Rmu_sc0000620.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000620.1
OG0000187
Physical Location & Seq
Forward (+)
7466 .. 9403
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000620.1_g000003.1.cds

Sequence Viewer

Length: 1203 bp
atggaacattgcaagcggaggaagcgggggagcaaagggtgctcttcacgttgtcagacccggctgatcggtgcgccatgggggtataaccatgctccagtggcgttggtgtggtatgacggcatcatgccgattgaaaaagtccccttgaccatgacgtcgtattggattactctccaggatatcccgccggcattccggtctgaaagagtcatgattatgattggatacaccttgggggattttcaagagatcgacaagaatgccaagaaggccgggaagctttggattagggttgaaatcccattgaaaaaactgttgcctttgaagcgaaggtatctagtggaggatgaaattgaatttcgatgcaagttccggtatgacaagctttttgggcggtgttcaaattatggccttgtaaaccatgttggactgccgtgctcagggccggcgttggatgaggatgatgacgatgttgagcggaccattctggggtcccagagtttggctaaagaggcgactggtggtgatatgccaatgcaggggacagcgggtgcgtcaccttctggcacagcgagcagcagcagggttattactggtatgagggctagggttcctaccccatgcctgttgttggtatttcagactccagtccctggtctggttggtgagccctcgttgggcaccttgtttccgaagcaaaagcggcaagtggtggtgtgtgacctccaagaaatagccgaaactccagagagcctcactggcaaacgtcgaggtcgtgaagatggcttgaccatatcccctaagaagttgaaattgagtttggctgtgggtaagagaaacctcattctagattctgaaaaccttggactggacctaaatttgcaggtagagtccacctctggaagcatgaagagaaagacaggacgccctattggcagtaagaatagacccgacccggacccctcgccattttccggtgacgtacgacggcgaagccggcccagatcgacttgcccagccctcctctatcgacccttggcatcagtttcaccgatacagcaacccagaacgagatcggtagaagtgaacagtggtggtggaccaacccggtcagattttcaattttccggagactccttggctgatccttccaggttttggaatctcctcctcctcttgatcatcccaatacctgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

400

Amino Acids

44.18

Weight (kDa)

9.63

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 157
AatII GACGTC 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 683
AccB7I CCANNNNNTGG 3 cut(s) 505, 656, 1161
AccBSI CCGCTC 1 cut(s) 481
AccIII TCCGGA 1 cut(s) 1130
AciI CCGC 7 cut(s) 16, 25, 188, 397, 481, 551, 706
AclWI GGATC 1 cut(s) 1142
AcsI RAATTY 2 cut(s) 359, 880
AcyI GRCGYC 2 cut(s) 158, 928
AfaI GTAC 1 cut(s) 987
AgsI TTSAA 9 cut(s) 137, 248, 299, 310, 328, 359, 405, 814, 1124
AjnI CCWGG 3 cut(s) 177, 655, 1154
AjuI GAANNNNNNNTTGG 2 cut(s) 806, 838
AluBI AGCT 2 cut(s) 283, 388
AluI AGCT 2 cut(s) 283, 388
Alw21I GWGCWC 2 cut(s) 44, 443
Alw26I GTCTC 1 cut(s) 1128
AlwI GGATC 1 cut(s) 1142
AlwNI CAGNNNCTG 1 cut(s) 656
Aor13HI TCCGGA 1 cut(s) 1130
AoxI GGCC 4 cut(s) 273, 412, 446, 1001
ApeKI GCWGC 2 cut(s) 579, 582
ApoI RAATTY 2 cut(s) 359, 880
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 7 cut(s) 446, 483, 495, 874, 961, 1002, 1103
AsuC2I CCSGG 4 cut(s) 61, 277, 959, 1111
AsuHPI GGTGA 5 cut(s) 539, 552, 680, 992, 1044
AvaII GGWCC 5 cut(s) 483, 495, 874, 961, 1103
BaeGI GKGCMC 1 cut(s) 686
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 675
Bbv12I GWGCWC 2 cut(s) 44, 443
BbvI GCAGC 2 cut(s) 591, 594
BccI CCATC 1 cut(s) 779
BceAI ACGGC 3 cut(s) 136, 421, 1007
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 3 cut(s) 179, 657, 1156
BciVI GTATCC 1 cut(s) 221
BclI TGATCA 1 cut(s) 1182
BcnI CCSGG 4 cut(s) 61, 277, 959, 1111
BcoDI GTCTC 1 cut(s) 1128
BfaI CTAG 4 cut(s) 341, 609, 851, 1201
BfuAI ACCTGC 1 cut(s) 877
BfuI GTATCC 1 cut(s) 221
BglI GCCNNNNNGGC 3 cut(s) 272, 762, 936
BisI GCNGC 3 cut(s) 580, 583, 707
BlsI GCNGC 3 cut(s) 581, 584, 708
Bme1390I CCNGG 7 cut(s) 61, 179, 277, 657, 959, 1111, 1156
Bme18I GGWCC 5 cut(s) 483, 495, 874, 961, 1103
BmgT120I GGNCC 7 cut(s) 446, 483, 495, 874, 961, 1002, 1103
BmiI GGNNCC 5 cut(s) 496, 497, 615, 685, 963
BmrFI CCNGG 7 cut(s) 61, 179, 277, 657, 959, 1111, 1156
BmsI GCATC 3 cut(s) 132, 356, 1052
BoxI GACNNNNGTC 1 cut(s) 650
BplI GAGNNNNNCTC 2 cut(s) 884, 916
BpmI CTGGAG 4 cut(s) 81, 161, 633, 732
Bpu10I CCTNAGC 1 cut(s) 442
BpuMI CCSGG 4 cut(s) 61, 277, 959, 1111
BsaHI GRCGYC 2 cut(s) 158, 928
BsaJI CCNNGG 6 cut(s) 77, 234, 655, 865, 1038, 1140
BsaWI WCCGGW 4 cut(s) 198, 375, 977, 1130
Bse118I RCCGGY 3 cut(s) 190, 448, 999
Bse1I ACTGG 6 cut(s) 98, 526, 601, 650, 766, 876
Bse3DI GCAATG 1 cut(s) 7
BseAI TCCGGA 1 cut(s) 1130
BseBI CCWGG 3 cut(s) 179, 657, 1156
BseDI CCNNGG 6 cut(s) 77, 234, 655, 865, 1038, 1140
BseGI GGATG 4 cut(s) 355, 463, 469, 1185
BseMI GCAATG 1 cut(s) 7
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 6 cut(s) 98, 526, 601, 650, 766, 876
BseRI GAGGAG 4 cut(s) 1016, 1160, 1163, 1166
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 2 cut(s) 591, 594
BseYI CCCAGC 1 cut(s) 1018
BshFI GGCC 4 cut(s) 275, 414, 448, 1003
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 44, 443
BsiWI CGTACG 1 cut(s) 985
BslFI GGGAC 4 cut(s) 128, 481, 559, 638
BsmAI GTCTC 1 cut(s) 1128
BsmFI GGGAC 4 cut(s) 128, 481, 559, 638
BsmI GAATGC 2 cut(s) 194, 268
BsnI GGCC 4 cut(s) 275, 414, 448, 1003
Bsp1286I GDGCHC 4 cut(s) 44, 443, 675, 686
Bsp13I TCCGGA 1 cut(s) 1130
Bsp143I GATC 6 cut(s) 66, 252, 1007, 1076, 1147, 1182
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 7 cut(s) 16, 25, 188, 397, 481, 551, 706
BspANI GGCC 4 cut(s) 275, 414, 448, 1003
BspCNI CTCAG 1 cut(s) 455
BspEI TCCGGA 1 cut(s) 1130
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 5 cut(s) 496, 497, 615, 685, 963
BspMI ACCTGC 1 cut(s) 877
BspPI GGATC 1 cut(s) 1142
BspQI GCTCTTC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 7
BsrFI RCCGGY 3 cut(s) 190, 448, 999
BsrI ACTGG 6 cut(s) 98, 526, 601, 650, 766, 876
BssAI RCCGGY 3 cut(s) 190, 448, 999
BssECI CCNNGG 6 cut(s) 77, 234, 655, 865, 1038, 1140
BssMI GATC 6 cut(s) 66, 252, 1007, 1076, 1147, 1182
BssNI GRCGYC 2 cut(s) 158, 928
BssT1I CCWWGG 5 cut(s) 77, 234, 865, 1038, 1140
Bst2UI CCWGG 3 cut(s) 179, 657, 1156
Bst4CI ACNGT 2 cut(s) 318, 1094
Bst6I CTCTTC 2 cut(s) 49, 908
BstACI GRCGYC 2 cut(s) 158, 928
BstAPI GCANNNNNTGC 1 cut(s) 39
BstC8I GCNNGC 5 cut(s) 14, 192, 450, 577, 1001
BstDEI CTNAG 2 cut(s) 442, 804
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 4 cut(s) 355, 463, 469, 1185
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 6 cut(s) 69, 255, 1010, 1079, 1150, 1185
BstMAI GTCTC 1 cut(s) 1128
BstMBI GATC 6 cut(s) 66, 252, 1007, 1076, 1147, 1182
BstNI CCWGG 3 cut(s) 179, 657, 1156
BstPAI GACNNNNGTC 1 cut(s) 650
BstSCI CCNGG 7 cut(s) 59, 177, 275, 655, 957, 1109, 1154
BstSLI GKGCMC 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 591, 594
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 4 cut(s) 275, 414, 448, 1003
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 4 cut(s) 355, 463, 469, 1185
BtsIMutI CAGTG 3 cut(s) 105, 759, 1099
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 5 cut(s) 14, 192, 450, 577, 1001
CaiI CAGNNNCTG 1 cut(s) 656
CciI TCATGA 1 cut(s) 213
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 3 cut(s) 190, 448, 999
Cfr13I GGNCC 7 cut(s) 446, 483, 495, 874, 961, 1002, 1103
CseI GACGC 2 cut(s) 546, 936
Csp6I GTAC 1 cut(s) 986
CviAII CATG 8 cut(s) 78, 92, 127, 154, 214, 425, 624, 910
CviQI GTAC 1 cut(s) 986
DdeI CTNAG 2 cut(s) 442, 804
DpnI GATC 6 cut(s) 68, 254, 1009, 1078, 1149, 1184
DpnII GATC 6 cut(s) 66, 252, 1007, 1076, 1147, 1182
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 49, 908
EarI CTCTTC 2 cut(s) 49, 908
Eco130I CCWWGG 5 cut(s) 77, 234, 865, 1038, 1140
Eco24I GRGCYC 1 cut(s) 675
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 5 cut(s) 483, 495, 874, 961, 1103
EcoO109I RGGNCCY 1 cut(s) 495
EcoRII CCWGG 3 cut(s) 177, 655, 1154
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 5 cut(s) 77, 234, 865, 1038, 1140
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 5 cut(s) 77, 234, 865, 1038, 1140
FaeI CATG 8 cut(s) 81, 95, 130, 157, 217, 428, 627, 913
FaqI GGGAC 4 cut(s) 128, 481, 559, 638
FatI CATG 8 cut(s) 77, 91, 126, 153, 213, 424, 623, 909
FauI CCCGC 3 cut(s) 18, 195, 544
FbaI TGATCA 1 cut(s) 1182
Fnu4HI GCNGC 3 cut(s) 580, 583, 707
FokI GGATG 4 cut(s) 362, 470, 476, 1172
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 3 cut(s) 580, 583, 707
FspBI CTAG 4 cut(s) 341, 609, 851, 1201
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 580, 583, 707
GsaI CCCAGC 1 cut(s) 1022
GsuI CTGGAG 4 cut(s) 81, 161, 633, 732
HaeIII GGCC 4 cut(s) 275, 414, 448, 1003
HgaI GACGC 2 cut(s) 546, 936
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 2 cut(s) 158, 928
Hin1II CATG 8 cut(s) 81, 95, 130, 157, 217, 428, 627, 913
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 2 cut(s) 281, 386
HinfI GANTC 6 cut(s) 210, 646, 854, 893, 1136, 1165
HphI GGTGA 5 cut(s) 539, 552, 680, 992, 1044
Hpy166II GTNNAC 4 cut(s) 421, 897, 1090, 1103
Hpy188I TCNGA 6 cut(s) 57, 205, 645, 696, 859, 1117
Hpy188III TCNNGA 8 cut(s) 214, 248, 749, 779, 851, 903, 1131, 1180
Hpy8I GTNNAC 4 cut(s) 421, 897, 1090, 1103
Hpy99I CGWCG 3 cut(s) 163, 774, 993
HpyAV CCTTC 4 cut(s) 265, 327, 573, 1161
HpyCH4III ACNGT 2 cut(s) 318, 1094
HpyCH4IV ACGT 4 cut(s) 49, 158, 769, 984
HpyCH4V TGCA 4 cut(s) 12, 369, 541, 886
HpyF3I CTNAG 2 cut(s) 442, 804
HpySE526I ACGT 4 cut(s) 49, 158, 769, 984
Hsp92I GRCGYC 2 cut(s) 158, 928
Hsp92II CATG 8 cut(s) 81, 95, 130, 157, 217, 428, 627, 913
HspAI GCGC 1 cut(s) 74
KflI GGGWCCC 1 cut(s) 495
Kpn2I TCCGGA 1 cut(s) 1130
KroI GCCGGC 3 cut(s) 190, 448, 999
KroNI GCCGGC 3 cut(s) 192, 450, 1001
Ksp22I TGATCA 1 cut(s) 1182
Kzo9I GATC 6 cut(s) 66, 252, 1007, 1076, 1147, 1182
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 30, 100
Lsp1109I GCAGC 2 cut(s) 591, 594
LweI GCATC 3 cut(s) 132, 356, 1052
MaeI CTAG 4 cut(s) 341, 609, 851, 1201
MaeII ACGT 4 cut(s) 49, 158, 769, 984
MaeIII GTNAC 3 cut(s) 558, 722, 980
MalI GATC 6 cut(s) 68, 254, 1009, 1078, 1149, 1184
MbiI CCGCTC 1 cut(s) 481
MboI GATC 6 cut(s) 66, 252, 1007, 1076, 1147, 1182
MboII GAAGA 3 cut(s) 36, 794, 925
MhlI GDGCHC 4 cut(s) 44, 443, 675, 686
MluCI AATT 6 cut(s) 354, 359, 406, 815, 880, 1124
MlyI GAGTC 4 cut(s) 219, 640, 902, 1130
MmeI TCCRAC 2 cut(s) 409, 435
MroI TCCGGA 1 cut(s) 1130
MroNI GCCGGC 3 cut(s) 190, 448, 999
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 551
MspR9I CCNGG 7 cut(s) 61, 179, 277, 657, 959, 1111, 1156
Mva1269I GAATGC 2 cut(s) 194, 268
MvaI CCWGG 3 cut(s) 179, 657, 1156
NaeI GCCGGC 3 cut(s) 192, 450, 1001
NciI CCSGG 4 cut(s) 61, 277, 959, 1111
NcoI CCATGG 1 cut(s) 77
NdeII GATC 6 cut(s) 66, 252, 1007, 1076, 1147, 1182
NgoMIV GCCGGC 3 cut(s) 190, 448, 999
NlaIII CATG 8 cut(s) 81, 95, 130, 157, 217, 428, 627, 913
NlaIV GGNNCC 5 cut(s) 496, 497, 615, 685, 963
NmuCI GTSAC 3 cut(s) 558, 722, 980
PagI TCATGA 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 775
PctI GAATGC 2 cut(s) 194, 268
PdiI GCCGGC 3 cut(s) 192, 450, 1001
PfeI GAWTC 2 cut(s) 854, 1165
Pfl23II CGTACG 1 cut(s) 985
PflMI CCANNNNNTGG 3 cut(s) 505, 656, 1161
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 3 cut(s) 581, 584, 708
PleI GAGTC 4 cut(s) 218, 640, 901, 1130
PpsI GAGTC 4 cut(s) 218, 640, 901, 1130
PpuMI RGGWCCY 1 cut(s) 495
PshAI GACNNNNGTC 1 cut(s) 650
Psp5II RGGWCCY 1 cut(s) 495
Psp6I CCWGG 3 cut(s) 177, 655, 1154
PspFI CCCAGC 1 cut(s) 1018
PspGI CCWGG 3 cut(s) 177, 655, 1154
PspLI CGTACG 1 cut(s) 985
PspN4I GGNNCC 5 cut(s) 496, 497, 615, 685, 963
PspPI GGNCC 7 cut(s) 446, 483, 495, 874, 961, 1002, 1103
PspPPI RGGWCCY 1 cut(s) 495
PstNI CAGNNNCTG 1 cut(s) 656
RsaI GTAC 1 cut(s) 987
RsaNI GTAC 1 cut(s) 986
RseI CAYNNNNRTG 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 49
SatI GCNGC 3 cut(s) 580, 583, 707
Sau3AI GATC 6 cut(s) 66, 252, 1007, 1076, 1147, 1182
Sau96I GGNCC 7 cut(s) 446, 483, 495, 874, 961, 1002, 1103
SchI GAGTC 4 cut(s) 219, 640, 902, 1130
ScrFI CCNGG 7 cut(s) 61, 179, 277, 657, 959, 1111, 1156
SduI GDGCHC 4 cut(s) 44, 443, 675, 686
SfaNI GCATC 3 cut(s) 132, 356, 1052
SinI GGWCC 5 cut(s) 483, 495, 874, 961, 1103
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 6 cut(s) 354, 359, 406, 815, 880, 1124
SsiI CCGC 7 cut(s) 16, 25, 188, 397, 481, 551, 706
SspMI CTAG 4 cut(s) 341, 609, 851, 1201
StyD4I CCNGG 7 cut(s) 59, 177, 275, 655, 957, 1109, 1154
StyI CCWWGG 5 cut(s) 77, 234, 865, 1038, 1140
TaaI ACNGT 2 cut(s) 318, 1094
TaiI ACGT 4 cut(s) 52, 161, 772, 987
TaqI TCGA 5 cut(s) 255, 364, 772, 1010, 1033
TasI AATT 6 cut(s) 354, 359, 406, 815, 880, 1124
TauI GCSGC 1 cut(s) 709
TfiI GAWTC 2 cut(s) 854, 1165
TscAI CASTG 3 cut(s) 105, 766, 1099
TseFI GTSAC 3 cut(s) 558, 722, 980
TseI GCWGC 2 cut(s) 579, 582
Tsp45I GTSAC 3 cut(s) 558, 722, 980
TspDTI ATGAA 2 cut(s) 366, 926
TspRI CASTG 3 cut(s) 105, 766, 1099
Van91I CCANNNNNTGG 3 cut(s) 505, 656, 1161
VpaK11BI GGWCC 5 cut(s) 483, 495, 874, 961, 1103
XapI RAATTY 2 cut(s) 359, 880
XbaI TCTAGA 1 cut(s) 850
XspI CTAG 4 cut(s) 341, 609, 851, 1201
ZraI GACGTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.