Rmu_sc0002583.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002583.1
OG0000187
Physical Location & Seq
Reverse (-)
14406 .. 15056
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002583.1_g000002.1.cds

Sequence Viewer

Length: 651 bp
atgagttccgttgatgctatggctgctcgactcacttcttctctcgctctggtagaggggaagaagaaggtagatctccgtctgtcgcaaggcaagggattgcaacaatctaaaatttttatggttgggaaacccctcattgccaaggagttcaaggtccgctccttccttggtatgtttcgatctgcagggagggtcaatcggacgttgcaagttgaagagactgaaggaggtagggttttgtttactttttcggatcctgcagactgggctagggtttggaggagtgcgccaagggggtttaaccgtgctcctgtcgcttgggctgaatatgatggggttattctgattgagaaggtattgccggtgaagtcatcttattggatcacgttgcaaggtattccacctgctttcagatccgaaagggtgatgacgatgattgggtataccttgggggattttcaggagattgataagcagggaaagaaggttggtaagtatcatatccaggttgagattcctttgattcagccaatatcttttcagcgatggtattgggtggaggatacggtcaagttaagttgtttggaaggtgtggggtgtgtggcttggtcacacacattggcttgccgtgctcggggatggcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

216

Amino Acids

24.44

Weight (kDa)

9.85

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 415
Acc36I ACCTGC 1 cut(s) 415
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 446
AciI CCGC 1 cut(s) 160
AclWI GGATC 4 cut(s) 251, 264, 392, 411
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 2 cut(s) 154, 218
AjnI CCWGG 1 cut(s) 507
Alw21I GWGCWC 2 cut(s) 313, 637
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 4 cut(s) 251, 264, 392, 411
Ama87I CYCGRG 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 114
AspLEI GCGC 2 cut(s) 292, 648
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 379, 439
AvaI CYCGRG 1 cut(s) 636
AvaII GGWCC 1 cut(s) 157
BamHI GGATCC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 313, 637
BbvI GCAGC 1 cut(s) 10
BccI CCATC 3 cut(s) 329, 543, 636
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 2 cut(s) 186, 261
BfoI RGCGCY 1 cut(s) 649
BfuAI ACCTGC 1 cut(s) 415
BfuI GTATCC 1 cut(s) 559
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 509
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 277
BsaJI CCNNGG 4 cut(s) 144, 169, 293, 450
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 4 cut(s) 144, 169, 293, 450
BseGI GGATG 1 cut(s) 647
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 313, 637
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 636
Bsp1286I GDGCHC 2 cut(s) 313, 637
Bsp143I GATC 5 cut(s) 73, 182, 256, 384, 416
BspACI CCGC 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 2 cut(s) 190, 265
BspMI ACCTGC 1 cut(s) 415
BspPI GGATC 4 cut(s) 251, 264, 392, 411
BsrBI CCGCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 4 cut(s) 144, 169, 293, 450
BssMI GATC 5 cut(s) 73, 182, 256, 384, 416
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 4 cut(s) 144, 169, 293, 450
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 308, 571
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 628
BstF5I GGATG 1 cut(s) 647
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 2 cut(s) 292, 648
BstKTI GATC 5 cut(s) 76, 185, 259, 387, 419
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 5 cut(s) 73, 182, 256, 384, 416
BstMWI GCNNNNNNNGC 4 cut(s) 23, 269, 317, 632
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 2 cut(s) 186, 261
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 3 cut(s) 73, 256, 416
BstYI RGATCY 3 cut(s) 73, 256, 416
BstZ17I GTATAC 1 cut(s) 447
BsuI GTATCC 1 cut(s) 559
BtgZI GCGATG 1 cut(s) 562
BtsCI GGATG 1 cut(s) 647
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 628
CfoI GCGC 2 cut(s) 292, 648
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 157
CviJI RGCY 6 cut(s) 23, 272, 326, 532, 608, 626
CviKI_1 RGCY 6 cut(s) 23, 272, 326, 532, 608, 626
DpnI GATC 5 cut(s) 75, 184, 258, 386, 418
DpnII GATC 5 cut(s) 73, 182, 256, 384, 416
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 4 cut(s) 144, 169, 293, 450
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 636
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 4 cut(s) 144, 169, 293, 450
ErhI CCWWGG 4 cut(s) 144, 169, 293, 450
FaiI YATR 6 cut(s) 20, 122, 176, 333, 447, 504
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 273
GlaI GCGC 2 cut(s) 291, 647
GluI GCNGC 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 649
HapII CCGG 1 cut(s) 365
HhaI GCGC 2 cut(s) 292, 648
Hin6I GCGC 2 cut(s) 290, 646
HinP1I GCGC 2 cut(s) 290, 646
HinfI GANTC 3 cut(s) 30, 517, 526
HpaII CCGG 1 cut(s) 365
HphI GGTGA 2 cut(s) 379, 439
Hpy166II GTNNAC 2 cut(s) 246, 447
Hpy188I TCNGA 5 cut(s) 204, 256, 348, 416, 421
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 2 cut(s) 246, 447
HpyAV CCTTC 6 cut(s) 61, 175, 221, 349, 481, 584
HpyCH4III ACNGT 2 cut(s) 308, 571
HpyCH4IV ACGT 2 cut(s) 206, 389
HpyCH4V TGCA 5 cut(s) 103, 188, 211, 263, 394
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 269, 317, 632
HpySE526I ACGT 2 cut(s) 206, 389
HspAI GCGC 2 cut(s) 290, 646
Kzo9I GATC 5 cut(s) 73, 182, 256, 384, 416
LmnI GCTCC 2 cut(s) 167, 316
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 273
MaeII ACGT 2 cut(s) 206, 389
MaeIII GTNAC 1 cut(s) 612
MalI GATC 5 cut(s) 75, 184, 258, 386, 418
MbiI CCGCTC 1 cut(s) 162
MboI GATC 5 cut(s) 73, 182, 256, 384, 416
MboII GAAGA 4 cut(s) 30, 73, 76, 230
MflI RGATCY 3 cut(s) 73, 256, 416
MhlI GDGCHC 2 cut(s) 313, 637
MluCI AATT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 6 cut(s) 49, 146, 186, 224, 276, 556
MseI TTAA 2 cut(s) 303, 578
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 4 cut(s) 23, 269, 317, 632
NdeII GATC 5 cut(s) 73, 182, 256, 384, 416
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 612
PaqCI CACCTGC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 517, 526
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 2 cut(s) 190, 265
PsuI RGATCY 3 cut(s) 73, 256, 416
SaqAI TTAA 2 cut(s) 303, 578
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 5 cut(s) 73, 182, 256, 384, 416
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 313, 637
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 2 cut(s) 186, 261
SinI GGWCC 1 cut(s) 157
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 4 cut(s) 144, 169, 293, 450
TaaI ACNGT 2 cut(s) 308, 571
TaiI ACGT 2 cut(s) 209, 392
TaqI TCGA 2 cut(s) 28, 181
TasI AATT 1 cut(s) 114
TfiI GAWTC 2 cut(s) 517, 526
Tru1I TTAA 2 cut(s) 303, 578
Tru9I TTAA 2 cut(s) 303, 578
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 612
TspGWI ACGGA 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.