Rmu_sc0001022.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001022.1
OG0000187
Physical Location & Seq
Forward (+)
14915 .. 15790
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001022.1_g000003.1.cds

Sequence Viewer

Length: 876 bp
atgacgatgattagttataagcttggggattttcaagagattgataagaccgggaagaaggccacaaagcttcgcatctgggtagaaatccagttgaccaaaccgctgccattcaaaaggtggtattgggtggaagatgaggttgagttcttgtgccagttcaaatatgacaagctttttggccagtgttccatatgcgggctggtgacgcacgttgacctgccttgctcgctcccagcgctagaagaagatgatgacggggctgagaggatgaggttgggaccacgatcggaaactaaaacgccgacggctgctggtggtctgcagatggcacaagtctcttatgcgtctagttcggggacgaagggatgcagcactgcgggtatgaatgctagggttatggttcatggccaaaccatagtctttaagacgcctattcctaacccaacactgcattctccattaagttccttcttgaataagcctcggaggcaagtggtaatcagagagctccaggaaaatgttatgacactggagagacttacaggtaagcgtagaggttgttctgaggagggggtaactatatccccgaagaaattaaagcttaacttggctgtaggcaagcgtaacctaagtttggaatcggaaaaccttggtctggtatccttgtctgaggaaggcaactctggtgatgggaagcggaagtcgggtcacccagctggcaataggaataaattgccatatggggagaaaaagaaaggtgcagcgaaggatgatgctgtgttagggaagaaggcttccaagaaggacaaggtgaaggttgcatctgctggtatgagctccaactcaaaagggaaggagctagttatctattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

31.95

Weight (kDa)

9.55

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 228
AciI CCGC 4 cut(s) 104, 198, 380, 700
AcoI YGGCCR 2 cut(s) 181, 409
AcyI GRCGYC 1 cut(s) 431
AfeI AGCGCT 1 cut(s) 240
AfiI CCNNNNNNNGG 3 cut(s) 198, 637, 658
AgsI TTSAA 4 cut(s) 35, 115, 163, 478
AjnI CCWGG 1 cut(s) 513
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 8 cut(s) 22, 70, 175, 511, 604, 719, 840, 862
AluI AGCT 8 cut(s) 22, 70, 175, 511, 604, 719, 840, 862
Alw21I GWGCWC 2 cut(s) 513, 842
Alw26I GTCTC 2 cut(s) 343, 532
Aor51HI AGCGCT 1 cut(s) 240
AoxI GGCC 3 cut(s) 60, 181, 409
ApeKI GCWGC 4 cut(s) 106, 311, 372, 764
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 4 cut(s) 217, 701, 704, 826
AvaII GGWCC 1 cut(s) 281
BalI TGGCCA 2 cut(s) 183, 411
BanII GRGCYC 2 cut(s) 513, 842
Bbv12I GWGCWC 2 cut(s) 513, 842
BbvI GCAGC 4 cut(s) 93, 298, 384, 776
BccI CCATC 2 cut(s) 322, 686
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 1 cut(s) 515
BciVI GTATCC 1 cut(s) 673
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 343, 532
BfaI CTAG 4 cut(s) 242, 351, 393, 863
BfmI CTRYAG 2 cut(s) 323, 615
BfoI RGCGCY 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 228
BfuI GTATCC 1 cut(s) 673
BglI GCCNNNNNGGC 1 cut(s) 490
BisI GCNGC 4 cut(s) 107, 312, 373, 765
BlsI GCNGC 4 cut(s) 108, 313, 374, 766
Bme1390I CCNGG 2 cut(s) 52, 515
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 2 cut(s) 52, 515
BmsI GCATC 4 cut(s) 84, 359, 766, 833
BpmI CTGGAG 2 cut(s) 497, 554
BpuMI CCSGG 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 485, 652
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 637, 658
Bse1I ACTGG 4 cut(s) 91, 157, 184, 537
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 2 cut(s) 485, 652
BseGI GGATG 3 cut(s) 276, 374, 778
BseLI CCNNNNNNNGG 3 cut(s) 198, 637, 658
BseMII CTCAG 3 cut(s) 255, 558, 663
BseNI ACTGG 4 cut(s) 91, 157, 184, 537
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 4 cut(s) 93, 298, 384, 776
BseYI CCCAGC 2 cut(s) 235, 715
BsgI GTGCAG 1 cut(s) 783
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 62, 183, 411
BsiEI CGRYCG 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 513, 842
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 2 cut(s) 294, 373
BslI CCNNNNNNNGG 3 cut(s) 198, 637, 658
BsmAI GTCTC 2 cut(s) 343, 532
BsmFI GGGAC 2 cut(s) 294, 373
BsmI GAATGC 2 cut(s) 394, 454
BsnI GGCC 3 cut(s) 62, 183, 411
Bsp1286I GDGCHC 2 cut(s) 513, 842
Bsp143I GATC 1 cut(s) 287
BspACI CCGC 4 cut(s) 104, 198, 380, 700
BspANI GGCC 3 cut(s) 62, 183, 411
BspCNI CTCAG 3 cut(s) 256, 559, 664
BspLI GGNNCC 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 228
BsrI ACTGG 4 cut(s) 91, 157, 184, 537
BssECI CCNNGG 2 cut(s) 485, 652
BssMI GATC 1 cut(s) 287
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 652
Bst2UI CCWGG 1 cut(s) 515
BstACI GRCGYC 1 cut(s) 431
BstC8I GCNNGC 4 cut(s) 200, 230, 623, 721
BstDEI CTNAG 4 cut(s) 264, 567, 632, 672
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 3 cut(s) 276, 374, 778
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 2 cut(s) 343, 532
BstMBI GATC 1 cut(s) 287
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 4 cut(s) 208, 229, 238, 490
BstNI CCWGG 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 50, 513
BstSFI CTRYAG 2 cut(s) 323, 615
BstV1I GCAGC 4 cut(s) 93, 298, 384, 776
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 3 cut(s) 62, 183, 411
BtsCI GGATG 3 cut(s) 276, 374, 778
BtsI GCAGTG 2 cut(s) 375, 449
BtsIMutI CAGTG 4 cut(s) 191, 375, 449, 530
BveI ACCTGC 1 cut(s) 228
Cac8I GCNNGC 4 cut(s) 200, 230, 623, 721
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 3 cut(s) 217, 336, 439
CviAII CATG 1 cut(s) 407
DdeI CTNAG 4 cut(s) 264, 567, 632, 672
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 181, 409
Ecl136II GAGCTC 2 cut(s) 511, 840
Eco130I CCWWGG 1 cut(s) 652
Eco24I GRGCYC 2 cut(s) 513, 842
Eco47I GGWCC 1 cut(s) 281
Eco47III AGCGCT 1 cut(s) 240
Eco53kI GAGCTC 2 cut(s) 511, 840
Eco91I GGTNACC 1 cut(s) 710
EcoICRI GAGCTC 2 cut(s) 511, 840
EcoO65I GGTNACC 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 652
EcoT38I GRGCYC 2 cut(s) 513, 842
ErhI CCWWGG 1 cut(s) 652
FaeI CATG 1 cut(s) 410
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 2 cut(s) 294, 373
FatI CATG 1 cut(s) 406
FauI CCCGC 2 cut(s) 191, 373
FauNDI CATATG 2 cut(s) 194, 742
Fnu4HI GCNGC 4 cut(s) 107, 312, 373, 765
FokI GGATG 3 cut(s) 283, 381, 785
FriOI GRGCYC 2 cut(s) 513, 842
Fsp4HI GCNGC 4 cut(s) 107, 312, 373, 765
FspBI CTAG 4 cut(s) 242, 351, 393, 863
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 107, 312, 373, 765
GsaI CCCAGC 2 cut(s) 239, 719
GsuI CTGGAG 2 cut(s) 497, 554
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 3 cut(s) 62, 183, 411
HapII CCGG 1 cut(s) 51
HgaI GACGC 3 cut(s) 217, 336, 439
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 1 cut(s) 410
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 2 cut(s) 96, 217
HindII GTYRAC 2 cut(s) 96, 217
HindIII AAGCTT 4 cut(s) 20, 68, 173, 602
HinfI GANTC 1 cut(s) 641
HpaII CCGG 1 cut(s) 51
HphI GGTGA 4 cut(s) 217, 701, 704, 826
Hpy166II GTNNAC 2 cut(s) 96, 217
Hpy188I TCNGA 6 cut(s) 292, 489, 506, 568, 646, 673
Hpy188III TCNNGA 2 cut(s) 35, 475
Hpy8I GTNNAC 2 cut(s) 96, 217
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 9 cut(s) 52, 358, 481, 671, 763, 787, 799, 811, 850
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 5 cut(s) 325, 372, 454, 764, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 208, 229, 238, 490
HpyF3I CTNAG 4 cut(s) 264, 567, 632, 672
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 1 cut(s) 410
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 4 cut(s) 237, 516, 845, 859
Lsp1109I GCAGC 4 cut(s) 93, 298, 384, 776
LweI GCATC 4 cut(s) 84, 359, 766, 833
MaeI CTAG 4 cut(s) 242, 351, 393, 863
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 4 cut(s) 205, 577, 626, 710
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 6 cut(s) 67, 146, 257, 260, 604, 802
MhlI GDGCHC 2 cut(s) 513, 842
MlsI TGGCCA 2 cut(s) 183, 411
MluCI AATT 2 cut(s) 596, 734
MluNI TGGCCA 2 cut(s) 183, 411
MmeI TCCRAC 1 cut(s) 867
MnlI CCTC 9 cut(s) 133, 261, 267, 483, 495, 551, 562, 565, 667
Mox20I TGGCCA 2 cut(s) 183, 411
MscI TGGCCA 2 cut(s) 183, 411
MseI TTAA 5 cut(s) 426, 464, 599, 606, 874
Msp20I TGGCCA 2 cut(s) 183, 411
MspA1I CMGCKG 2 cut(s) 106, 719
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 52, 515
Mva1269I GAATGC 2 cut(s) 394, 454
MvaI CCWGG 1 cut(s) 515
MwoI GCNNNNNNNGC 4 cut(s) 208, 229, 238, 490
NciI CCSGG 1 cut(s) 52
NdeI CATATG 2 cut(s) 194, 742
NdeII GATC 1 cut(s) 287
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 205, 710
PctI GAATGC 2 cut(s) 394, 454
PfeI GAWTC 1 cut(s) 641
PfoI TCCNGGA 1 cut(s) 513
PkrI GCNGC 4 cut(s) 108, 313, 374, 766
Ple19I CGATCG 1 cut(s) 290
PsiI TTATAA 1 cut(s) 18
Psp124BI GAGCTC 2 cut(s) 513, 842
Psp6I CCWGG 1 cut(s) 513
PspEI GGTNACC 1 cut(s) 710
PspFI CCCAGC 2 cut(s) 235, 715
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 281
PsrI GAACNNNNNNTAC 2 cut(s) 547, 579
PstI CTGCAG 1 cut(s) 327
PvuI CGATCG 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 719
SacI GAGCTC 2 cut(s) 513, 842
SaqAI TTAA 5 cut(s) 426, 464, 599, 606, 874
SatI GCNGC 4 cut(s) 107, 312, 373, 765
Sau3AI GATC 1 cut(s) 287
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 52, 515
SduI GDGCHC 2 cut(s) 513, 842
SfaNI GCATC 4 cut(s) 84, 359, 766, 833
SfcI CTRYAG 2 cut(s) 323, 615
SinI GGWCC 1 cut(s) 281
Sse9I AATT 2 cut(s) 596, 734
SsiI CCGC 4 cut(s) 104, 198, 380, 700
SspMI CTAG 4 cut(s) 242, 351, 393, 863
SstI GAGCTC 2 cut(s) 513, 842
StyD4I CCNGG 2 cut(s) 50, 513
StyI CCWWGG 1 cut(s) 652
TaiI ACGT 1 cut(s) 216
TasI AATT 2 cut(s) 596, 734
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 5 cut(s) 426, 464, 599, 606, 874
Tru9I TTAA 5 cut(s) 426, 464, 599, 606, 874
TscAI CASTG 4 cut(s) 191, 382, 456, 537
TseFI GTSAC 2 cut(s) 205, 710
TseI GCWGC 4 cut(s) 106, 311, 372, 764
Tsp45I GTSAC 2 cut(s) 205, 710
TspDTI ATGAA 2 cut(s) 395, 401
TspRI CASTG 4 cut(s) 191, 382, 456, 537
VpaK11BI GGWCC 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 2 cut(s) 117, 199
XspI CTAG 4 cut(s) 242, 351, 393, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.