Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037158.1

Orthogroup ID

OG0000187

Physical Location & Seq

Genomic Coordinates Reverse (-)

209 .. 592

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037158.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgactactgttgatgccatggctgctcgactggcctcttctttggccattgctgaggggagaaagcaggttgatttacgaccaacgcaggggaagggtctgtggcaggcagacatgtttttggtaggaaagttgctcaccgctcgagaatataagactcgatcctttatagggatgtttcgaaatgcatggagggtacacagatctttgcgtgtggaggaagcggagggacatagggttctcttcactttgtatgatgctacagatcgggatcagatctggaagggaggtccatggggttataatcacgctccaattgccctagcttactacgatggcgtgactgacattgaatcggtctccttcaccaagtcttcgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

127

Amino Acids

14.4

Weight (kDa)

9.3

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20170 FvH4_4g06831
rosa_chinensis	RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata	RLG00000015375 RLG00000018377
rosa_multiflora	Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii	Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa	Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	2 cut(s)	141, 224
AclWI	GGATC	2 cut(s)	156, 279
AcoI	YGGCCR	1 cut(s)	45
AfaI	GTAC	2 cut(s)	198, 380
AfiI	CCNNNNNNNGG	2 cut(s)	89, 171
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	353
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	156, 279
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	2 cut(s)	33, 45
ApeKI	GCWGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	130, 358
AsuII	TTCGAA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	2 cut(s)	323, 382
BfmI	CTRYAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	58
BglII	AGATCT	2 cut(s)	203, 276
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	290
BmsI	GCATC	2 cut(s)	4, 247
BpiI	GAAGAC	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	18, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 171
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	18, 293
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	89, 171
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	2 cut(s)	35, 47
BsiHKCI	CYCGRG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	89, 171
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	35, 47
Bso31I	GGTCTC	1 cut(s)	364
BsoBI	CYCGRG	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	161, 203, 265, 271, 276
Bsp19I	CCATGG	2 cut(s)	18, 293
BspACI	CCGC	2 cut(s)	141, 224
BspANI	GGCC	2 cut(s)	35, 47
BspCNI	CTCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	156, 279
BspT104I	TTCGAA	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	18, 293
BssMI	GATC	5 cut(s)	161, 203, 265, 271, 276
BssT1I	CCWWGG	2 cut(s)	18, 293
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	43, 248
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	2 cut(s)	18, 293
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	5 cut(s)	164, 206, 268, 274, 279
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	5 cut(s)	161, 203, 265, 271, 276
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 317
BstNSI	RCATGY	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	2 cut(s)	203, 276
BstYI	RGATCY	2 cut(s)	203, 276
BsuRI	GGCC	2 cut(s)	35, 47
BtgI	CCRYGG	2 cut(s)	18, 293
BtsCI	GGATG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	197, 379
CviAII	CATG	4 cut(s)	19, 115, 189, 294
CviJI	RGCY	4 cut(s)	23, 35, 47, 326
CviKI_1	RGCY	4 cut(s)	23, 35, 47, 326
CviQI	GTAC	2 cut(s)	197, 379
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	5 cut(s)	163, 205, 267, 273, 278
DpnII	GATC	5 cut(s)	161, 203, 265, 271, 276
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	43, 248
EarI	CTCTTC	2 cut(s)	43, 248
Eco130I	CCWWGG	2 cut(s)	18, 293
Eco31I	GGTCTC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	18, 293
EcoT22I	ATGCAT	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	18, 293
FaeI	CATG	4 cut(s)	22, 118, 192, 297
FaiI	YATR	9 cut(s)	20, 116, 153, 170, 190, 234, 255, 295, 303
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	18, 114, 188, 293
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	323, 382
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	35, 47
Hin1II	CATG	4 cut(s)	22, 118, 192, 297
HinfI	GANTC	2 cut(s)	157, 353
HphI	GGTGA	2 cut(s)	130, 358
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	146, 269, 280
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	88, 277, 373
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 317
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	22, 118, 192, 297
Kzo9I	GATC	5 cut(s)	161, 203, 265, 271, 276
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	5 cut(s)	17, 53, 74, 92, 265
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	2 cut(s)	4, 247
MaeI	CTAG	2 cut(s)	323, 382
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	5 cut(s)	163, 205, 267, 273, 278
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	5 cut(s)	161, 203, 265, 271, 276
MboII	GAAGA	3 cut(s)	30, 235, 366
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	2 cut(s)	203, 276
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	1 cut(s)	315
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	46, 49, 186, 211, 220, 281
Mox20I	TGGCCA	1 cut(s)	47
Mph1103I	ATGCAT	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	47
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 317
NcoI	CCATGG	2 cut(s)	18, 293
NdeII	GATC	5 cut(s)	161, 203, 265, 271, 276
NlaIII	CATG	4 cut(s)	22, 118, 192, 297
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	144
PciI	ACATGT	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PscI	ACATGT	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	203, 276
RsaI	GTAC	2 cut(s)	198, 380
RsaNI	GTAC	2 cut(s)	197, 379
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	161, 203, 265, 271, 276
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	151
SetI	ASST	3 cut(s)	72, 292, 328
SfaNI	GCATC	2 cut(s)	4, 247
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	141, 224
SspMI	CTAG	2 cut(s)	323, 382
StyI	CCWWGG	2 cut(s)	18, 293
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	28, 145, 160, 181
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	353
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	290
XceI	RCATGY	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	144
XspI	CTAG	2 cut(s)	323, 382
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.