Rmu_co8219154.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8219154.1
OG0000187
Physical Location & Seq
Reverse (-)
434 .. 737
304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8219154.1_g000003.1.cds

Sequence Viewer

Length: 304 bp
ggattttcaggagatcgacaagaattccaagaaggctgggaagcttcgggttagggctgagatcccattgaataagccattgccgtttaagcgatggtatctagtggaggacgaagttgagtttcggtgcaagttccggtatgacaagctgtttgggcgatgtttcacttgtggccttgtaacgcacgttggactaccgtgcttggggccggatttggatgaggacgatgatgctgctgagcagactgtgttgggatcccagggttgggctttggaggcaaatgggggtggcatgccaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

100

Amino Acids

11.29

Weight (kDa)

5.12

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 56, 250, 263
AcsI RAATTY 1 cut(s) 23
AfiI CCNNNNNNNGG 3 cut(s) 204, 265, 266
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 2 cut(s) 44, 149
AluI AGCT 2 cut(s) 44, 149
AlwI GGATC 3 cut(s) 56, 250, 263
AoxI GGCC 2 cut(s) 173, 207
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspS9I GGNCC 1 cut(s) 207
BamHI GGATCC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 1 cut(s) 261
BfaI CTAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 235
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 208, 257
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 259, 260
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 265, 266
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 259, 260
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 3 cut(s) 204, 265, 266
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 49, 229
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 175, 209
BsiSI CCGG 2 cut(s) 137, 210
BslI CCNNNNNNNGG 3 cut(s) 204, 265, 266
BsnI GGCC 2 cut(s) 175, 209
Bsp143I GATC 3 cut(s) 13, 61, 255
Bsp1720I GCTNAGC 1 cut(s) 238
BspANI GGCC 2 cut(s) 175, 209
BspCNI CTCAG 2 cut(s) 50, 230
BspLI GGNNCC 2 cut(s) 208, 257
BspPI GGATC 3 cut(s) 56, 250, 263
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 259, 260
BssMI GATC 3 cut(s) 13, 61, 255
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 199, 248
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 58, 238
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 3 cut(s) 16, 64, 258
BstMBI GATC 3 cut(s) 13, 61, 255
BstMWI GCNNNNNNNGC 3 cut(s) 89, 155, 276
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 61, 255
BstYI RGATCY 2 cut(s) 61, 255
BsuRI GGCC 2 cut(s) 175, 209
BtgZI GCGATG 2 cut(s) 107, 173
BtsCI GGATG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 207
CviAII CATG 1 cut(s) 293
CviJI RGCY 8 cut(s) 36, 44, 57, 77, 149, 175, 209, 270
CviKI_1 RGCY 8 cut(s) 36, 44, 57, 77, 149, 175, 209, 270
DdeI CTNAG 2 cut(s) 58, 238
DpnI GATC 3 cut(s) 15, 63, 257
DpnII GATC 3 cut(s) 13, 61, 255
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 296
FaiI YATR 2 cut(s) 142, 294
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 102
GluI GCNGC 1 cut(s) 235
GsaI CCCAGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 175, 209
HapII CCGG 2 cut(s) 137, 210
Hin1II CATG 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 42
HpaII CCGG 2 cut(s) 137, 210
Hpy188III TCNNGA 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 199, 248
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 155, 276
HpyF3I CTNAG 2 cut(s) 58, 238
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 3 cut(s) 13, 61, 255
LpnPI CCDG 5 cut(s) 22, 150, 223, 246, 273
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 15, 63, 257
MboI GATC 3 cut(s) 13, 61, 255
MflI RGATCY 2 cut(s) 61, 255
MluCI AATT 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 3 cut(s) 101, 215, 269
MseI TTAA 1 cut(s) 88
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 2 cut(s) 137, 210
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 89, 155, 276
NdeII GATC 3 cut(s) 13, 61, 255
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 2 cut(s) 208, 257
NspI RCATGY 1 cut(s) 296
PaeI GCATGC 1 cut(s) 296
PasI CCCWGGG 1 cut(s) 260
PkrI GCNGC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 208, 257
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 2 cut(s) 61, 255
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 88
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 3 cut(s) 13, 61, 255
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 261
SetI ASST 3 cut(s) 46, 151, 190
SfaNI GCATC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 297
SphI GCATGC 1 cut(s) 296
Sse9I AATT 1 cut(s) 23
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 199, 248
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 23
Tru1I TTAA 1 cut(s) 88
Tru9I TTAA 1 cut(s) 88
TseI GCWGC 1 cut(s) 234
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 296
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.