FvH4_1g20170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000187
Physical Location & Seq
Reverse (-)
12407675 .. 12408076
402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20170.t1

Sequence Viewer

Length: 402 bp
ATGGAGTTTCACACCCCAGATCCTGATGTTCCTGAAGCACTGACTCGTGATCCCACTGGCATGAAGGCAAGACGTCATGTTGTCATTGTCCGGCCAATCTCAATGGATAACGTCAGGGTAGGGAGGATGAGAATGCTATATATAATTAAGCTTATAATTAATATTAATAGAAAGAACCTGCAATTGAGTTTAGTAGGTTGGAGAAAGAACCTAAACTTGGAGCCTGAAAGTTTAGGGTTGGTGCATGCGGAAGCTGAGGCCTTGTCTGAGGCAGATAAGAGGAGGAAGAGAGGTCGGCACGCTGGGAACAAGACCAAGCTTCCGTATTGGGAAAAGAAGGCTCTTCTTGAGGATGCAACCAAGAAACAATCAACTCGGAGGAATCTCATATGGAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.51

Weight (kDa)

10.63

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AatII GACGTC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 186
AciI CCGC 1 cut(s) 248
AclWI GGATC 2 cut(s) 14, 44
AcoI YGGCCR 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 3 cut(s) 151, 254, 319
AluI AGCT 3 cut(s) 151, 254, 319
AlwI GGATC 2 cut(s) 14, 44
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 2 cut(s) 92, 258
AseI ATTAAT 2 cut(s) 159, 165
BauI CACGAG 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 222
BmsI GCATC 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 61
BseGI GGATG 2 cut(s) 132, 358
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 246, 258
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 2 cut(s) 94, 260
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 217
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 2 cut(s) 94, 260
Bsp143I GATC 2 cut(s) 19, 49
BspACI CCGC 1 cut(s) 248
BspANI GGCC 2 cut(s) 94, 260
BspCNI CTCAG 2 cut(s) 247, 259
BspLI GGNNCC 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 2 cut(s) 14, 44
BspQI GCTCTTC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 61
BssMI GATC 2 cut(s) 19, 49
BssNI GRCGYC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 45
Bst6I CTCTTC 2 cut(s) 281, 348
BstACI GRCGYC 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 246, 300
BstDEI CTNAG 2 cut(s) 255, 267
BstF5I GGATG 2 cut(s) 132, 358
BstKTI GATC 2 cut(s) 22, 52
BstMBI GATC 2 cut(s) 19, 49
BstNSI RCATGY 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 2 cut(s) 94, 260
BtsCI GGATG 2 cut(s) 132, 358
BtsIMutI CAGTG 2 cut(s) 38, 54
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 246, 300
CaiI CAGNNNCTG 1 cut(s) 23
CviAII CATG 3 cut(s) 61, 77, 245
CviJI RGCY 7 cut(s) 94, 151, 223, 254, 260, 319, 341
CviKI_1 RGCY 7 cut(s) 94, 151, 223, 254, 260, 319, 341
DdeI CTNAG 2 cut(s) 255, 267
DpnI GATC 2 cut(s) 21, 51
DpnII GATC 2 cut(s) 19, 49
EaeI YGGCCR 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 281, 348
EarI CTCTTC 2 cut(s) 281, 348
Eco147I AGGCCT 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 54
FaeI CATG 3 cut(s) 64, 80, 248
FaiI YATR 9 cut(s) 62, 78, 139, 141, 143, 155, 246, 389, 391
FatI CATG 3 cut(s) 60, 76, 244
FauNDI CATATG 1 cut(s) 389
FokI GGATG 2 cut(s) 139, 365
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 94, 260
HapII CCGG 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 3 cut(s) 64, 80, 248
HindIII AAGCTT 2 cut(s) 149, 317
HinfI GANTC 2 cut(s) 43, 382
HpaII CCGG 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 268, 378
Hpy188III TCNNGA 4 cut(s) 23, 32, 47, 347
HpyAV CCTTC 2 cut(s) 58, 331
HpyCH4IV ACGT 2 cut(s) 73, 111
HpyCH4V TGCA 3 cut(s) 181, 244, 356
HpyF3I CTNAG 2 cut(s) 255, 267
HpySE526I ACGT 2 cut(s) 73, 111
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 3 cut(s) 64, 80, 248
Kzo9I GATC 2 cut(s) 19, 49
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 9 cut(s) 30, 36, 42, 45, 100, 104, 191, 237, 288
LweI GCATC 1 cut(s) 343
MaeII ACGT 2 cut(s) 73, 111
MalI GATC 2 cut(s) 21, 51
MboI GATC 2 cut(s) 19, 49
MboII GAAGA 2 cut(s) 298, 335
MfeI CAATTG 1 cut(s) 182
MflI RGATCY 1 cut(s) 19
MluCI AATT 3 cut(s) 144, 156, 182
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 8 cut(s) 117, 250, 262, 273, 276, 284, 343, 372
MseI TTAA 3 cut(s) 147, 159, 165
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 91
MunI CAATTG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 138
NdeI CATATG 1 cut(s) 389
NdeII GATC 2 cut(s) 19, 49
NlaIII CATG 3 cut(s) 64, 80, 248
NlaIV GGNNCC 1 cut(s) 222
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 382
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PshBI ATTAAT 2 cut(s) 159, 165
PsiI TTATAA 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 147, 159, 165
Sau3AI GATC 2 cut(s) 19, 49
SchI GAGTC 1 cut(s) 37
SetI ASST 9 cut(s) 76, 114, 153, 180, 199, 213, 256, 295, 321
SfaNI GCATC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 248
Sse9I AATT 3 cut(s) 144, 156, 182
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 1 cut(s) 248
SspI AATATT 1 cut(s) 163
StuI AGGCCT 1 cut(s) 260
TaiI ACGT 2 cut(s) 76, 114
TasI AATT 3 cut(s) 144, 156, 182
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 3 cut(s) 147, 159, 165
Tru9I TTAA 3 cut(s) 147, 159, 165
TscAI CASTG 2 cut(s) 45, 61
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 2 cut(s) 45, 61
VspI ATTAAT 2 cut(s) 159, 165
XceI RCATGY 1 cut(s) 248
ZraI GACGTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.