Rroxscaffold_6G00406010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000187
Physical Location & Seq
Forward (+)
28440344 .. 28466309
25966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406010.1

Sequence Viewer

Length: 282 bp
ATGGGGATACGTCTAGGAACCGAAGAAAAGATTAGAAGAAAGGCTAAGCGTGCGGCTCATGAATGTGCGGACAGAGAGGAAACCGATGTTGATAAGCTATCATCTACCGAAACTGAAAGAGCTAGCATGTCTTGCACGAACAAGACAGATGTGGTTTTCCGAACTGTACTTCCCAACCAACTACCGGAACGGTTGCTCCACAATCCGGCTGTGCTAATGAACCGACCTCGGCGTAAAACTAATATCCGAGAATTGATTGAGATGATAGCTATTACATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.69

Weight (kDa)

9.5

Isoelectric Point (pI)

68.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 68
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 184, 205
AloI GAACNNNNNNTCC 4 cut(s) 154, 180, 186, 212
AluBI AGCT 3 cut(s) 97, 122, 269
AluI AGCT 3 cut(s) 97, 122, 269
AsuNHI GCTAGC 1 cut(s) 122
BfaI CTAG 2 cut(s) 14, 123
BisI GCNGC 1 cut(s) 54
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 19
BmtI GCTAGC 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 227
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 205
BseDI CCNNGG 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 184, 205
BsiSI CCGG 2 cut(s) 185, 206
BslI CCNNNNNNNGG 2 cut(s) 184, 205
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 2 cut(s) 53, 68
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 19
BspOI GCTAGC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 166, 192
BstAPI GCANNNNNTGC 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 51, 124
BstDEI CTNAG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 50, 132
BstNSI RCATGY 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 51, 124
CciI TCATGA 1 cut(s) 58
Csp6I GTAC 1 cut(s) 167
CviAII CATG 2 cut(s) 59, 127
CviJI RGCY 6 cut(s) 44, 56, 97, 122, 209, 269
CviKI_1 RGCY 6 cut(s) 44, 56, 97, 122, 209, 269
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 45
FaeI CATG 2 cut(s) 62, 130
FaiI YATR 2 cut(s) 60, 128
FatI CATG 2 cut(s) 58, 126
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 14, 123
GluI GCNGC 1 cut(s) 54
HapII CCGG 2 cut(s) 185, 206
Hin1II CATG 2 cut(s) 62, 130
HpaII CCGG 2 cut(s) 185, 206
Hpy188I TCNGA 2 cut(s) 161, 248
Hpy188III TCNNGA 2 cut(s) 59, 279
HpyCH4III ACNGT 2 cut(s) 166, 192
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 132
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 62, 130
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 2 cut(s) 198, 219
MaeI CTAG 2 cut(s) 14, 123
MaeII ACGT 1 cut(s) 10
MboII GAAGA 2 cut(s) 35, 48
MluCI AATT 1 cut(s) 251
MnlI CCTC 2 cut(s) 70, 237
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 2 cut(s) 185, 206
MwoI GCNNNNNNNGC 2 cut(s) 50, 132
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 2 cut(s) 62, 130
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 208
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 58
PkrI GCNGC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 19
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 63
SatI GCNGC 1 cut(s) 54
SetI ASST 5 cut(s) 13, 99, 124, 229, 271
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 1 cut(s) 251
SsiI CCGC 2 cut(s) 53, 68
SspMI CTAG 2 cut(s) 14, 123
TaaI ACNGT 2 cut(s) 166, 192
TaiI ACGT 1 cut(s) 13
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 166
TauI GCSGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 75, 233
XceI RCATGY 1 cut(s) 130
XspI CTAG 2 cut(s) 14, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.