RLG00000015375

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000187
Physical Location & Seq
Reverse (-)
65237114 .. 65238867
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015375

Sequence Viewer

Length: 360 bp
ATGCAGGGGAATGTAGGGGCATCATCTTCTGGCACCGCAAGCACTGGCGGGGCTCTTACTGGTATGAGAGCTAGGGTTTCTTCCCCGTGCCCATCTTTGGTGTTTCGGGCCCCAATGCCTGGACCAGGCCGCGAGCCCTCTTTGAGTGCCTTGTTTTCGAAGCAAAAGAGACAGGACGAGCTCTTTGACGAGGTCTTGGGTGAGGATGGTTTGGGCAATGGCCATGCCGATGTTACTAGCGCCGATGACGGAGTCTGGCGGTTGGATGAGGAGGGCGGTGGGGCGCCTTGGATGAGTATGCACCACACAGACACACATATGATTGTCTCATTGCTCTTGATTCCTTCTTCATTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.44

Weight (kDa)

4.95

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 283
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 1 cut(s) 132
AciI CCGC 5 cut(s) 36, 48, 130, 259, 276
AcoI YGGCCR 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 97, 119, 125
AjnI CCWGG 2 cut(s) 118, 124
AluBI AGCT 2 cut(s) 71, 181
AluI AGCT 2 cut(s) 71, 181
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 163, 331
AoxI GGCC 3 cut(s) 108, 127, 220
ApaI GGGCCC 1 cut(s) 112
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AspLEI GCGC 2 cut(s) 242, 286
AspS9I GGNCC 3 cut(s) 108, 109, 122
AsuHPI GGTGA 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 2 cut(s) 92, 112
BalI TGGCCA 1 cut(s) 222
BanI GGYRCC 2 cut(s) 32, 283
BanII GRGCYC 4 cut(s) 55, 112, 138, 183
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 2 cut(s) 100, 200
BciT130I CCWGG 2 cut(s) 120, 126
BcoDI GTCTC 2 cut(s) 163, 331
BfaI CTAG 2 cut(s) 72, 237
BfoI RGCGCY 2 cut(s) 243, 287
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 120, 126
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 3 cut(s) 108, 109, 122
BmiI GGNNCC 4 cut(s) 34, 110, 111, 285
BmrFI CCNGG 2 cut(s) 120, 126
BmsI GCATC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 119, 125
Bse1I ACTGG 2 cut(s) 49, 64
Bse3DI GCAATG 2 cut(s) 223, 329
BseBI CCWGG 2 cut(s) 120, 126
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 3 cut(s) 211, 271, 297
BseLI CCNNNNNNNGG 3 cut(s) 97, 119, 125
BseMI GCAATG 2 cut(s) 223, 329
BseNI ACTGG 2 cut(s) 49, 64
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 2 cut(s) 92, 112
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 110, 129, 222
BshNI GGYRCC 2 cut(s) 32, 283
BsiHKAI GWGCWC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 97, 119, 125
BsmAI GTCTC 2 cut(s) 163, 331
BsnI GGCC 3 cut(s) 110, 129, 222
Bsp119I TTCGAA 1 cut(s) 158
Bsp120I GGGCCC 1 cut(s) 108
Bsp1286I GDGCHC 5 cut(s) 55, 92, 112, 138, 183
BspACI CCGC 5 cut(s) 36, 48, 130, 259, 276
BspANI GGCC 3 cut(s) 110, 129, 222
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 4 cut(s) 34, 110, 111, 285
BspT104I TTCGAA 1 cut(s) 158
BspT107I GGYRCC 2 cut(s) 32, 283
BsrDI GCAATG 2 cut(s) 223, 329
BsrI ACTGG 2 cut(s) 49, 64
BssECI CCNNGG 1 cut(s) 287
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 120, 126
BstACI GRCGYC 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 40, 134
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 211, 271, 297
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 2 cut(s) 243, 287
BstHHI GCGC 2 cut(s) 242, 286
BstMAI GTCTC 2 cut(s) 163, 331
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 2 cut(s) 120, 126
BstSCI CCNGG 2 cut(s) 118, 124
BstSLI GKGCMC 2 cut(s) 92, 112
BstUI CGCG 1 cut(s) 132
BsuRI GGCC 3 cut(s) 110, 129, 222
BtsCI GGATG 3 cut(s) 211, 271, 297
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 40, 134
CfoI GCGC 2 cut(s) 242, 286
Cfr13I GGNCC 3 cut(s) 108, 109, 122
CviAII CATG 1 cut(s) 224
CviJI RGCY 7 cut(s) 53, 71, 110, 129, 136, 181, 222
CviKI_1 RGCY 7 cut(s) 53, 71, 110, 129, 136, 181, 222
DinI GGCGCC 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 220
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 4 cut(s) 55, 112, 138, 183
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 118, 124
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 4 cut(s) 55, 112, 138, 183
EgeI GGCGCC 1 cut(s) 285
EheI GGCGCC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 65, 225, 299, 318, 320
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 41
FauNDI CATATG 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 3 cut(s) 218, 278, 304
FriOI GRGCYC 4 cut(s) 55, 112, 138, 183
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 2 cut(s) 72, 237
GlaI GCGC 2 cut(s) 241, 285
GluI GCNGC 1 cut(s) 130
HaeII RGCGCY 2 cut(s) 243, 287
HaeIII GGCC 3 cut(s) 110, 129, 222
HhaI GCGC 2 cut(s) 242, 286
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 2 cut(s) 240, 284
HinP1I GCGC 2 cut(s) 240, 284
HinfI GANTC 2 cut(s) 252, 340
HphI GGTGA 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 354
HpyCH4V TGCA 2 cut(s) 4, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 2 cut(s) 240, 284
KasI GGCGCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 15, 30, 45, 105, 111, 132, 138, 158, 241
LweI GCATC 1 cut(s) 29
MaeI CTAG 2 cut(s) 72, 237
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 3 cut(s) 18, 72, 339
MhlI GDGCHC 5 cut(s) 55, 92, 112, 138, 183
MlsI TGGCCA 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 222
Mly113I GGCGCC 1 cut(s) 284
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 5 cut(s) 148, 184, 196, 262, 265
Mox20I TGGCCA 1 cut(s) 222
MscI TGGCCA 1 cut(s) 222
MseI TTAA 1 cut(s) 358
MslI CAYNNNNRTG 2 cut(s) 228, 317
Msp20I TGGCCA 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 120, 126
MvaI CCWGG 2 cut(s) 120, 126
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 39
NarI GGCGCC 1 cut(s) 284
NdeI CATATG 1 cut(s) 318
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 4 cut(s) 34, 110, 111, 285
NspV TTCGAA 1 cut(s) 158
PfeI GAWTC 1 cut(s) 340
PflFI GACNNNGTC 2 cut(s) 191, 251
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 260
PluTI GGCGCC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 118, 124
PspGI CCWGG 2 cut(s) 118, 124
PspN4I GGNNCC 4 cut(s) 34, 110, 111, 285
PspOMI GGGCCC 1 cut(s) 108
PspPI GGNCC 3 cut(s) 108, 109, 122
PsyI GACNNNGTC 2 cut(s) 191, 251
RseI CAYNNNNRTG 2 cut(s) 228, 317
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 1 cut(s) 130
Sau96I GGNCC 3 cut(s) 108, 109, 122
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 2 cut(s) 120, 126
SduI GDGCHC 5 cut(s) 55, 92, 112, 138, 183
SetI ASST 3 cut(s) 73, 183, 195
SfaNI GCATC 1 cut(s) 29
SfoI GGCGCC 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 158
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 228, 317
SsiI CCGC 5 cut(s) 36, 48, 130, 259, 276
SspDI GGCGCC 1 cut(s) 283
SspMI CTAG 2 cut(s) 72, 237
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 118, 124
StyI CCWWGG 1 cut(s) 287
TaqI TCGA 1 cut(s) 158
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 2 cut(s) 191, 251
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 123
XspI CTAG 2 cut(s) 72, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.