Rmu_sc0010496.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010496.1
OG0000187
Physical Location & Seq
Reverse (-)
11389 .. 12246
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010496.1_g000003.1.cds

Sequence Viewer

Length: 858 bp
atgactatgatcggctacacgctgggggattttcaggagattgataagactgctaagaagactgggaaactccagattagggttgaaatacctttgcataaaccattgcctttcaagcggtggtacttggaggaagatgcggtcgagtttcgctgccaattccgttatgacaagcttttcggaagatgctctgtatgtggattagtcacgcacgtgggtctgccatgctccggaccggcgttggatgaagccgatgatgaagccgagagaattgttttgggatcccagaacacggtgtcggagaggagtggtgggggctcgccgggagtttgggcggggtcaacatcggggcatgctagtggtagtgggctcaatactggtgtaagagctagggttaccaccccgtgtccaccattgatatttcggactccagatcctggtccgagtagggaaccatgtttgaatgttttgtttccaaagcagaagcgacttgttgtggtacgcgaactccaggggacagcggacactccagaactcatcactggcaagtgtcgagccagagaagaaagcctgactatctctcctaagaaactgaaattgagcttggcggtaggtaagagaaatctcactcttgattctgaaaatctgggattggaccctatacaggaggcgactcattctgggagtatgaaacggaagagaggacgaccttctggtagtagaaataaggcgtcgtctgatggcaagcagcagacctcaaaacagggtgagggtaaggcgaagaataagtccccaacgaagaagcaatctgtggggaaacactccaacccgaaagggacggagttggctcttttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

285

Amino Acids

30.92

Weight (kDa)

9.66

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AccII CGCG 1 cut(s) 504
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 5 cut(s) 118, 140, 335, 521, 608
AclWI GGATC 3 cut(s) 276, 289, 428
AcvI CACGTG 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 731
AdeI CACNNNGTG 1 cut(s) 405
AfaI GTAC 2 cut(s) 125, 501
AfiI CCNNNNNNNGG 5 cut(s) 79, 230, 292, 437, 664
AgsI TTSAA 3 cut(s) 86, 115, 463
AjnI CCWGG 2 cut(s) 436, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 3 cut(s) 175, 389, 603
AluI AGCT 3 cut(s) 175, 389, 603
AlwI GGATC 3 cut(s) 276, 289, 428
AlwNI CAGNNNCTG 1 cut(s) 437
Aor13HI TCCGGA 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 153, 748
ArsI GACNNNNNNTTYG 4 cut(s) 161, 193, 773, 805
AspS9I GGNCC 3 cut(s) 233, 440, 655
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 779
AvaII GGWCC 3 cut(s) 233, 440, 655
BamHI GGATCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 320, 372
BbrPI CACGTG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 140, 760
BccI CCATC 1 cut(s) 734
BciT130I CCWGG 2 cut(s) 438, 512
BcnI CCSGG 1 cut(s) 324
BfaI CTAG 2 cut(s) 357, 390
BisI GCNGC 2 cut(s) 154, 749
BlsI GCNGC 2 cut(s) 155, 750
Bme1390I CCNGG 3 cut(s) 324, 438, 512
Bme18I GGWCC 3 cut(s) 233, 440, 655
BmgT120I GGNCC 3 cut(s) 233, 440, 655
BmiI GGNNCC 3 cut(s) 283, 453, 657
BmrFI CCNGG 3 cut(s) 324, 438, 512
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 127, 176
BmuI ACTGGG 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 4 cut(s) 56, 414, 494, 513
BpuMI CCSGG 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 731
BsaJI CCNNGG 1 cut(s) 511
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 565, 595
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 230, 292, 437, 664
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 3 cut(s) 67, 382, 547
Bse3DI GCAATG 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 2 cut(s) 438, 512
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 5 cut(s) 79, 230, 292, 437, 664
BseMI GCAATG 1 cut(s) 104
BseNI ACTGG 3 cut(s) 67, 382, 547
BseRI GAGGAG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 140, 760
BseYI CCCAGC 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 504
Bsh1285I CGRYCG 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 3 cut(s) 231, 236, 323
BslFI GGGAC 3 cut(s) 529, 775, 850
BslI CCNNNNNNNGG 5 cut(s) 79, 230, 292, 437, 664
BsmFI GGGAC 3 cut(s) 529, 775, 850
Bsp1286I GDGCHC 2 cut(s) 320, 372
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 3 cut(s) 9, 281, 433
BspACI CCGC 5 cut(s) 118, 140, 335, 521, 608
BspEI TCCGGA 1 cut(s) 230
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 3 cut(s) 283, 453, 657
BspPI GGATC 3 cut(s) 276, 289, 428
BsrDI GCAATG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 3 cut(s) 67, 382, 547
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 3 cut(s) 9, 281, 433
BssNI GRCGYC 1 cut(s) 731
Bst2UI CCWGG 2 cut(s) 438, 512
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 692
BstACI GRCGYC 1 cut(s) 731
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 3 cut(s) 320, 354, 746
BstDEI CTNAG 2 cut(s) 54, 585
BstEII GGTNACC 1 cut(s) 394
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 504
BstKTI GATC 3 cut(s) 12, 284, 436
BstMBI GATC 3 cut(s) 9, 281, 433
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 2 cut(s) 438, 512
BstNSI RCATGY 1 cut(s) 356
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 322, 436, 510
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 140, 760
BstV2I GAAGAC 1 cut(s) 65
BstX2I RGATCY 2 cut(s) 281, 433
BstYI RGATCY 2 cut(s) 281, 433
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 540
Cac8I GCNNGC 3 cut(s) 320, 354, 746
CaiI CAGNNNCTG 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 3 cut(s) 233, 440, 655
CpoI CGGWCCG 1 cut(s) 233
CseI GACGC 1 cut(s) 720
Csp6I GTAC 2 cut(s) 124, 500
CspI CGGWCCG 1 cut(s) 233
CviAII CATG 3 cut(s) 225, 353, 456
CviQI GTAC 2 cut(s) 124, 500
DdeI CTNAG 2 cut(s) 54, 585
DpnI GATC 3 cut(s) 11, 283, 435
DpnII GATC 3 cut(s) 9, 281, 433
DraIII CACNNNGTG 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Eco24I GRGCYC 2 cut(s) 320, 372
Eco47I GGWCC 3 cut(s) 233, 440, 655
Eco72I CACGTG 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 394
EcoRII CCWGG 2 cut(s) 436, 510
EcoT38I GRGCYC 2 cut(s) 320, 372
FaeI CATG 3 cut(s) 228, 356, 459
FaiI YATR 9 cut(s) 8, 99, 168, 196, 226, 354, 457, 662, 689
FaqI GGGAC 3 cut(s) 529, 775, 850
FatI CATG 3 cut(s) 224, 352, 455
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 154, 749
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 2 cut(s) 320, 372
Fsp4HI GCNGC 2 cut(s) 154, 749
FspBI CTAG 2 cut(s) 357, 390
GluI GCNGC 2 cut(s) 154, 749
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 4 cut(s) 56, 414, 494, 513
HapII CCGG 3 cut(s) 231, 236, 323
HgaI GACGC 1 cut(s) 720
Hin1I GRCGYC 1 cut(s) 731
Hin1II CATG 3 cut(s) 228, 356, 459
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 3 cut(s) 427, 635, 673
HpaII CCGG 3 cut(s) 231, 236, 323
HphI GGTGA 1 cut(s) 779
Hpy166II GTNNAC 2 cut(s) 342, 410
Hpy188I TCNGA 6 cut(s) 182, 301, 426, 444, 640, 739
Hpy188III TCNNGA 6 cut(s) 35, 73, 231, 431, 530, 632
Hpy8I GTNNAC 2 cut(s) 342, 410
Hpy99I CGWCG 1 cut(s) 736
HpyAV CCTTC 1 cut(s) 720
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 54, 585
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 731
Hsp92II CATG 3 cut(s) 228, 356, 459
Kpn2I TCCGGA 1 cut(s) 230
Kzo9I GATC 3 cut(s) 9, 281, 433
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 2 cut(s) 140, 760
LweI GCATC 2 cut(s) 127, 176
MaeI CTAG 2 cut(s) 357, 390
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 205, 394
MalI GATC 3 cut(s) 11, 283, 435
MboI GATC 3 cut(s) 9, 281, 433
MboII GAAGA 7 cut(s) 70, 146, 195, 575, 709, 793, 811
MflI RGATCY 2 cut(s) 281, 433
MhlI GDGCHC 2 cut(s) 320, 372
MluCI AATT 3 cut(s) 158, 270, 596
MlyI GAGTC 2 cut(s) 421, 667
MmeI TCCRAC 3 cut(s) 222, 279, 849
MnlI CCTC 6 cut(s) 124, 297, 661, 695, 763, 766
MroI TCCGGA 1 cut(s) 230
MseI TTAA 1 cut(s) 856
MslI CAYNNNNRTG 2 cut(s) 212, 357
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 3 cut(s) 231, 236, 323
MspR9I CCNGG 3 cut(s) 324, 438, 512
MvaI CCWGG 2 cut(s) 438, 512
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 324
NdeII GATC 3 cut(s) 9, 281, 433
NlaIII CATG 3 cut(s) 228, 356, 459
NlaIV GGNNCC 3 cut(s) 283, 453, 657
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 356
OliI CACNNNNGTG 1 cut(s) 212
PaeI GCATGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 635
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 2 cut(s) 155, 750
PleI GAGTC 2 cut(s) 421, 667
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 2 cut(s) 421, 667
Ppu21I YACGTR 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 436, 510
PspCI CACGTG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 2 cut(s) 436, 510
PspN4I GGNNCC 3 cut(s) 283, 453, 657
PspPI GGNCC 3 cut(s) 233, 440, 655
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 281, 433
RsaI GTAC 2 cut(s) 125, 501
RsaNI GTAC 2 cut(s) 124, 500
RseI CAYNNNNRTG 2 cut(s) 212, 357
Rsr2I CGGWCCG 1 cut(s) 233
RsrII CGGWCCG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 856
SatI GCNGC 2 cut(s) 154, 749
Sau3AI GATC 3 cut(s) 9, 281, 433
Sau96I GGNCC 3 cut(s) 233, 440, 655
SchI GAGTC 2 cut(s) 421, 667
ScrFI CCNGG 3 cut(s) 324, 438, 512
SduI GDGCHC 2 cut(s) 320, 372
SetI ASST 8 cut(s) 94, 177, 216, 391, 605, 616, 712, 758
SfaNI GCATC 2 cut(s) 127, 176
SinI GGWCC 3 cut(s) 233, 440, 655
SmiMI CAYNNNNRTG 2 cut(s) 212, 357
SphI GCATGC 1 cut(s) 356
Sse9I AATT 3 cut(s) 158, 270, 596
SsiI CCGC 5 cut(s) 118, 140, 335, 521, 608
SspMI CTAG 2 cut(s) 357, 390
StyD4I CCNGG 3 cut(s) 322, 436, 510
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 144, 553
TasI AATT 3 cut(s) 158, 270, 596
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 1 cut(s) 856
Tru9I TTAA 1 cut(s) 856
TscAI CASTG 1 cut(s) 547
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 153, 748
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 261, 273, 704
TspGWI ACGGA 3 cut(s) 152, 709, 854
TspRI CASTG 1 cut(s) 547
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 3 cut(s) 233, 440, 655
XceI RCATGY 1 cut(s) 356
XspI CTAG 2 cut(s) 357, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.