Rmu_co8364775.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8364775.1
OG0000187
Physical Location & Seq
Reverse (-)
34 .. 1006
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8364775.1_g000001.1.cds

Sequence Viewer

Length: 876 bp
atggctctagctttgtatgatggtatcatgccggtggagaaagtgcccctagccatggcatcatattggataactcttcagggaataccaccagcgtttcggtctgaacgtgtcatgaccatgatccgctacacgctgggggattttcaggaaattgataagaatgctaagaagactgggaaactccggattacggttgagatacctttgaataaaccattgcctttcaagcggtggtacttggtggaagatgcggtcgagttttgctgtcaattccgttatgacaagcttttcggaagatgctctgtatgtgcattagtcacacatgtgggtttgccatgctccggacaggcgctggatgaagacgatgatgaagccgagagaattgttttggggtcccagaccacggtgtcagagatgaacggtgggggctcgccgggagtttgggcggggtcaacttcggggcatgctagtggtagtgggttcactactggtgtaagagctagggttagcaccccgtgtccaccgttggggacaacggaaactccagaacgtatcactggcaagcgtcgagacagagaagacagcctgactatctcccctaagaaactgaaattgagtttggcagtaggtaagagcaatctcattcttgattctgaaaagcttggcctggaccctatacaggaggagactcattctgcgagtatgaagaggaagcgaggacgaccttctggcagtagaaataagtcgtcgtctagtggcaagcagcaaacctcaaagcatggtgagggtaaggagaagaataagtctccaacaatgaagcagtcggtggggaaacactccaacccgaaagggaaggagttggctcttttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

291

Amino Acids

31.77

Weight (kDa)

9.43

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 409
AccIII TCCGGA 2 cut(s) 186, 344
AciI CCGC 4 cut(s) 127, 232, 254, 449
AclWI GGATC 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 62
AdeI CACNNNGTG 1 cut(s) 519
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 6 cut(s) 55, 193, 344, 406, 530, 682
AflIII ACRYGT 2 cut(s) 109, 325
AgsI TTSAA 2 cut(s) 211, 229
AjnI CCWGG 1 cut(s) 669
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 4 cut(s) 11, 289, 503, 664
AluI AGCT 4 cut(s) 11, 289, 503, 664
Alw26I GTCTC 3 cut(s) 567, 683, 813
AlwI GGATC 1 cut(s) 118
AlwNI CAGNNNCTG 1 cut(s) 355
Aor13HI TCCGGA 2 cut(s) 186, 344
AoxI GGCC 1 cut(s) 667
ApeKI GCWGC 1 cut(s) 766
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 396, 673
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 797
AvaII GGWCC 2 cut(s) 396, 673
BaeGI GKGCMC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 434
BbsI GAAGAC 3 cut(s) 179, 369, 588
BbvI GCAGC 1 cut(s) 778
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 671
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 3 cut(s) 567, 683, 813
BfaI CTAG 5 cut(s) 8, 50, 471, 504, 756
BfoI RGCGCY 1 cut(s) 356
BisI GCNGC 1 cut(s) 767
BlsI GCNGC 1 cut(s) 768
Bme1390I CCNGG 2 cut(s) 438, 671
Bme18I GGWCC 2 cut(s) 396, 673
BmgT120I GGNCC 2 cut(s) 396, 673
BmiI GGNNCC 3 cut(s) 397, 398, 675
BmrFI CCNGG 2 cut(s) 438, 671
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 3 cut(s) 68, 241, 290
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 3 cut(s) 179, 369, 588
BpmI CTGGAG 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 54, 405
BsaWI WCCGGW 2 cut(s) 186, 344
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 193, 344, 406, 530, 682
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 3 cut(s) 181, 496, 565
Bse3DI GCAATG 1 cut(s) 218
BseAI TCCGGA 2 cut(s) 186, 344
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 2 cut(s) 54, 405
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 6 cut(s) 55, 193, 344, 406, 530, 682
BseMI GCAATG 1 cut(s) 218
BseNI ACTGG 3 cut(s) 181, 496, 565
BseRI GAGGAG 1 cut(s) 701
BseSI GKGCMC 1 cut(s) 48
BseXI GCAGC 1 cut(s) 778
BseYI CCCAGC 1 cut(s) 136
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 669
BsiEI CGRYCG 1 cut(s) 258
BsiSI CCGG 4 cut(s) 32, 187, 345, 437
BslFI GGGAC 2 cut(s) 382, 547
BslI CCNNNNNNNGG 6 cut(s) 55, 193, 344, 406, 530, 682
BsmAI GTCTC 3 cut(s) 567, 683, 813
BsmFI GGGAC 2 cut(s) 382, 547
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 669
Bsp1286I GDGCHC 2 cut(s) 48, 434
Bsp13I TCCGGA 2 cut(s) 186, 344
Bsp143I GATC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 4 cut(s) 127, 232, 254, 449
BspANI GGCC 1 cut(s) 669
BspEI TCCGGA 2 cut(s) 186, 344
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 397, 398, 675
BspPI GGATC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 3 cut(s) 181, 496, 565
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 54, 405
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 4 cut(s) 196, 409, 425, 528
Bst6I CTCTTC 2 cut(s) 81, 704
BstC8I GCNNGC 4 cut(s) 434, 468, 566, 764
BstDEI CTNAG 2 cut(s) 168, 603
BstDSI CCRYGG 2 cut(s) 54, 405
BstF5I GGATG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 3 cut(s) 567, 683, 813
BstMBI GATC 1 cut(s) 123
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 2 cut(s) 329, 470
BstSCI CCNGG 2 cut(s) 436, 669
BstSLI GKGCMC 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 778
BstV2I GAAGAC 3 cut(s) 179, 369, 588
BsuRI GGCC 1 cut(s) 669
BtgI CCRYGG 2 cut(s) 54, 405
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 4 cut(s) 434, 468, 566, 764
CaiI CAGNNNCTG 1 cut(s) 355
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 396, 673
CseI GACGC 1 cut(s) 557
Csp6I GTAC 1 cut(s) 238
CviAII CATG 8 cut(s) 28, 55, 115, 121, 326, 339, 467, 782
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 2 cut(s) 168, 603
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 519
DrdI GACNNNNNNGTC 1 cut(s) 409
DseDI GACNNNNNNGTC 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 81, 704
EarI CTCTTC 2 cut(s) 81, 704
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 396, 673
Eco57I CTGAAG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 8 cut(s) 31, 58, 118, 124, 329, 342, 470, 785
FaqI GGGAC 2 cut(s) 382, 547
FatI CATG 8 cut(s) 27, 54, 114, 120, 325, 338, 466, 781
FauI CCCGC 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 767
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 1 cut(s) 767
FspBI CTAG 5 cut(s) 8, 50, 471, 504, 756
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 767
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 1 cut(s) 669
HapII CCGG 4 cut(s) 32, 187, 345, 437
HgaI GACGC 1 cut(s) 557
HhaI GCGC 1 cut(s) 355
Hin1II CATG 8 cut(s) 31, 58, 118, 124, 329, 342, 470, 785
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HindIII AAGCTT 2 cut(s) 287, 662
HinfI GANTC 2 cut(s) 653, 691
HpaII CCGG 4 cut(s) 32, 187, 345, 437
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 3 cut(s) 456, 486, 524
Hpy188I TCNGA 4 cut(s) 106, 296, 415, 658
Hpy188III TCNNGA 7 cut(s) 115, 149, 187, 345, 548, 572, 650
Hpy8I GTNNAC 3 cut(s) 456, 486, 524
Hpy99I CGWCG 2 cut(s) 573, 754
HpyAV CCTTC 2 cut(s) 738, 850
HpyCH4III ACNGT 4 cut(s) 196, 409, 425, 528
HpyCH4IV ACGT 2 cut(s) 109, 553
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 168, 603
HpySE526I ACGT 2 cut(s) 109, 553
Hsp92II CATG 8 cut(s) 31, 58, 118, 124, 329, 342, 470, 785
HspAI GCGC 1 cut(s) 353
KflI GGGWCCC 1 cut(s) 396
Kpn2I TCCGGA 2 cut(s) 186, 344
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 3 cut(s) 68, 241, 290
MaeI CTAG 5 cut(s) 8, 50, 471, 504, 756
MaeII ACGT 2 cut(s) 109, 553
MaeIII GTNAC 1 cut(s) 319
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 8 cut(s) 68, 184, 260, 309, 374, 593, 721, 811
MhlI GDGCHC 2 cut(s) 48, 434
MluCI AATT 4 cut(s) 153, 272, 384, 614
MlyI GAGTC 1 cut(s) 685
MmeI TCCRAC 2 cut(s) 836, 867
MnlI CCTC 5 cut(s) 679, 705, 713, 781, 784
MroI TCCGGA 2 cut(s) 186, 344
MslI CAYNNNNRTG 4 cut(s) 32, 119, 326, 471
MspI CCGG 4 cut(s) 32, 187, 345, 437
MspR9I CCNGG 2 cut(s) 438, 671
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 671
MwoI GCNNNNNNNGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 438
NcoI CCATGG 1 cut(s) 54
NdeII GATC 1 cut(s) 123
NlaIII CATG 8 cut(s) 31, 58, 118, 124, 329, 342, 470, 785
NlaIV GGNNCC 3 cut(s) 397, 398, 675
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 2 cut(s) 329, 470
OliI CACNNNNGTG 1 cut(s) 326
PaeI GCATGC 1 cut(s) 470
PagI TCATGA 1 cut(s) 114
PciI ACATGT 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 653
PkrI GCNGC 1 cut(s) 768
PleI GAGTC 1 cut(s) 685
PpsI GAGTC 1 cut(s) 685
PpuMI RGGWCCY 1 cut(s) 396
PscI ACATGT 1 cut(s) 325
Psp5II RGGWCCY 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 3 cut(s) 397, 398, 675
PspPI GGNCC 2 cut(s) 396, 673
PspPPI RGGWCCY 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 355
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 4 cut(s) 32, 119, 326, 471
SatI GCNGC 1 cut(s) 767
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 396, 673
SchI GAGTC 1 cut(s) 685
ScrFI CCNGG 2 cut(s) 438, 671
SduI GDGCHC 2 cut(s) 48, 434
SfaNI GCATC 3 cut(s) 68, 241, 290
SinI GGWCC 2 cut(s) 396, 673
SmiMI CAYNNNNRTG 4 cut(s) 32, 119, 326, 471
SphI GCATGC 1 cut(s) 470
Sse9I AATT 4 cut(s) 153, 272, 384, 614
SsiI CCGC 4 cut(s) 127, 232, 254, 449
SspMI CTAG 5 cut(s) 8, 50, 471, 504, 756
StyD4I CCNGG 2 cut(s) 436, 669
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 4 cut(s) 196, 409, 425, 528
TaiI ACGT 2 cut(s) 112, 556
TaqI TCGA 2 cut(s) 258, 571
TaqII GACCGA 1 cut(s) 90
TasI AATT 4 cut(s) 153, 272, 384, 614
TfiI GAWTC 1 cut(s) 653
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 5 cut(s) 375, 387, 434, 722, 833
TspGWI ACGGA 2 cut(s) 266, 554
TspRI CASTG 1 cut(s) 565
VpaK11BI GGWCC 2 cut(s) 396, 673
XceI RCATGY 2 cut(s) 329, 470
XspI CTAG 5 cut(s) 8, 50, 471, 504, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.