Rmu_ssc0000154.1_g000037

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000154.1
OG0000187
Physical Location & Seq
Reverse (-)
210547 .. 211473
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000154.1_g000037.1.cds

Sequence Viewer

Length: 927 bp
atgtcttctgttgatgcaatggctgctagactagcctcctctcttgctatcgctgaaggcaagaggcagattgatctgcgaccaacgcagggcaaaggtttgcgacaggcaaacgttttcttggtggaggaggcagaagagcagagggtgatcttcacgttgtcggatccggctgatcgggttcgaatctggcgtggtgctccatggggatataatcacgctccggtggctttggcttggtatgatggtgtcatgccggtggagaaggtgcctttaactaggtcatcatattggatcactcttcagaagataccaccggcgttcaggtcggagcgcgtcatgaccatgatcggttatacgctgggggacttccaggaaattgataagaatgccaagaaaacggggcaactccggattagggttgagataccgctgaataaaccattgcccttcaagcgatggtacttggtggaggatgaggtagacttttgctgtcaattccgatatgataaactctttgggcggtgttcagtgtgtgggctagtcacgcacgtggggttgccttgctcagggccggcgctggatgaagatgatgatgaagcagagcgcactgttctagggtctcagaccgtgatgccggagatgcatagtgggggttcgtcaaggcaaggagcctgggcgggatccacatcaggcactgctactggtgtgcgagttaggggttctaacccatgtcctccgttggtgtttcggactcctgatcccagtccgagtggggagccaggtctgactgttccagctatgaagccgaaacgacaagtgctggtccgtgaccttcaggagacagcagagtctccggaacgcataactggcaaacgtcggggacgtgaagacagcatgtataatttctatccagctgctagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

308

Amino Acids

34.19

Weight (kDa)

8.49

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 850
AccB1I GGYRCC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 336
AccIII TCCGGA 2 cut(s) 411, 856
AciI CCGC 3 cut(s) 431, 523, 680
AclI AACGTT 1 cut(s) 114
AclWI GGATC 6 cut(s) 161, 174, 302, 678, 691, 755
AcuI CTGAAG 3 cut(s) 75, 287, 821
AcvI CACGTG 1 cut(s) 553
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 3 cut(s) 89, 418, 569
AgsI TTSAA 1 cut(s) 454
AjiI CACGTC 1 cut(s) 887
AjnI CCWGG 3 cut(s) 372, 674, 781
AleI CACNNNNGTG 1 cut(s) 551
AluBI AGCT 3 cut(s) 800, 917, 924
AluI AGCT 3 cut(s) 800, 917, 924
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 3 cut(s) 627, 836, 858
AlwI GGATC 6 cut(s) 161, 174, 302, 678, 691, 755
AlwNI CAGNNNCTG 1 cut(s) 698
Aor13HI TCCGGA 2 cut(s) 411, 856
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 2 cut(s) 23, 917
AspLEI GCGC 3 cut(s) 336, 580, 609
AspS9I GGNCC 2 cut(s) 572, 826
AsuHPI GGTGA 1 cut(s) 160
AsuII TTCGAA 1 cut(s) 184
AsuNHI GCTAGC 1 cut(s) 920
AvaII GGWCC 1 cut(s) 826
BamHI GGATCC 2 cut(s) 166, 683
BanI GGYRCC 1 cut(s) 268
BbrPI CACGTG 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 10, 904
BccI CCATC 2 cut(s) 239, 453
BciT130I CCWGG 3 cut(s) 374, 676, 783
BcoDI GTCTC 3 cut(s) 627, 836, 858
BfaI CTAG 6 cut(s) 27, 32, 279, 542, 617, 921
BfoI RGCGCY 1 cut(s) 581
BisI GCNGC 2 cut(s) 24, 918
BlsI GCNGC 2 cut(s) 25, 919
Bme1390I CCNGG 3 cut(s) 374, 676, 783
Bme18I GGWCC 1 cut(s) 826
BmgBI CACGTC 1 cut(s) 887
BmgT120I GGNCC 2 cut(s) 572, 826
BmiI GGNNCC 5 cut(s) 168, 270, 673, 685, 780
BmrFI CCNGG 3 cut(s) 374, 676, 783
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 3 cut(s) 4, 624, 633
BmtI GCTAGC 1 cut(s) 924
BmuI ACTGGG 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 568
Bpu14I TTCGAA 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 553
BsaBI GATNNNNATC 1 cut(s) 688
BsaI GGTCTC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 203, 675
BsaWI WCCGGW 3 cut(s) 223, 411, 856
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 418, 569
Bse118I RCCGGY 3 cut(s) 256, 316, 574
Bse1I ACTGG 3 cut(s) 709, 765, 874
Bse3DI GCAATG 2 cut(s) 24, 443
Bse8I GATNNNNATC 1 cut(s) 688
BseAI TCCGGA 2 cut(s) 411, 856
BseBI CCWGG 3 cut(s) 374, 676, 783
BseDI CCNNGG 2 cut(s) 203, 675
BseGI GGATG 2 cut(s) 481, 589
BseJI GATNNNNATC 1 cut(s) 688
BseLI CCNNNNNNNGG 3 cut(s) 89, 418, 569
BseMI GCAATG 2 cut(s) 24, 443
BseMII CTCAG 2 cut(s) 582, 638
BseNI ACTGG 3 cut(s) 709, 765, 874
BseRI GAGGAG 2 cut(s) 28, 143
BseXI GCAGC 2 cut(s) 10, 904
BseYI CCCAGC 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 1 cut(s) 574
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 8 cut(s) 170, 224, 257, 317, 412, 575, 638, 857
BslFI GGGAC 2 cut(s) 380, 897
BslI CCNNNNNNNGG 3 cut(s) 89, 418, 569
BsmAI GTCTC 3 cut(s) 627, 836, 858
BsmFI GGGAC 2 cut(s) 380, 897
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 574
Bso31I GGTCTC 1 cut(s) 627
Bsp119I TTCGAA 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 202
Bsp13I TCCGGA 2 cut(s) 411, 856
Bsp143I GATC 8 cut(s) 73, 150, 166, 175, 294, 348, 683, 760
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 3 cut(s) 431, 523, 680
BspANI GGCC 1 cut(s) 574
BspCNI CTCAG 2 cut(s) 581, 637
BspEI TCCGGA 2 cut(s) 411, 856
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 5 cut(s) 168, 270, 673, 685, 780
BspOI GCTAGC 1 cut(s) 924
BspPI GGATC 6 cut(s) 161, 174, 302, 678, 691, 755
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 627
BsrDI GCAATG 2 cut(s) 24, 443
BsrFI RCCGGY 3 cut(s) 256, 316, 574
BsrI ACTGG 3 cut(s) 709, 765, 874
BssAI RCCGGY 3 cut(s) 256, 316, 574
BssECI CCNNGG 2 cut(s) 203, 675
BssMI GATC 8 cut(s) 73, 150, 166, 175, 294, 348, 683, 760
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 3 cut(s) 374, 676, 783
Bst4CI ACNGT 3 cut(s) 613, 631, 793
Bst6I CTCTTC 2 cut(s) 132, 306
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 553
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 576, 922
BstDEI CTNAG 2 cut(s) 568, 624
BstDSI CCRYGG 1 cut(s) 203
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 2 cut(s) 481, 589
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 3 cut(s) 336, 580, 609
BstKTI GATC 8 cut(s) 76, 153, 169, 178, 297, 351, 686, 763
BstMAI GTCTC 3 cut(s) 627, 836, 858
BstMBI GATC 8 cut(s) 73, 150, 166, 175, 294, 348, 683, 760
BstMWI GCNNNNNNNGC 8 cut(s) 23, 32, 85, 227, 454, 547, 643, 870
BstNI CCWGG 3 cut(s) 374, 676, 783
BstNSI RCATGY 1 cut(s) 901
BstSCI CCNGG 3 cut(s) 372, 674, 781
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 10, 904
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 166, 683
BstYI RGATCY 2 cut(s) 166, 683
BsuRI GGCC 1 cut(s) 574
BtgI CCRYGG 1 cut(s) 203
BtgZI GCGATG 1 cut(s) 472
BtrI CACGTC 1 cut(s) 887
BtsCI GGATG 2 cut(s) 481, 589
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 3 cut(s) 537, 609, 696
Cac8I GCNNGC 2 cut(s) 576, 922
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 339
CfoI GCGC 3 cut(s) 336, 580, 609
Cfr10I RCCGGY 3 cut(s) 256, 316, 574
Cfr13I GGNCC 2 cut(s) 572, 826
CseI GACGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 463
CviAII CATG 6 cut(s) 204, 253, 340, 346, 732, 898
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 568, 624
DpnI GATC 8 cut(s) 75, 152, 168, 177, 296, 350, 685, 762
DpnII GATC 8 cut(s) 73, 150, 166, 175, 294, 348, 683, 760
DrdI GACNNNNNNGTC 1 cut(s) 850
DseDI GACNNNNNNGTC 1 cut(s) 850
Eam1104I CTCTTC 2 cut(s) 132, 306
EarI CTCTTC 2 cut(s) 132, 306
Eco130I CCWWGG 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 627
Eco47I GGWCC 1 cut(s) 826
Eco57I CTGAAG 3 cut(s) 75, 287, 821
Eco72I CACGTG 1 cut(s) 553
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoRII CCWGG 3 cut(s) 372, 674, 781
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 6 cut(s) 207, 256, 343, 349, 735, 901
FaqI GGGAC 2 cut(s) 380, 897
FatI CATG 6 cut(s) 203, 252, 339, 345, 731, 897
FauI CCCGC 1 cut(s) 673
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 24, 918
FokI GGATG 2 cut(s) 488, 596
Fsp4HI GCNGC 2 cut(s) 24, 918
FspBI CTAG 6 cut(s) 27, 32, 279, 542, 617, 921
GlaI GCGC 3 cut(s) 335, 579, 608
GluI GCNGC 2 cut(s) 24, 918
GsaI CCCAGC 1 cut(s) 365
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 1 cut(s) 574
HapII CCGG 8 cut(s) 170, 224, 257, 317, 412, 575, 638, 857
HgaI GACGC 1 cut(s) 325
HhaI GCGC 3 cut(s) 336, 580, 609
Hin1II CATG 6 cut(s) 207, 256, 343, 349, 735, 901
Hin6I GCGC 3 cut(s) 334, 578, 607
HinP1I GCGC 3 cut(s) 334, 578, 607
HinfI GANTC 3 cut(s) 186, 754, 851
HpaII CCGG 8 cut(s) 170, 224, 257, 317, 412, 575, 638, 857
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 8 cut(s) 166, 306, 331, 503, 627, 753, 771, 789
Hpy188III TCNNGA 5 cut(s) 340, 412, 758, 839, 857
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 1 cut(s) 882
HpyAV CCTTC 4 cut(s) 50, 259, 460, 845
HpyCH4III ACNGT 3 cut(s) 613, 631, 793
HpyCH4IV ACGT 5 cut(s) 114, 158, 552, 877, 886
HpyCH4V TGCA 2 cut(s) 17, 646
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 32, 85, 227, 454, 547, 643, 870
HpyF3I CTNAG 2 cut(s) 568, 624
HpySE526I ACGT 5 cut(s) 114, 158, 552, 877, 886
Hsp92II CATG 6 cut(s) 207, 256, 343, 349, 735, 901
HspAI GCGC 3 cut(s) 334, 578, 607
Kpn2I TCCGGA 2 cut(s) 411, 856
KroI GCCGGC 1 cut(s) 574
KroNI GCCGGC 1 cut(s) 576
Kzo9I GATC 8 cut(s) 73, 150, 166, 175, 294, 348, 683, 760
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 5 cut(s) 205, 226, 331, 671, 778
Lsp1109I GCAGC 2 cut(s) 10, 904
LweI GCATC 3 cut(s) 4, 624, 633
MaeI CTAG 6 cut(s) 27, 32, 279, 542, 617, 921
MaeII ACGT 5 cut(s) 114, 158, 552, 877, 886
MaeIII GTNAC 2 cut(s) 544, 830
MalI GATC 8 cut(s) 75, 152, 168, 177, 296, 350, 685, 762
MboI GATC 8 cut(s) 73, 150, 166, 175, 294, 348, 683, 760
MboII GAAGA 6 cut(s) 145, 149, 293, 319, 599, 902
MflI RGATCY 2 cut(s) 166, 683
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 3 cut(s) 378, 497, 904
MlyI GAGTC 2 cut(s) 748, 860
MmeI TCCRAC 2 cut(s) 144, 309
MnlI CCTC 9 cut(s) 46, 49, 57, 121, 124, 138, 466, 472, 747
Mph1103I ATGCAT 1 cut(s) 648
MroI TCCGGA 2 cut(s) 411, 856
MroNI GCCGGC 1 cut(s) 574
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 3 cut(s) 257, 344, 551
MspA1I CMGCKG 2 cut(s) 433, 917
MspI CCGG 8 cut(s) 170, 224, 257, 317, 412, 575, 638, 857
MspR9I CCNGG 3 cut(s) 374, 676, 783
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 3 cut(s) 374, 676, 783
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 8 cut(s) 23, 32, 85, 227, 454, 547, 643, 870
NaeI GCCGGC 1 cut(s) 576
NcoI CCATGG 1 cut(s) 203
NdeII GATC 8 cut(s) 73, 150, 166, 175, 294, 348, 683, 760
NgoMIV GCCGGC 1 cut(s) 574
NheI GCTAGC 1 cut(s) 920
NlaIII CATG 6 cut(s) 207, 256, 343, 349, 735, 901
NlaIV GGNNCC 5 cut(s) 168, 270, 673, 685, 780
NmuCI GTSAC 2 cut(s) 544, 830
NsiI ATGCAT 1 cut(s) 648
NspI RCATGY 1 cut(s) 901
NspV TTCGAA 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 551
PagI TCATGA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 2 cut(s) 190, 883
PctI GAATGC 1 cut(s) 394
PdiI GCCGGC 1 cut(s) 576
PfeI GAWTC 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 372
PkrI GCNGC 2 cut(s) 25, 919
PleI GAGTC 2 cut(s) 748, 859
PmaCI CACGTG 1 cut(s) 553
PmlI CACGTG 1 cut(s) 553
PpsI GAGTC 2 cut(s) 748, 859
Ppu21I YACGTR 1 cut(s) 553
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 3 cut(s) 372, 674, 781
PspCI CACGTG 1 cut(s) 553
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 3 cut(s) 372, 674, 781
PspN4I GGNNCC 5 cut(s) 168, 270, 673, 685, 780
PspPI GGNCC 2 cut(s) 572, 826
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 2 cut(s) 166, 683
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 3 cut(s) 257, 344, 551
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 2 cut(s) 24, 918
Sau3AI GATC 8 cut(s) 73, 150, 166, 175, 294, 348, 683, 760
Sau96I GGNCC 2 cut(s) 572, 826
SchI GAGTC 2 cut(s) 748, 860
ScrFI CCNGG 3 cut(s) 374, 676, 783
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 3 cut(s) 4, 624, 633
SfuI TTCGAA 1 cut(s) 184
SgrAI CRCCGGYG 1 cut(s) 316
SinI GGWCC 1 cut(s) 826
SmiMI CAYNNNNRTG 3 cut(s) 257, 344, 551
Sse9I AATT 3 cut(s) 378, 497, 904
SsiI CCGC 3 cut(s) 431, 523, 680
SspMI CTAG 6 cut(s) 27, 32, 279, 542, 617, 921
StyD4I CCNGG 3 cut(s) 372, 674, 781
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 613, 631, 793
TaiI ACGT 5 cut(s) 117, 161, 555, 880, 889
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 378, 497, 904
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 3 cut(s) 537, 616, 703
TseFI GTSAC 2 cut(s) 544, 830
TseI GCWGC 2 cut(s) 23, 917
Tsp45I GTSAC 2 cut(s) 544, 830
TspDTI ATGAA 3 cut(s) 600, 612, 818
TspGWI ACGGA 2 cut(s) 729, 818
TspRI CASTG 3 cut(s) 537, 616, 703
VpaK11BI GGWCC 1 cut(s) 826
XagI CCTNNNNNAGG 1 cut(s) 567
XceI RCATGY 1 cut(s) 901
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 6 cut(s) 27, 32, 279, 542, 617, 921
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.