Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 167 |
| AccII | CGCG | 1 cut(s) | 200 |
| AciI | CCGC | 1 cut(s) | 488 |
| AclWI | GGATC | 5 cut(s) | 36, 78, 91, 131, 475 |
| AcoI | YGGCCR | 1 cut(s) | 109 |
| AcsI | RAATTY | 1 cut(s) | 247 |
| AcuI | CTGAAG | 2 cut(s) | 516, 686 |
| AcyI | GRCGYC | 1 cut(s) | 224 |
| AfaI | GTAC | 2 cut(s) | 32, 182 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 51, 177, 273, 416 |
| AgsI | TTSAA | 2 cut(s) | 577, 667 |
| AjnI | CCWGG | 1 cut(s) | 567 |
| AluBI | AGCT | 7 cut(s) | 530, 536, 634, 700, 787, 793, 798 |
| AluI | AGCT | 7 cut(s) | 530, 536, 634, 700, 787, 793, 798 |
| Alw26I | GTCTC | 1 cut(s) | 95 |
| AlwI | GGATC | 5 cut(s) | 36, 78, 91, 131, 475 |
| Ama87I | CYCGRG | 2 cut(s) | 24, 415 |
| AoxI | GGCC | 4 cut(s) | 109, 237, 381, 419 |
| ApeKI | GCWGC | 3 cut(s) | 520, 561, 564 |
| ApoI | RAATTY | 1 cut(s) | 247 |
| AspLEI | GCGC | 1 cut(s) | 202 |
| AspS9I | GGNCC | 2 cut(s) | 238, 419 |
| AsuC2I | CCSGG | 2 cut(s) | 194, 525 |
| AsuHPI | GGTGA | 1 cut(s) | 700 |
| AvaI | CYCGRG | 2 cut(s) | 24, 415 |
| BaeGI | GKGCMC | 1 cut(s) | 172 |
| BamHI | GGATCC | 1 cut(s) | 83 |
| BanI | GGYRCC | 1 cut(s) | 167 |
| BbvCI | CCTCAGC | 1 cut(s) | 630 |
| BbvI | GCAGC | 3 cut(s) | 532, 573, 576 |
| BccI | CCATC | 1 cut(s) | 209 |
| BceAI | ACGGC | 1 cut(s) | 124 |
| BciT130I | CCWGG | 1 cut(s) | 569 |
| BclI | TGATCA | 1 cut(s) | 690 |
| BcnI | CCSGG | 2 cut(s) | 194, 525 |
| BcoDI | GTCTC | 1 cut(s) | 95 |
| BfaI | CTAG | 4 cut(s) | 582, 608, 635, 811 |
| BisI | GCNGC | 3 cut(s) | 521, 562, 565 |
| BlpI | GCTNAGC | 1 cut(s) | 794 |
| BlsI | GCNGC | 3 cut(s) | 522, 563, 566 |
| Bme1390I | CCNGG | 3 cut(s) | 194, 525, 569 |
| BmeT110I | CYCGRG | 2 cut(s) | 24, 415 |
| BmgT120I | GGNCC | 2 cut(s) | 238, 419 |
| BmiI | GGNNCC | 4 cut(s) | 85, 169, 420, 645 |
| BmrFI | CCNGG | 3 cut(s) | 194, 525, 569 |
| BmsI | GCATC | 1 cut(s) | 507 |
| Bpu10I | CCTNAGC | 1 cut(s) | 630 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 794 |
| BpuMI | CCSGG | 2 cut(s) | 194, 525 |
| Bsa29I | ATCGAT | 1 cut(s) | 363 |
| BsaHI | GRCGYC | 1 cut(s) | 224 |
| BsaJI | CCNNGG | 4 cut(s) | 49, 192, 228, 674 |
| BsaWI | WCCGGW | 1 cut(s) | 721 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 51, 177, 273, 416 |
| Bse118I | RCCGGY | 1 cut(s) | 421 |
| Bse1I | ACTGG | 1 cut(s) | 739 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| BseBI | CCWGG | 1 cut(s) | 569 |
| BseCI | ATCGAT | 1 cut(s) | 363 |
| BseDI | CCNNGG | 4 cut(s) | 49, 192, 228, 674 |
| BseGI | GGATG | 2 cut(s) | 60, 442 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 51, 177, 273, 416 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseMII | CTCAG | 4 cut(s) | 441, 644, 644, 747 |
| BseNI | ACTGG | 1 cut(s) | 739 |
| BseRI | GAGGAG | 4 cut(s) | 113, 446, 639, 773 |
| BseSI | GKGCMC | 1 cut(s) | 172 |
| BseXI | GCAGC | 3 cut(s) | 532, 573, 576 |
| BsgI | GTGCAG | 1 cut(s) | 462 |
| Bsh1236I | CGCG | 1 cut(s) | 200 |
| Bsh1285I | CGRYCG | 1 cut(s) | 198 |
| BshFI | GGCC | 4 cut(s) | 111, 239, 383, 421 |
| BshNI | GGYRCC | 1 cut(s) | 167 |
| BshVI | ATCGAT | 1 cut(s) | 363 |
| BsiEI | CGRYCG | 1 cut(s) | 198 |
| BsiHKCI | CYCGRG | 2 cut(s) | 24, 415 |
| BsiSI | CCGG | 5 cut(s) | 194, 384, 422, 524, 722 |
| BslFI | GGGAC | 1 cut(s) | 562 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 51, 177, 273, 416 |
| BsmAI | GTCTC | 1 cut(s) | 95 |
| BsmFI | GGGAC | 1 cut(s) | 562 |
| BsmI | GAATGC | 1 cut(s) | 583 |
| BsnI | GGCC | 4 cut(s) | 111, 239, 383, 421 |
| BsoBI | CYCGRG | 2 cut(s) | 24, 415 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp143I | GATC | 8 cut(s) | 41, 75, 83, 136, 360, 467, 690, 752 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 794 |
| BspACI | CCGC | 1 cut(s) | 488 |
| BspANI | GGCC | 4 cut(s) | 111, 239, 383, 421 |
| BspCNI | CTCAG | 4 cut(s) | 442, 643, 645, 748 |
| BspDI | ATCGAT | 1 cut(s) | 363 |
| BspFNI | CGCG | 1 cut(s) | 200 |
| BspLI | GGNNCC | 4 cut(s) | 85, 169, 420, 645 |
| BspPI | GGATC | 5 cut(s) | 36, 78, 91, 131, 475 |
| BspT107I | GGYRCC | 1 cut(s) | 167 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BsrFI | RCCGGY | 1 cut(s) | 421 |
| BsrI | ACTGG | 1 cut(s) | 739 |
| BssAI | RCCGGY | 1 cut(s) | 421 |
| BssECI | CCNNGG | 4 cut(s) | 49, 192, 228, 674 |
| BssMI | GATC | 8 cut(s) | 41, 75, 83, 136, 360, 467, 690, 752 |
| BssNI | GRCGYC | 1 cut(s) | 224 |
| BssT1I | CCWWGG | 1 cut(s) | 49 |
| Bst2UI | CCWGG | 1 cut(s) | 569 |
| Bst4CI | ACNGT | 1 cut(s) | 460 |
| BstACI | GRCGYC | 1 cut(s) | 224 |
| BstC8I | GCNNGC | 3 cut(s) | 204, 407, 423 |
| BstDEI | CTNAG | 5 cut(s) | 450, 630, 653, 756, 794 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstF5I | GGATG | 2 cut(s) | 60, 442 |
| BstFNI | CGCG | 1 cut(s) | 200 |
| BstHHI | GCGC | 1 cut(s) | 202 |
| BstKTI | GATC | 8 cut(s) | 44, 78, 86, 139, 363, 470, 693, 755 |
| BstMAI | GTCTC | 1 cut(s) | 95 |
| BstMBI | GATC | 8 cut(s) | 41, 75, 83, 136, 360, 467, 690, 752 |
| BstMCI | CGRYCG | 1 cut(s) | 198 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 197, 411, 520 |
| BstNI | CCWGG | 1 cut(s) | 569 |
| BstNSI | RCATGY | 2 cut(s) | 210, 485 |
| BstSCI | CCNGG | 3 cut(s) | 192, 523, 567 |
| BstSLI | GKGCMC | 1 cut(s) | 172 |
| BstUI | CGCG | 1 cut(s) | 200 |
| BstV1I | GCAGC | 3 cut(s) | 532, 573, 576 |
| BstX2I | RGATCY | 1 cut(s) | 83 |
| BstYI | RGATCY | 1 cut(s) | 83 |
| Bsu15I | ATCGAT | 1 cut(s) | 363 |
| BsuRI | GGCC | 4 cut(s) | 111, 239, 383, 421 |
| BsuTUI | ATCGAT | 1 cut(s) | 363 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtsCI | GGATG | 2 cut(s) | 60, 442 |
| BtsI | GCAGTG | 2 cut(s) | 18, 281 |
| BtsIMutI | CAGTG | 2 cut(s) | 18, 281 |
| Cac8I | GCNNGC | 3 cut(s) | 204, 407, 423 |
| CfoI | GCGC | 1 cut(s) | 202 |
| Cfr10I | RCCGGY | 1 cut(s) | 421 |
| Cfr13I | GGNCC | 2 cut(s) | 238, 419 |
| ClaI | ATCGAT | 1 cut(s) | 363 |
| CseI | GACGC | 1 cut(s) | 232 |
| Csp6I | GTAC | 2 cut(s) | 31, 181 |
| CviAII | CATG | 6 cut(s) | 69, 188, 207, 299, 482, 596 |
| CviQI | GTAC | 2 cut(s) | 31, 181 |
| DdeI | CTNAG | 5 cut(s) | 450, 630, 653, 756, 794 |
| DpnI | GATC | 8 cut(s) | 43, 77, 85, 138, 362, 469, 692, 754 |
| DpnII | GATC | 8 cut(s) | 41, 75, 83, 136, 360, 467, 690, 752 |
| EaeI | YGGCCR | 1 cut(s) | 109 |
| Eco130I | CCWWGG | 1 cut(s) | 49 |
| Eco57I | CTGAAG | 2 cut(s) | 516, 686 |
| Eco88I | CYCGRG | 2 cut(s) | 24, 415 |
| EcoRII | CCWGG | 1 cut(s) | 567 |
| EcoT14I | CCWWGG | 1 cut(s) | 49 |
| EcoT22I | ATGCAT | 1 cut(s) | 70 |
| ErhI | CCWWGG | 1 cut(s) | 49 |
| FaeI | CATG | 6 cut(s) | 72, 191, 210, 302, 485, 599 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 782 |
| FaqI | GGGAC | 1 cut(s) | 562 |
| FatI | CATG | 6 cut(s) | 68, 187, 206, 298, 481, 595 |
| FbaI | TGATCA | 1 cut(s) | 690 |
| Fnu4HI | GCNGC | 3 cut(s) | 521, 562, 565 |
| FokI | GGATG | 2 cut(s) | 67, 449 |
| Fsp4HI | GCNGC | 3 cut(s) | 521, 562, 565 |
| FspBI | CTAG | 4 cut(s) | 582, 608, 635, 811 |
| GlaI | GCGC | 1 cut(s) | 201 |
| GluI | GCNGC | 3 cut(s) | 521, 562, 565 |
| HaeIII | GGCC | 4 cut(s) | 111, 239, 383, 421 |
| HapII | CCGG | 5 cut(s) | 194, 384, 422, 524, 722 |
| HgaI | GACGC | 1 cut(s) | 232 |
| HhaI | GCGC | 1 cut(s) | 202 |
| Hin1I | GRCGYC | 1 cut(s) | 224 |
| Hin1II | CATG | 6 cut(s) | 72, 191, 210, 302, 485, 599 |
| Hin6I | GCGC | 1 cut(s) | 200 |
| HinP1I | GCGC | 1 cut(s) | 200 |
| HindIII | AAGCTT | 2 cut(s) | 698, 791 |
| HpaII | CCGG | 5 cut(s) | 194, 384, 422, 524, 722 |
| HphI | GGTGA | 1 cut(s) | 700 |
| Hpy166II | GTNNAC | 1 cut(s) | 740 |
| Hpy188I | TCNGA | 7 cut(s) | 136, 145, 313, 654, 695, 717, 757 |
| Hpy188III | TCNNGA | 5 cut(s) | 26, 160, 356, 664, 704 |
| Hpy8I | GTNNAC | 1 cut(s) | 740 |
| HpyAV | CCTTC | 5 cut(s) | 55, 150, 157, 373, 670 |
| HpyCH4III | ACNGT | 1 cut(s) | 460 |
| HpyCH4V | TGCA | 7 cut(s) | 63, 68, 286, 479, 485, 514, 520 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 197, 411, 520 |
| HpyF3I | CTNAG | 5 cut(s) | 450, 630, 653, 756, 794 |
| Hsp92I | GRCGYC | 1 cut(s) | 224 |
| Hsp92II | CATG | 6 cut(s) | 72, 191, 210, 302, 485, 599 |
| HspAI | GCGC | 1 cut(s) | 200 |
| KroI | GCCGGC | 1 cut(s) | 421 |
| KroNI | GCCGGC | 1 cut(s) | 423 |
| Ksp22I | TGATCA | 1 cut(s) | 690 |
| Kzo9I | GATC | 8 cut(s) | 41, 75, 83, 136, 360, 467, 690, 752 |
| LmnI | GCTCC | 1 cut(s) | 527 |
| Lsp1109I | GCAGC | 3 cut(s) | 532, 573, 576 |
| LweI | GCATC | 1 cut(s) | 507 |
| MaeI | CTAG | 4 cut(s) | 582, 608, 635, 811 |
| MaeIII | GTNAC | 2 cut(s) | 220, 766 |
| MalI | GATC | 8 cut(s) | 43, 77, 85, 138, 362, 469, 692, 754 |
| MboI | GATC | 8 cut(s) | 41, 75, 83, 136, 360, 467, 690, 752 |
| MboII | GAAGA | 1 cut(s) | 388 |
| MflI | RGATCY | 1 cut(s) | 83 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MluCI | AATT | 2 cut(s) | 247, 729 |
| MmeI | TCCRAC | 1 cut(s) | 408 |
| Mph1103I | ATGCAT | 1 cut(s) | 70 |
| MroNI | GCCGGC | 1 cut(s) | 421 |
| MseI | TTAA | 1 cut(s) | 615 |
| MspI | CCGG | 5 cut(s) | 194, 384, 422, 524, 722 |
| MspR9I | CCNGG | 3 cut(s) | 194, 525, 569 |
| Mva1269I | GAATGC | 1 cut(s) | 583 |
| MvaI | CCWGG | 1 cut(s) | 569 |
| MvnI | CGCG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 197, 411, 520 |
| NaeI | GCCGGC | 1 cut(s) | 423 |
| NciI | CCSGG | 2 cut(s) | 194, 525 |
| NdeII | GATC | 8 cut(s) | 41, 75, 83, 136, 360, 467, 690, 752 |
| NgoMIV | GCCGGC | 1 cut(s) | 421 |
| NlaIII | CATG | 6 cut(s) | 72, 191, 210, 302, 485, 599 |
| NlaIV | GGNNCC | 4 cut(s) | 85, 169, 420, 645 |
| NmeAIII | GCCGAG | 1 cut(s) | 655 |
| NmuCI | GTSAC | 2 cut(s) | 220, 766 |
| NsiI | ATGCAT | 1 cut(s) | 70 |
| NspI | RCATGY | 2 cut(s) | 210, 485 |
| PaeR7I | CTCGAG | 1 cut(s) | 24 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 422, 748 |
| PctI | GAATGC | 1 cut(s) | 583 |
| PdiI | GCCGGC | 1 cut(s) | 423 |
| PkrI | GCNGC | 3 cut(s) | 522, 563, 566 |
| Psp6I | CCWGG | 1 cut(s) | 567 |
| PspGI | CCWGG | 1 cut(s) | 567 |
| PspN4I | GGNNCC | 4 cut(s) | 85, 169, 420, 645 |
| PspPI | GGNCC | 2 cut(s) | 238, 419 |
| PsuI | RGATCY | 1 cut(s) | 83 |
| RsaI | GTAC | 2 cut(s) | 32, 182 |
| RsaNI | GTAC | 2 cut(s) | 31, 181 |
| SaqAI | TTAA | 1 cut(s) | 615 |
| SatI | GCNGC | 3 cut(s) | 521, 562, 565 |
| Sau3AI | GATC | 8 cut(s) | 41, 75, 83, 136, 360, 467, 690, 752 |
| Sau96I | GGNCC | 2 cut(s) | 238, 419 |
| ScrFI | CCNGG | 3 cut(s) | 194, 525, 569 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SfaNI | GCATC | 1 cut(s) | 507 |
| Sfr274I | CTCGAG | 1 cut(s) | 24 |
| SlaI | CTCGAG | 1 cut(s) | 24 |
| SmlI | CTYRAG | 1 cut(s) | 24 |
| SmoI | CTYRAG | 1 cut(s) | 24 |
| Sse9I | AATT | 2 cut(s) | 247, 729 |
| SsiI | CCGC | 1 cut(s) | 488 |
| SspMI | CTAG | 4 cut(s) | 582, 608, 635, 811 |
| StyD4I | CCNGG | 3 cut(s) | 192, 523, 567 |
| StyI | CCWWGG | 1 cut(s) | 49 |
| TaaI | ACNGT | 1 cut(s) | 460 |
| TaqI | TCGA | 4 cut(s) | 25, 363, 539, 751 |
| TaqII | GACCGA | 1 cut(s) | 297 |
| TasI | AATT | 2 cut(s) | 247, 729 |
| TatI | WGTACW | 1 cut(s) | 30 |
| Tru1I | TTAA | 1 cut(s) | 615 |
| Tru9I | TTAA | 1 cut(s) | 615 |
| TscAI | CASTG | 2 cut(s) | 25, 288 |
| TseFI | GTSAC | 2 cut(s) | 220, 766 |
| TseI | GCWGC | 3 cut(s) | 520, 561, 564 |
| Tsp45I | GTSAC | 2 cut(s) | 220, 766 |
| TspDTI | ATGAA | 3 cut(s) | 115, 143, 584 |
| TspGWI | ACGGA | 1 cut(s) | 757 |
| TspRI | CASTG | 2 cut(s) | 25, 288 |
| XapI | RAATTY | 1 cut(s) | 247 |
| XceI | RCATGY | 2 cut(s) | 210, 485 |
| XhoI | CTCGAG | 1 cut(s) | 24 |
| XspI | CTAG | 4 cut(s) | 582, 608, 635, 811 |
| Zsp2I | ATGCAT | 1 cut(s) | 70 |