ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 328 |
| Acc36I | ACCTGC | 2 cut(s) | 328, 541 |
| AccB1I | GGYRCC | 1 cut(s) | 271 |
| AciI | CCGC | 1 cut(s) | 916 |
| AclWI | GGATC | 5 cut(s) | 164, 177, 305, 566, 670 |
| AcsI | RAATTY | 1 cut(s) | 395 |
| AfaI | GTAC | 1 cut(s) | 890 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 187, 294, 467 |
| AgsI | TTSAA | 8 cut(s) | 131, 140, 354, 481, 571, 634, 655, 952 |
| AjiI | CACGTC | 1 cut(s) | 725 |
| AjnI | CCWGG | 1 cut(s) | 205 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 260, 292 |
| AluBI | AGCT | 4 cut(s) | 412, 608, 975, 997 |
| AluI | AGCT | 4 cut(s) | 412, 608, 975, 997 |
| Alw21I | GWGCWC | 3 cut(s) | 205, 226, 467 |
| Alw26I | GTCTC | 1 cut(s) | 558 |
| AlwI | GGATC | 5 cut(s) | 164, 177, 305, 566, 670 |
| Ama87I | CYCGRG | 1 cut(s) | 466 |
| AoxI | GGCC | 2 cut(s) | 339, 470 |
| ApeKI | GCWGC | 4 cut(s) | 23, 121, 457, 605 |
| ApoI | RAATTY | 1 cut(s) | 395 |
| AspA2I | CCTAGG | 2 cut(s) | 620, 668 |
| AspLEI | GCGC | 1 cut(s) | 507 |
| AspS9I | GGNCC | 2 cut(s) | 339, 470 |
| AsuC2I | CCSGG | 2 cut(s) | 182, 680 |
| AsuHPI | GGTGA | 2 cut(s) | 292, 829 |
| AvaI | CYCGRG | 1 cut(s) | 466 |
| AvrII | CCTAGG | 2 cut(s) | 620, 668 |
| BamHI | GGATCC | 1 cut(s) | 169 |
| BanI | GGYRCC | 1 cut(s) | 271 |
| BbsI | GAAGAC | 1 cut(s) | 378 |
| Bbv12I | GWGCWC | 3 cut(s) | 205, 226, 467 |
| BbvI | GCAGC | 4 cut(s) | 10, 108, 444, 617 |
| BccI | CCATC | 4 cut(s) | 242, 352, 871, 896 |
| BceAI | ACGGC | 1 cut(s) | 445 |
| BciT130I | CCWGG | 1 cut(s) | 207 |
| BclI | TGATCA | 2 cut(s) | 441, 805 |
| BcnI | CCSGG | 2 cut(s) | 182, 680 |
| BcoDI | GTCTC | 1 cut(s) | 558 |
| BfaI | CTAG | 4 cut(s) | 621, 669, 839, 998 |
| BfmI | CTRYAG | 2 cut(s) | 174, 305 |
| BfuAI | ACCTGC | 2 cut(s) | 328, 541 |
| BglII | AGATCT | 2 cut(s) | 73, 96 |
| BisI | GCNGC | 4 cut(s) | 24, 122, 458, 606 |
| BlnI | CCTAGG | 2 cut(s) | 620, 668 |
| BlsI | GCNGC | 4 cut(s) | 25, 123, 459, 607 |
| BmcAI | AGTACT | 1 cut(s) | 890 |
| Bme1390I | CCNGG | 3 cut(s) | 182, 207, 680 |
| BmeT110I | CYCGRG | 1 cut(s) | 466 |
| BmgBI | CACGTC | 1 cut(s) | 725 |
| BmgT120I | GGNCC | 2 cut(s) | 339, 470 |
| BmiI | GGNNCC | 3 cut(s) | 171, 273, 471 |
| BmrFI | CCNGG | 3 cut(s) | 182, 207, 680 |
| BmrI | ACTGGG | 1 cut(s) | 918 |
| BmsI | GCATC | 1 cut(s) | 4 |
| BmuI | ACTGGG | 1 cut(s) | 918 |
| BpiI | GAAGAC | 1 cut(s) | 378 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 187, 219 |
| BpmI | CTGGAG | 1 cut(s) | 189 |
| BpuMI | CCSGG | 2 cut(s) | 182, 680 |
| BsaJI | CCNNGG | 6 cut(s) | 18, 206, 228, 620, 668, 873 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 135, 165, 374, 404, 601, 631 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 187, 294, 467 |
| Bse118I | RCCGGY | 1 cut(s) | 472 |
| Bse1I | ACTGG | 2 cut(s) | 54, 913 |
| BseBI | CCWGG | 1 cut(s) | 207 |
| BseDI | CCNNGG | 6 cut(s) | 18, 206, 228, 620, 668, 873 |
| BseGI | GGATG | 1 cut(s) | 678 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 187, 294, 467 |
| BseMII | CTCAG | 1 cut(s) | 750 |
| BseNI | ACTGG | 2 cut(s) | 54, 913 |
| BseXI | GCAGC | 4 cut(s) | 10, 108, 444, 617 |
| BshFI | GGCC | 2 cut(s) | 341, 472 |
| BshNI | GGYRCC | 1 cut(s) | 271 |
| BsiHKAI | GWGCWC | 3 cut(s) | 205, 226, 467 |
| BsiHKCI | CYCGRG | 1 cut(s) | 466 |
| BsiSI | CCGG | 3 cut(s) | 181, 473, 680 |
| BslFI | GGGAC | 1 cut(s) | 130 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 187, 294, 467 |
| BsmAI | GTCTC | 1 cut(s) | 558 |
| BsmFI | GGGAC | 1 cut(s) | 130 |
| BsnI | GGCC | 2 cut(s) | 341, 472 |
| BsoBI | CYCGRG | 1 cut(s) | 466 |
| Bsp1286I | GDGCHC | 3 cut(s) | 205, 226, 467 |
| Bsp143I | GATC | 9 cut(s) | 73, 96, 169, 297, 441, 558, 648, 675, 805 |
| Bsp19I | CCATGG | 1 cut(s) | 18 |
| BspACI | CCGC | 1 cut(s) | 916 |
| BspANI | GGCC | 2 cut(s) | 341, 472 |
| BspCNI | CTCAG | 1 cut(s) | 751 |
| BspLI | GGNNCC | 3 cut(s) | 171, 273, 471 |
| BspMAI | CTGCAG | 1 cut(s) | 309 |
| BspMI | ACCTGC | 2 cut(s) | 328, 541 |
| BspPI | GGATC | 5 cut(s) | 164, 177, 305, 566, 670 |
| BspT107I | GGYRCC | 1 cut(s) | 271 |
| BsrFI | RCCGGY | 1 cut(s) | 472 |
| BsrI | ACTGG | 2 cut(s) | 54, 913 |
| BssAI | RCCGGY | 1 cut(s) | 472 |
| BssECI | CCNNGG | 6 cut(s) | 18, 206, 228, 620, 668, 873 |
| BssMI | GATC | 9 cut(s) | 73, 96, 169, 297, 441, 558, 648, 675, 805 |
| BssT1I | CCWWGG | 4 cut(s) | 18, 228, 620, 668 |
| Bst2UI | CCWGG | 1 cut(s) | 207 |
| Bst4CI | ACNGT | 3 cut(s) | 221, 379, 529 |
| Bst6I | CTCTTC | 2 cut(s) | 821, 926 |
| BstC8I | GCNNGC | 1 cut(s) | 474 |
| BstDEI | CTNAG | 2 cut(s) | 759, 798 |
| BstDSI | CCRYGG | 2 cut(s) | 18, 873 |
| BstF5I | GGATG | 1 cut(s) | 678 |
| BstHHI | GCGC | 1 cut(s) | 507 |
| BstKTI | GATC | 9 cut(s) | 76, 99, 172, 300, 444, 561, 651, 678, 808 |
| BstMAI | GTCTC | 1 cut(s) | 558 |
| BstMBI | GATC | 9 cut(s) | 73, 96, 169, 297, 441, 558, 648, 675, 805 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 23, 32, 230, 792 |
| BstNI | CCWGG | 1 cut(s) | 207 |
| BstSCI | CCNGG | 3 cut(s) | 180, 205, 678 |
| BstSFI | CTRYAG | 2 cut(s) | 174, 305 |
| BstV1I | GCAGC | 4 cut(s) | 10, 108, 444, 617 |
| BstV2I | GAAGAC | 1 cut(s) | 378 |
| BstX2I | RGATCY | 3 cut(s) | 73, 96, 169 |
| BstYI | RGATCY | 3 cut(s) | 73, 96, 169 |
| BsuRI | GGCC | 2 cut(s) | 341, 472 |
| BtgI | CCRYGG | 2 cut(s) | 18, 873 |
| BtrI | CACGTC | 1 cut(s) | 725 |
| BtsCI | GGATG | 1 cut(s) | 678 |
| BtsI | GCAGTG | 1 cut(s) | 302 |
| BtsIMutI | CAGTG | 3 cut(s) | 47, 302, 906 |
| BveI | ACCTGC | 2 cut(s) | 328, 541 |
| Cac8I | GCNNGC | 1 cut(s) | 474 |
| CfoI | GCGC | 1 cut(s) | 507 |
| Cfr10I | RCCGGY | 1 cut(s) | 472 |
| Cfr13I | GGNCC | 2 cut(s) | 339, 470 |
| CseI | GACGC | 1 cut(s) | 127 |
| Csp6I | GTAC | 1 cut(s) | 889 |
| CviAII | CATG | 4 cut(s) | 19, 449, 547, 814 |
| CviQI | GTAC | 1 cut(s) | 889 |
| DdeI | CTNAG | 2 cut(s) | 759, 798 |
| DpnI | GATC | 9 cut(s) | 75, 98, 171, 299, 443, 560, 650, 677, 807 |
| DpnII | GATC | 9 cut(s) | 73, 96, 169, 297, 441, 558, 648, 675, 805 |
| Eam1104I | CTCTTC | 2 cut(s) | 821, 926 |
| EarI | CTCTTC | 2 cut(s) | 821, 926 |
| Eco130I | CCWWGG | 4 cut(s) | 18, 228, 620, 668 |
| Eco88I | CYCGRG | 1 cut(s) | 466 |
| EcoRII | CCWGG | 1 cut(s) | 205 |
| EcoT14I | CCWWGG | 4 cut(s) | 18, 228, 620, 668 |
| ErhI | CCWWGG | 4 cut(s) | 18, 228, 620, 668 |
| FaeI | CATG | 4 cut(s) | 22, 452, 550, 817 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 86, 118 |
| FaqI | GGGAC | 1 cut(s) | 130 |
| FatI | CATG | 4 cut(s) | 18, 448, 546, 813 |
| FbaI | TGATCA | 2 cut(s) | 441, 805 |
| Fnu4HI | GCNGC | 4 cut(s) | 24, 122, 458, 606 |
| FokI | GGATG | 1 cut(s) | 685 |
| Fsp4HI | GCNGC | 4 cut(s) | 24, 122, 458, 606 |
| FspBI | CTAG | 4 cut(s) | 621, 669, 839, 998 |
| GlaI | GCGC | 1 cut(s) | 506 |
| GluI | GCNGC | 4 cut(s) | 24, 122, 458, 606 |
| GsuI | CTGGAG | 1 cut(s) | 189 |
| HaeIII | GGCC | 2 cut(s) | 341, 472 |
| HapII | CCGG | 3 cut(s) | 181, 473, 680 |
| HgaI | GACGC | 1 cut(s) | 127 |
| HhaI | GCGC | 1 cut(s) | 507 |
| Hin1II | CATG | 4 cut(s) | 22, 452, 550, 817 |
| Hin6I | GCGC | 1 cut(s) | 505 |
| HinP1I | GCGC | 1 cut(s) | 505 |
| HincII | GTYRAC | 1 cut(s) | 942 |
| HindII | GTYRAC | 1 cut(s) | 942 |
| HinfI | GANTC | 5 cut(s) | 30, 658, 755, 773, 934 |
| HpaII | CCGG | 3 cut(s) | 181, 473, 680 |
| HphI | GGTGA | 2 cut(s) | 292, 829 |
| Hpy166II | GTNNAC | 3 cut(s) | 159, 615, 942 |
| Hpy188I | TCNGA | 4 cut(s) | 169, 563, 760, 984 |
| Hpy188III | TCNNGA | 2 cut(s) | 556, 655 |
| Hpy8I | GTNNAC | 3 cut(s) | 159, 615, 942 |
| Hpy99I | CGWCG | 1 cut(s) | 529 |
| HpyAV | CCTTC | 5 cut(s) | 46, 61, 134, 262, 584 |
| HpyCH4III | ACNGT | 3 cut(s) | 221, 379, 529 |
| HpyCH4IV | ACGT | 2 cut(s) | 611, 724 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 23, 32, 230, 792 |
| HpyF3I | CTNAG | 2 cut(s) | 759, 798 |
| HpySE526I | ACGT | 2 cut(s) | 611, 724 |
| Hsp92II | CATG | 4 cut(s) | 22, 452, 550, 817 |
| HspAI | GCGC | 1 cut(s) | 505 |
| KroI | GCCGGC | 1 cut(s) | 472 |
| KroNI | GCCGGC | 1 cut(s) | 474 |
| Ksp22I | TGATCA | 2 cut(s) | 441, 805 |
| Kzo9I | GATC | 9 cut(s) | 73, 96, 169, 297, 441, 558, 648, 675, 805 |
| LmnI | GCTCC | 4 cut(s) | 208, 229, 532, 994 |
| Lsp1109I | GCAGC | 4 cut(s) | 10, 108, 444, 617 |
| LweI | GCATC | 1 cut(s) | 4 |
| MaeI | CTAG | 4 cut(s) | 621, 669, 839, 998 |
| MaeII | ACGT | 2 cut(s) | 611, 724 |
| MalI | GATC | 9 cut(s) | 75, 98, 171, 299, 443, 560, 650, 677, 807 |
| MboI | GATC | 9 cut(s) | 73, 96, 169, 297, 441, 558, 648, 675, 805 |
| MfeI | CAATTG | 1 cut(s) | 261 |
| MflI | RGATCY | 3 cut(s) | 73, 96, 169 |
| MhlI | GDGCHC | 3 cut(s) | 205, 226, 467 |
| MluCI | AATT | 2 cut(s) | 261, 395 |
| MlyI | GAGTC | 5 cut(s) | 24, 652, 764, 782, 943 |
| MnlI | CCTC | 9 cut(s) | 49, 100, 137, 189, 298, 414, 824, 828, 912 |
| MroNI | GCCGGC | 1 cut(s) | 472 |
| MseI | TTAA | 1 cut(s) | 216 |
| MspI | CCGG | 3 cut(s) | 181, 473, 680 |
| MspR9I | CCNGG | 3 cut(s) | 182, 207, 680 |
| MunI | CAATTG | 1 cut(s) | 261 |
| MvaI | CCWGG | 1 cut(s) | 207 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 23, 32, 230, 792 |
| NaeI | GCCGGC | 1 cut(s) | 474 |
| NciI | CCSGG | 2 cut(s) | 182, 680 |
| NcoI | CCATGG | 1 cut(s) | 18 |
| NdeII | GATC | 9 cut(s) | 73, 96, 169, 297, 441, 558, 648, 675, 805 |
| NgoMIV | GCCGGC | 1 cut(s) | 472 |
| NlaIII | CATG | 4 cut(s) | 22, 452, 550, 817 |
| NlaIV | GGNNCC | 3 cut(s) | 171, 273, 471 |
| PaqCI | CACCTGC | 1 cut(s) | 328 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 473 |
| PdiI | GCCGGC | 1 cut(s) | 474 |
| PfoI | TCCNGGA | 1 cut(s) | 678 |
| PkrI | GCNGC | 4 cut(s) | 25, 123, 459, 607 |
| PleI | GAGTC | 5 cut(s) | 24, 652, 763, 781, 942 |
| PpsI | GAGTC | 5 cut(s) | 24, 652, 763, 781, 942 |
| Psp6I | CCWGG | 1 cut(s) | 205 |
| PspGI | CCWGG | 1 cut(s) | 205 |
| PspN4I | GGNNCC | 3 cut(s) | 171, 273, 471 |
| PspPI | GGNCC | 2 cut(s) | 339, 470 |
| PstI | CTGCAG | 1 cut(s) | 309 |
| PsuI | RGATCY | 3 cut(s) | 73, 96, 169 |
| RsaI | GTAC | 1 cut(s) | 890 |
| RsaNI | GTAC | 1 cut(s) | 889 |
| SaqAI | TTAA | 1 cut(s) | 216 |
| SatI | GCNGC | 4 cut(s) | 24, 122, 458, 606 |
| Sau3AI | GATC | 9 cut(s) | 73, 96, 169, 297, 441, 558, 648, 675, 805 |
| Sau96I | GGNCC | 2 cut(s) | 339, 470 |
| ScaI | AGTACT | 1 cut(s) | 890 |
| SchI | GAGTC | 5 cut(s) | 24, 652, 764, 782, 943 |
| ScrFI | CCNGG | 3 cut(s) | 182, 207, 680 |
| SduI | GDGCHC | 3 cut(s) | 205, 226, 467 |
| SfaNI | GCATC | 1 cut(s) | 4 |
| SfcI | CTRYAG | 2 cut(s) | 174, 305 |
| Sse9I | AATT | 2 cut(s) | 261, 395 |
| SsiI | CCGC | 1 cut(s) | 916 |
| SspI | AATATT | 1 cut(s) | 513 |
| SspMI | CTAG | 4 cut(s) | 621, 669, 839, 998 |
| StyD4I | CCNGG | 3 cut(s) | 180, 205, 678 |
| StyI | CCWWGG | 4 cut(s) | 18, 228, 620, 668 |
| TaaI | ACNGT | 3 cut(s) | 221, 379, 529 |
| TaiI | ACGT | 2 cut(s) | 614, 727 |
| TaqI | TCGA | 2 cut(s) | 148, 524 |
| TasI | AATT | 2 cut(s) | 261, 395 |
| TatI | WGTACW | 1 cut(s) | 888 |
| Tru1I | TTAA | 1 cut(s) | 216 |
| Tru9I | TTAA | 1 cut(s) | 216 |
| TscAI | CASTG | 3 cut(s) | 54, 309, 913 |
| TseI | GCWGC | 4 cut(s) | 23, 121, 457, 605 |
| TspDTI | ATGAA | 2 cut(s) | 348, 899 |
| TspGWI | ACGGA | 2 cut(s) | 68, 254 |
| TspRI | CASTG | 3 cut(s) | 54, 309, 913 |
| XapI | RAATTY | 1 cut(s) | 395 |
| XmaJI | CCTAGG | 2 cut(s) | 620, 668 |
| XspI | CTAG | 4 cut(s) | 621, 669, 839, 998 |
| ZrmI | AGTACT | 1 cut(s) | 890 |