Rmu_sc0005708.1_g000017

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005708.1
OG0000187
Physical Location & Seq
Reverse (-)
75675 .. 77935
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005708.1_g000017.1.cds

Sequence Viewer

Length: 759 bp
atgctttctcttatgtactccgagagtcgcaaaccttctgttcctcggacgaagcccagaagagctggaaacgtggccgataatgaagaatacggcaaagccgtggctacccaaaactcaaatcagtcaaaacttaatcaaattctaaaactcaacacaccggcatgtaaaccaggacaggaagatgaagtttcataccagacgcagcttaatcgatcgccggaagttgcagagatggctggagaaagctcgaggcttcccgtcattgttgctccattcaccctcgacgcggctgatcgggatcgtatctggaagggagccccatggggctataaccatgcaccaatttccctatcctattatgacggcgtcgctgatattgaatctgttccattcacaacatcctcatactggattacactacaaggaatccctccggcttttcgctctgaaagggcgatgacaatgattgggtacacccttggagatttcaaagagattgacaaacaggcaaagaaagtcaaaaatctccaaattagggtggagatcccattcaatcagtcgctgtcgttcaaatgctggtattgggttgaggacgaggtcgaggtcgagttcctctacaagttcaggtatgataagctctttggtaggtgtgctacttgtggatttgttactcatgtaggactcccatgcttgggtccaactttggaagaaaacgaggaggcagaacacaccttgttgggtgcaaaaatggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

252

Amino Acids

28.46

Weight (kDa)

5.76

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 290
AclWI GGATC 2 cut(s) 309, 541
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 2 cut(s) 17, 476
AfiI CCNNNNNNNGG 5 cut(s) 289, 411, 538, 694, 695
AgsI TTSAA 4 cut(s) 383, 493, 556, 574
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 4 cut(s) 65, 208, 249, 640
AluI AGCT 4 cut(s) 65, 208, 249, 640
AlwI GGATC 2 cut(s) 309, 541
AlwNI CAGNNNCTG 1 cut(s) 565
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 698
AsuHPI GGTGA 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 250
AvaII GGWCC 1 cut(s) 698
BanII GRGCYC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 229
BceAI ACGGC 3 cut(s) 86, 109, 382
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 174
BisI GCNGC 2 cut(s) 206, 291
BlsI GCNGC 2 cut(s) 207, 292
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 698
BmiI GGNNCC 2 cut(s) 319, 699
BmrFI CCNGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 369
BsaJI CCNNGG 4 cut(s) 44, 102, 323, 481
Bsc4I CCNNNNNNNGG 5 cut(s) 289, 411, 538, 694, 695
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 416
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 214
BseDI CCNNGG 4 cut(s) 44, 102, 323, 481
BseGI GGATG 1 cut(s) 401
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 5 cut(s) 289, 411, 538, 694, 695
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 734
BseXI GCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 77
BshVI ATCGAT 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 3 cut(s) 161, 221, 437
BslI CCNNNNNNNGG 5 cut(s) 289, 411, 538, 694, 695
BsnI GGCC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 4 cut(s) 215, 295, 301, 546
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 77
BspDI ATCGAT 1 cut(s) 214
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 319, 699
BspPI GGATC 2 cut(s) 309, 541
BspQI GCTCTTC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 4 cut(s) 44, 102, 323, 481
BssMI GATC 4 cut(s) 215, 295, 301, 546
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 2 cut(s) 323, 481
Bst2UI CCWGG 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 369
BstDSI CCRYGG 2 cut(s) 102, 323
BstF5I GGATG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 4 cut(s) 218, 298, 304, 549
BstMBI GATC 4 cut(s) 215, 295, 301, 546
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 172
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
Bsu15I ATCGAT 1 cut(s) 214
BsuRI GGCC 1 cut(s) 77
BsuTUI ATCGAT 1 cut(s) 214
BtgI CCRYGG 2 cut(s) 102, 323
BtgZI GCGATG 1 cut(s) 473
BtsCI GGATG 1 cut(s) 401
CaiI CAGNNNCTG 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 698
ClaI ATCGAT 1 cut(s) 214
CseI GACGC 3 cut(s) 211, 296, 358
Csp6I GTAC 2 cut(s) 16, 475
CviAII CATG 5 cut(s) 165, 324, 338, 677, 690
CviQI GTAC 2 cut(s) 16, 475
DpnI GATC 4 cut(s) 217, 297, 303, 548
DpnII GATC 4 cut(s) 215, 295, 301, 546
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 323, 481
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 698
Eco88I CYCGRG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 323, 481
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 323, 481
FaeI CATG 5 cut(s) 168, 327, 341, 680, 693
FatI CATG 5 cut(s) 164, 323, 337, 676, 689
Fnu4HI GCNGC 2 cut(s) 206, 291
FokI GGATG 1 cut(s) 388
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 2 cut(s) 206, 291
GluI GCNGC 2 cut(s) 206, 291
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 77
HapII CCGG 3 cut(s) 161, 221, 437
HgaI GACGC 3 cut(s) 211, 296, 358
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 5 cut(s) 168, 327, 341, 680, 693
HinfI GANTC 4 cut(s) 25, 383, 429, 684
HpaII CCGG 3 cut(s) 161, 221, 437
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 170, 477
Hpy188I TCNGA 3 cut(s) 22, 48, 451
Hpy188III TCNNGA 2 cut(s) 299, 310
Hpy8I GTNNAC 2 cut(s) 170, 477
Hpy99I CGWCG 2 cut(s) 290, 374
HpyAV CCTTC 2 cut(s) 45, 307
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 230, 341, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 5 cut(s) 168, 327, 341, 680, 693
Kzo9I GATC 4 cut(s) 215, 295, 301, 546
LguI GCTCTTC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 277, 317
Lsp1109I GCAGC 1 cut(s) 217
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 670
MalI GATC 4 cut(s) 217, 297, 303, 548
MboI GATC 4 cut(s) 215, 295, 301, 546
MboII GAAGA 4 cut(s) 72, 98, 194, 722
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 3 cut(s) 141, 345, 534
MlyI GAGTC 2 cut(s) 34, 678
MmeI TCCRAC 1 cut(s) 725
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 2 cut(s) 135, 210
MslI CAYNNNNRTG 1 cut(s) 163
MspI CCGG 3 cut(s) 161, 221, 437
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 236
NcoI CCATGG 1 cut(s) 323
NdeII GATC 4 cut(s) 215, 295, 301, 546
NlaIII CATG 5 cut(s) 168, 327, 341, 680, 693
NlaIV GGNNCC 2 cut(s) 319, 699
NspI RCATGY 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 383, 429
PflFI GACNNNGTC 2 cut(s) 368, 599
PkrI GCNGC 2 cut(s) 207, 292
Ple19I CGATCG 1 cut(s) 218
PleI GAGTC 2 cut(s) 33, 678
PpsI GAGTC 2 cut(s) 33, 678
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 319, 699
PspPI GGNCC 1 cut(s) 698
PspXI VCTCGAGB 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 565
PsuI RGATCY 1 cut(s) 546
PsyI GACNNNGTC 2 cut(s) 368, 599
PvuI CGATCG 1 cut(s) 218
RsaI GTAC 2 cut(s) 17, 476
RsaNI GTAC 2 cut(s) 16, 475
RseI CAYNNNNRTG 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 135, 210
SatI GCNGC 2 cut(s) 206, 291
Sau3AI GATC 4 cut(s) 215, 295, 301, 546
Sau96I GGNCC 1 cut(s) 698
SchI GAGTC 2 cut(s) 34, 678
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 322
Sfr274I CTCGAG 1 cut(s) 250
SinI GGWCC 1 cut(s) 698
SlaI CTCGAG 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 3 cut(s) 141, 345, 534
SsiI CCGC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 2 cut(s) 323, 481
TaiI ACGT 1 cut(s) 75
TaqI TCGA 5 cut(s) 214, 251, 285, 603, 609
TasI AATT 3 cut(s) 141, 345, 534
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 2 cut(s) 383, 429
Tru1I TTAA 2 cut(s) 135, 210
Tru9I TTAA 2 cut(s) 135, 210
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 99, 183, 201
Tth111I GACNNNGTC 2 cut(s) 368, 599
VpaK11BI GGWCC 1 cut(s) 698
XapI RAATTY 1 cut(s) 141
XceI RCATGY 1 cut(s) 168
XhoI CTCGAG 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.