Rmu_co8067766.1_g000001

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8067766.1
OG0000187
Physical Location & Seq
Forward (+)
1 .. 574
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8067766.1_g000001.1.cds

Sequence Viewer

Length: 574 bp
gtattcggatctggcgccggtagccttagcatggtacgatggcattatgccggcggagaaggtgccactgaccttggcatcgtactgggtaactcttcagggtatcccactggctttccgatctgaatgtgttatgaccatgatcggttatacgctgggggatttccaggaaattgataagaatgctaagaagattgggaagctgcggattcgggtggagatcccgttgaacaaaccattacccttcaagcggtggtatttggtggaggacaaggttgaatttcgatgtcagttcaagtatgacaaaaattttgggagatgctctgtgtgtggtcttgttatgcatgtgggtttgccgtgctcggggccgacactagacgaagatgaagatgaagctgaacgcaccgttctggggtcaaaggatacggggccggaggcgaatgtaggaggcttgccggtgggaactctggccgggtcagcttctggtactgccagtagcagtggactccatactggagcgagaactagggtttctaccccatgcccacccttggtttttccaacgccggatcct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

191

Amino Acids

20.74

Weight (kDa)

5.74

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 14, 62
AciI CCGC 3 cut(s) 54, 206, 251
AclWI GGATC 3 cut(s) 16, 215, 564
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 2 cut(s) 279, 308
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 3 cut(s) 36, 84, 488
AfiI CCNNNNNNNGG 5 cut(s) 31, 250, 363, 412, 551
AgsI TTSAA 4 cut(s) 230, 248, 279, 296
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 203, 396, 480
AluI AGCT 3 cut(s) 203, 396, 480
Alw21I GWGCWC 1 cut(s) 363
AlwI GGATC 3 cut(s) 16, 215, 564
AlwNI CAGNNNCTG 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 3 cut(s) 366, 429, 469
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 279, 308
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 366, 429
AsuC2I CCSGG 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 362
BamHI GGATCC 1 cut(s) 569
BanI GGYRCC 2 cut(s) 14, 62
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 2 cut(s) 114, 416
BcnI CCSGG 1 cut(s) 473
BfaI CTAG 2 cut(s) 375, 526
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 2 cut(s) 114, 416
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 168, 473
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 366, 429
BmiI GGNNCC 5 cut(s) 16, 64, 367, 430, 571
BmrFI CCNGG 2 cut(s) 168, 473
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 87, 309
BmuI ACTGGG 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 535
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 73, 550
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 250, 363, 412, 551
Bse118I RCCGGY 3 cut(s) 17, 50, 455
Bse1I ACTGG 4 cut(s) 90, 115, 493, 518
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 73, 550
BseLI CCNNNNNNNGG 5 cut(s) 31, 250, 363, 412, 551
BseNI ACTGG 4 cut(s) 90, 115, 493, 518
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 3 cut(s) 368, 431, 471
BshNI GGYRCC 2 cut(s) 14, 62
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 6 cut(s) 18, 51, 432, 456, 472, 567
BslI CCNNNNNNNGG 5 cut(s) 31, 250, 363, 412, 551
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 3 cut(s) 368, 431, 471
BsoBI CYCGRG 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 5 cut(s) 8, 120, 142, 220, 569
BspACI CCGC 3 cut(s) 54, 206, 251
BspANI GGCC 3 cut(s) 368, 431, 471
BspLI GGNNCC 5 cut(s) 16, 64, 367, 430, 571
BspPI GGATC 3 cut(s) 16, 215, 564
BspT107I GGYRCC 2 cut(s) 14, 62
BsrFI RCCGGY 3 cut(s) 17, 50, 455
BsrI ACTGG 4 cut(s) 90, 115, 493, 518
BssAI RCCGGY 3 cut(s) 17, 50, 455
BssECI CCNNGG 2 cut(s) 73, 550
BssMI GATC 5 cut(s) 8, 120, 142, 220, 569
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 73, 550
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 52, 453
BstDEI CTNAG 2 cut(s) 26, 187
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 5 cut(s) 11, 123, 145, 223, 572
BstMBI GATC 5 cut(s) 8, 120, 142, 220, 569
BstMWI GCNNNNNNNGC 2 cut(s) 21, 477
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 166, 471
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 3 cut(s) 8, 220, 569
BstYI RGATCY 3 cut(s) 8, 220, 569
BsuI GTATCC 2 cut(s) 114, 416
BsuRI GGCC 3 cut(s) 368, 431, 471
BtsI GCAGTG 1 cut(s) 506
BtsIMutI CAGTG 3 cut(s) 66, 108, 506
Cac8I GCNNGC 2 cut(s) 52, 453
CaiI CAGNNNCTG 1 cut(s) 483
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 3 cut(s) 17, 50, 455
Cfr13I GGNCC 2 cut(s) 366, 429
Csp6I GTAC 3 cut(s) 35, 83, 487
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 4 cut(s) 31, 140, 345, 541
CviJI RGCY 9 cut(s) 24, 114, 203, 368, 396, 431, 451, 471, 480
CviKI_1 RGCY 9 cut(s) 24, 114, 203, 368, 396, 431, 451, 471, 480
CviQI GTAC 3 cut(s) 35, 83, 487
DdeI CTNAG 2 cut(s) 26, 187
DinI GGCGCC 1 cut(s) 16
DpnI GATC 5 cut(s) 10, 122, 144, 222, 571
DpnII GATC 5 cut(s) 8, 120, 142, 220, 569
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 73, 550
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 73, 550
EcoT22I ATGCAT 1 cut(s) 346
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 73, 550
FaeI CATG 4 cut(s) 34, 143, 348, 544
FatI CATG 4 cut(s) 30, 139, 344, 540
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 375, 526
GlaI GCGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 535
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 3 cut(s) 368, 431, 471
HapII CCGG 6 cut(s) 18, 51, 432, 456, 472, 567
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 34, 143, 348, 544
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 2 cut(s) 209, 505
HpaII CCGG 6 cut(s) 18, 51, 432, 456, 472, 567
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 3 cut(s) 8, 120, 125
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 2 cut(s) 53, 254
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 477
HpyF3I CTNAG 2 cut(s) 26, 187
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 34, 143, 348, 544
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 8, 120, 142, 220, 569
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 87, 309
MaeI CTAG 2 cut(s) 375, 526
MaeIII GTNAC 1 cut(s) 89
MalI GATC 5 cut(s) 10, 122, 144, 222, 571
MboI GATC 5 cut(s) 8, 120, 142, 220, 569
MboII GAAGA 4 cut(s) 87, 203, 393, 399
MflI RGATCY 3 cut(s) 8, 220, 569
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 172, 279, 308
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 1 cut(s) 499
MnlI CCTC 3 cut(s) 260, 428, 441
Mph1103I ATGCAT 1 cut(s) 346
MroNI GCCGGC 1 cut(s) 50
MspI CCGG 6 cut(s) 18, 51, 432, 456, 472, 567
MspR9I CCNGG 2 cut(s) 168, 473
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 21, 477
NaeI GCCGGC 1 cut(s) 52
NarI GGCGCC 1 cut(s) 15
NciI CCSGG 1 cut(s) 473
NdeII GATC 5 cut(s) 8, 120, 142, 220, 569
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 4 cut(s) 34, 143, 348, 544
NlaIV GGNNCC 5 cut(s) 16, 64, 367, 430, 571
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 348
PctI GAATGC 1 cut(s) 188
PdiI GCCGGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 499
PluTI GGCGCC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 5 cut(s) 16, 64, 367, 430, 571
PspPI GGNCC 2 cut(s) 366, 429
PstNI CAGNNNCTG 1 cut(s) 483
PsuI RGATCY 3 cut(s) 8, 220, 569
RsaI GTAC 3 cut(s) 36, 84, 488
RsaNI GTAC 3 cut(s) 35, 83, 487
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 5 cut(s) 8, 120, 142, 220, 569
Sau96I GGNCC 2 cut(s) 366, 429
SchI GAGTC 1 cut(s) 499
ScrFI CCNGG 2 cut(s) 168, 473
SduI GDGCHC 1 cut(s) 363
SetI ASST 6 cut(s) 64, 75, 205, 277, 398, 482
SfaNI GCATC 2 cut(s) 87, 309
SfoI GGCGCC 1 cut(s) 16
Sse9I AATT 3 cut(s) 172, 279, 308
SsiI CCGC 3 cut(s) 54, 206, 251
SspDI GGCGCC 1 cut(s) 14
SspMI CTAG 2 cut(s) 375, 526
StyD4I CCNGG 2 cut(s) 166, 471
StyI CCWWGG 2 cut(s) 73, 550
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 1 cut(s) 284
TasI AATT 3 cut(s) 172, 279, 308
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 3 cut(s) 73, 115, 506
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 400, 406
TspRI CASTG 3 cut(s) 73, 115, 506
XapI RAATTY 2 cut(s) 279, 308
XceI RCATGY 1 cut(s) 348
XspI CTAG 2 cut(s) 375, 526
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.