATGCTCCAAGAGCTGTTACATGTCTAGATTCTCATATACTGAATGAGACATTATTACCCTGTAAGAATACACATGTGAATTCTTTAAACAATGTTTCAATCGGTCTTGGCCCAATTCGAGCTCCTTGTAGTTCTATATTGTCCGCTTCTTCGTTTTATTGGAAAAGCCGAAATCAGCTGAGCAGTACCAAGAAATGGCTATGCCAGATGCATGATTCAATTCCATCAGATGACGAGTATCGATCATCGAGGAACATAGCAATCAGTTTGTTCAGGCGGTACAGGAATGTGCTTGACCGTGGAGGAGGTGACAACCTAAAAGAGTTCATCAGTGCTGGGGTAAATGCGTATGCACTGGGATGCACGGATGAGGGATTGAGAAAAGAGCTTATTGATATGAAGCAATCTGGGGTTGAAATTGAAGCAATGGAGAGCTATAGTGGAAGCACCAGTTTGAAATCCAAGATTGCATCAGGGGAGATTGATGAGTGCATCCTGTGGTTGAGCATTATATTTATCACCATCTTGTGTACACCACAACCGACAATAGTTAGATGGTCATCCACACCTCCAGTGTCAGATGAAGAAAGGCTCAAGTGGAAAGGTTTTTGTGCGGTCATAGCAAATGCTTATTACTTGAGGGGAATGGCATGGCTTCCCGTAAAGACTCTTCAACTAGAGCAAATGGCAGTAGTTGGACAAGCTGAGGAACCATCTGTTGTTGCAAGTCGAATGCGATTAGTGTTTAGCACACTCGAGGTTGTGAGTCCACAGTGGCCTAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.66

Weight (kDa)

8.08

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7876 PF25286 75 - 264 3.2e-106 Domain of unknown function (DUF7876)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 3 cut(s) 156, 289, 626
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 3 cut(s) 199, 293, 544
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 2 cut(s) 32, 85
AgsI TTSAA 6 cut(s) 111, 231, 428, 434, 469, 686
AluBI AGCT 6 cut(s) 26, 134, 190, 400, 447, 716
AluI AGCT 6 cut(s) 26, 134, 190, 400, 447, 716
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 2 cut(s) 121, 788
ApoI RAATTY 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 332, 523
AvaI CYCGRG 1 cut(s) 767
BanII GRGCYC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
Bbv12I GWGCWC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 717
BccI CCATC 4 cut(s) 244, 542, 561, 733
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 38, 689
BfmI CTRYAG 1 cut(s) 448
BlpI GCTNAGC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 767
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 723
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 4 cut(s) 210, 362, 491, 513
BmuI ACTGGG 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 590, 670
Bsa29I ATCGAT 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 571
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 3 cut(s) 372, 462, 584
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 571
BseCI ATCGAT 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 4 cut(s) 377, 385, 504, 572
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 182, 708
BseNI ACTGG 3 cut(s) 372, 462, 584
BseRI GAGGAG 1 cut(s) 330
BseYI CCCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 123, 790
BshVI ATCGAT 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 767
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 2 cut(s) 123, 790
BsoBI CYCGRG 1 cut(s) 767
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 1 cut(s) 254
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 3 cut(s) 156, 289, 626
BspANI GGCC 2 cut(s) 123, 790
BspCNI CTCAG 2 cut(s) 183, 709
BspDI ATCGAT 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 723
BsrDI GCAATG 1 cut(s) 444
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 3 cut(s) 372, 462, 584
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 311, 786
Bst6I CTCTTC 1 cut(s) 687
BstAUI TGTACA 1 cut(s) 542
BstDEI CTNAG 2 cut(s) 191, 717
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 4 cut(s) 377, 385, 504, 572
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 2 cut(s) 23, 632
BstNSI RCATGY 2 cut(s) 36, 89
BstSFI CTRYAG 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 253
BsuRI GGCC 2 cut(s) 123, 790
BsuTUI ATCGAT 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 4 cut(s) 377, 385, 504, 572
BtsIMutI CAGTG 4 cut(s) 349, 365, 591, 791
Cfr13I GGNCC 1 cut(s) 122
ClaI ATCGAT 1 cut(s) 253
Csp6I GTAC 3 cut(s) 198, 292, 543
CviAII CATG 4 cut(s) 33, 86, 224, 663
CviQI GTAC 3 cut(s) 198, 292, 543
DdeI CTNAG 2 cut(s) 191, 717
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
DraI TTTAAA 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Ecl136II GAGCTC 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 4 cut(s) 36, 89, 227, 666
FatI CATG 4 cut(s) 32, 85, 223, 662
FokI GGATG 4 cut(s) 384, 392, 491, 559
FriOI GRGCYC 1 cut(s) 136
FspBI CTAG 2 cut(s) 38, 689
GsaI CCCAGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 2 cut(s) 123, 790
Hin1II CATG 4 cut(s) 36, 89, 227, 666
HinfI GANTC 4 cut(s) 41, 227, 679, 778
HphI GGTGA 2 cut(s) 332, 523
Hpy166II GTNNAC 3 cut(s) 543, 545, 782
Hpy188I TCNGA 2 cut(s) 241, 592
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 543, 545, 782
HpyCH4III ACNGT 2 cut(s) 311, 786
HpyCH4V TGCA 6 cut(s) 223, 365, 375, 482, 504, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 632
HpyF3I CTNAG 2 cut(s) 191, 717
Hsp92II CATG 4 cut(s) 36, 89, 227, 666
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 22, 139
LweI GCATC 4 cut(s) 210, 362, 491, 513
MaeI CTAG 2 cut(s) 38, 689
MaeIII GTNAC 2 cut(s) 28, 320
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 3 cut(s) 153, 608, 674
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 4 cut(s) 91, 126, 231, 429
MlyI GAGTC 2 cut(s) 673, 787
MmeI TCCRAC 1 cut(s) 688
MnlI CCTC 8 cut(s) 255, 308, 311, 376, 591, 645, 712, 763
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 370
MspA1I CMGCKG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 750
MwoI GCNNNNNNNGC 2 cut(s) 23, 632
NdeII GATC 1 cut(s) 254
NlaIII CATG 4 cut(s) 36, 89, 227, 666
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 2 cut(s) 36, 89
PaeR7I CTCGAG 1 cut(s) 767
PciI ACATGT 2 cut(s) 32, 85
PctI GAATGC 1 cut(s) 750
PfeI GAWTC 2 cut(s) 41, 227
PflMI CCANNNNNTGG 1 cut(s) 207
PleI GAGTC 2 cut(s) 673, 786
PpsI GAGTC 2 cut(s) 673, 786
PscI ACATGT 2 cut(s) 32, 85
Psp124BI GAGCTC 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 723
PspPI GGNCC 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 3 cut(s) 199, 293, 544
RsaNI GTAC 3 cut(s) 198, 292, 543
RseI CAYNNNNRTG 1 cut(s) 370
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 98
Sau3AI GATC 1 cut(s) 254
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 2 cut(s) 673, 787
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 4 cut(s) 210, 362, 491, 513
SfcI CTRYAG 1 cut(s) 448
Sfr274I CTCGAG 1 cut(s) 767
SlaI CTCGAG 1 cut(s) 767
SmiMI CAYNNNNRTG 1 cut(s) 370
SmlI CTYRAG 3 cut(s) 605, 649, 767
SmoI CTYRAG 3 cut(s) 605, 649, 767
Sse9I AATT 4 cut(s) 91, 126, 231, 429
SsiI CCGC 3 cut(s) 156, 289, 626
SspMI CTAG 2 cut(s) 38, 689
SstI GAGCTC 1 cut(s) 136
TaaI ACNGT 2 cut(s) 311, 786
TaqI TCGA 5 cut(s) 130, 253, 260, 742, 768
TaqII GACCGA 1 cut(s) 104
TasI AATT 4 cut(s) 91, 126, 231, 429
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 2 cut(s) 41, 227
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 4 cut(s) 349, 372, 591, 791
TseFI GTSAC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 3 cut(s) 328, 425, 609
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 4 cut(s) 349, 372, 591, 791
Van91I CCANNNNNTGG 1 cut(s) 207
XapI RAATTY 1 cut(s) 91
XbaI TCTAGA 1 cut(s) 37
XceI RCATGY 2 cut(s) 36, 89
XhoI CTCGAG 1 cut(s) 767
XspI CTAG 2 cut(s) 38, 689
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.