Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 105 |
| AciI | CCGC | 1 cut(s) | 25 |
| AclWI | GGATC | 3 cut(s) | 81, 86, 194 |
| AfaI | GTAC | 1 cut(s) | 182 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 183 |
| AgsI | TTSAA | 4 cut(s) | 155, 265, 275, 347 |
| AjnI | CCWGG | 1 cut(s) | 252 |
| AluBI | AGCT | 2 cut(s) | 92, 301 |
| AluI | AGCT | 2 cut(s) | 92, 301 |
| Alw21I | GWGCWC | 1 cut(s) | 94 |
| AlwI | GGATC | 3 cut(s) | 81, 86, 194 |
| AoxI | GGCC | 1 cut(s) | 332 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 392, 424 |
| AsuC2I | CCSGG | 1 cut(s) | 311 |
| AsuHPI | GGTGA | 1 cut(s) | 241 |
| AsuII | TTCGAA | 1 cut(s) | 304 |
| BanII | GRGCYC | 1 cut(s) | 94 |
| BbsI | GAAGAC | 1 cut(s) | 239 |
| Bbv12I | GWGCWC | 1 cut(s) | 94 |
| BbvCI | CCTCAGC | 1 cut(s) | 172 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BccI | CCATC | 2 cut(s) | 131, 345 |
| BciT130I | CCWGG | 1 cut(s) | 254 |
| BcnI | CCSGG | 1 cut(s) | 311 |
| BfaI | CTAG | 1 cut(s) | 125 |
| BisI | GCNGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 1 cut(s) | 148 |
| Bme1390I | CCNGG | 2 cut(s) | 254, 311 |
| BmrFI | CCNGG | 2 cut(s) | 254, 311 |
| BmsI | GCATC | 3 cut(s) | 49, 210, 407 |
| BpiI | GAAGAC | 1 cut(s) | 239 |
| Bpu10I | CCTNAGC | 1 cut(s) | 172 |
| Bpu14I | TTCGAA | 1 cut(s) | 304 |
| BpuMI | CCSGG | 1 cut(s) | 311 |
| BsaBI | GATNNNNATC | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 3 cut(s) | 95, 252, 253 |
| BsaWI | WCCGGW | 1 cut(s) | 115 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 183 |
| Bse118I | RCCGGY | 1 cut(s) | 330 |
| Bse1I | ACTGG | 1 cut(s) | 188 |
| Bse8I | GATNNNNATC | 1 cut(s) | 72 |
| BseBI | CCWGG | 1 cut(s) | 254 |
| BseDI | CCNNGG | 3 cut(s) | 95, 252, 253 |
| BseGI | GGATG | 2 cut(s) | 201, 373 |
| BseJI | GATNNNNATC | 1 cut(s) | 72 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 183 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseNI | ACTGG | 1 cut(s) | 188 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| Bsh1285I | CGRYCG | 1 cut(s) | 70 |
| BshFI | GGCC | 1 cut(s) | 334 |
| BsiEI | CGRYCG | 1 cut(s) | 70 |
| BsiHKAI | GWGCWC | 1 cut(s) | 94 |
| BsiSI | CCGG | 3 cut(s) | 116, 310, 331 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 183 |
| BsnI | GGCC | 1 cut(s) | 334 |
| Bsp119I | TTCGAA | 1 cut(s) | 304 |
| Bsp1286I | GDGCHC | 1 cut(s) | 94 |
| Bsp143I | GATC | 4 cut(s) | 67, 73, 78, 186 |
| Bsp19I | CCATGG | 1 cut(s) | 95 |
| BspACI | CCGC | 1 cut(s) | 25 |
| BspANI | GGCC | 1 cut(s) | 334 |
| BspCNI | CTCAG | 1 cut(s) | 185 |
| BspPI | GGATC | 3 cut(s) | 81, 86, 194 |
| BspT104I | TTCGAA | 1 cut(s) | 304 |
| BsrFI | RCCGGY | 1 cut(s) | 330 |
| BsrI | ACTGG | 1 cut(s) | 188 |
| BssAI | RCCGGY | 1 cut(s) | 330 |
| BssECI | CCNNGG | 3 cut(s) | 95, 252, 253 |
| BssMI | GATC | 4 cut(s) | 67, 73, 78, 186 |
| BssT1I | CCWWGG | 1 cut(s) | 95 |
| Bst2UI | CCWGG | 1 cut(s) | 254 |
| Bst4CI | ACNGT | 1 cut(s) | 11 |
| BstBI | TTCGAA | 1 cut(s) | 304 |
| BstDEI | CTNAG | 2 cut(s) | 172, 222 |
| BstDSI | CCRYGG | 1 cut(s) | 95 |
| BstEII | GGTNACC | 1 cut(s) | 118 |
| BstF5I | GGATG | 2 cut(s) | 201, 373 |
| BstKTI | GATC | 4 cut(s) | 70, 76, 81, 189 |
| BstMBI | GATC | 4 cut(s) | 67, 73, 78, 186 |
| BstMCI | CGRYCG | 1 cut(s) | 70 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 31 |
| BstNI | CCWGG | 1 cut(s) | 254 |
| BstNSI | RCATGY | 1 cut(s) | 284 |
| BstPI | GGTNACC | 1 cut(s) | 118 |
| BstSCI | CCNGG | 2 cut(s) | 252, 309 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BstV2I | GAAGAC | 1 cut(s) | 239 |
| BstX2I | RGATCY | 1 cut(s) | 78 |
| BstYI | RGATCY | 1 cut(s) | 78 |
| BsuRI | GGCC | 1 cut(s) | 334 |
| BtgI | CCRYGG | 1 cut(s) | 95 |
| BtsCI | GGATG | 2 cut(s) | 201, 373 |
| BtsIMutI | CAGTG | 1 cut(s) | 7 |
| Cfr10I | RCCGGY | 1 cut(s) | 330 |
| CseI | GACGC | 1 cut(s) | 3 |
| Csp6I | GTAC | 1 cut(s) | 181 |
| CviAII | CATG | 4 cut(s) | 96, 110, 209, 281 |
| CviJI | RGCY | 6 cut(s) | 92, 128, 146, 176, 301, 334 |
| CviKI_1 | RGCY | 6 cut(s) | 92, 128, 146, 176, 301, 334 |
| CviQI | GTAC | 1 cut(s) | 181 |
| DdeI | CTNAG | 2 cut(s) | 172, 222 |
| DpnI | GATC | 4 cut(s) | 69, 75, 80, 188 |
| DpnII | GATC | 4 cut(s) | 67, 73, 78, 186 |
| EciI | GGCGGA | 1 cut(s) | 40 |
| Ecl136II | GAGCTC | 1 cut(s) | 92 |
| Eco130I | CCWWGG | 1 cut(s) | 95 |
| Eco24I | GRGCYC | 1 cut(s) | 94 |
| Eco53kI | GAGCTC | 1 cut(s) | 92 |
| Eco91I | GGTNACC | 1 cut(s) | 118 |
| EcoICRI | GAGCTC | 1 cut(s) | 92 |
| EcoO65I | GGTNACC | 1 cut(s) | 118 |
| EcoRII | CCWGG | 1 cut(s) | 252 |
| EcoT14I | CCWWGG | 1 cut(s) | 95 |
| EcoT38I | GRGCYC | 1 cut(s) | 94 |
| ErhI | CCWWGG | 1 cut(s) | 95 |
| FaeI | CATG | 4 cut(s) | 99, 113, 212, 284 |
| FaiI | YATR | 7 cut(s) | 97, 105, 111, 210, 239, 282, 385 |
| FatI | CATG | 4 cut(s) | 95, 109, 208, 280 |
| Fnu4HI | GCNGC | 1 cut(s) | 147 |
| FokI | GGATG | 2 cut(s) | 188, 380 |
| FriOI | GRGCYC | 1 cut(s) | 94 |
| Fsp4HI | GCNGC | 1 cut(s) | 147 |
| FspBI | CTAG | 1 cut(s) | 125 |
| GluI | GCNGC | 1 cut(s) | 147 |
| HaeIII | GGCC | 1 cut(s) | 334 |
| HapII | CCGG | 3 cut(s) | 116, 310, 331 |
| HgaI | GACGC | 1 cut(s) | 3 |
| Hin1II | CATG | 4 cut(s) | 99, 113, 212, 284 |
| HindIII | AAGCTT | 1 cut(s) | 299 |
| HinfI | GANTC | 1 cut(s) | 306 |
| HpaII | CCGG | 3 cut(s) | 116, 310, 331 |
| HphI | GGTGA | 1 cut(s) | 241 |
| Hpy166II | GTNNAC | 2 cut(s) | 7, 249 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 78 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 82 |
| Hpy8I | GTNNAC | 2 cut(s) | 7, 249 |
| HpyAV | CCTTC | 3 cut(s) | 22, 79, 283 |
| HpyCH4III | ACNGT | 1 cut(s) | 11 |
| HpyCH4V | TGCA | 2 cut(s) | 196, 387 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 31 |
| HpyF3I | CTNAG | 2 cut(s) | 172, 222 |
| Hsp92II | CATG | 4 cut(s) | 99, 113, 212, 284 |
| Kzo9I | GATC | 4 cut(s) | 67, 73, 78, 186 |
| LmnI | GCTCC | 3 cut(s) | 89, 97, 118 |
| LpnPI | CCDG | 7 cut(s) | 67, 129, 169, 239, 266, 323, 344 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| LweI | GCATC | 3 cut(s) | 49, 210, 407 |
| MaeI | CTAG | 1 cut(s) | 125 |
| MaeIII | GTNAC | 1 cut(s) | 118 |
| MalI | GATC | 4 cut(s) | 69, 75, 80, 188 |
| MboI | GATC | 4 cut(s) | 67, 73, 78, 186 |
| MboII | GAAGA | 1 cut(s) | 244 |
| MflI | RGATCY | 1 cut(s) | 78 |
| MhlI | GDGCHC | 1 cut(s) | 94 |
| MnlI | CCTC | 9 cut(s) | 15, 30, 181, 187, 216, 219, 333, 345, 358 |
| MseI | TTAA | 1 cut(s) | 327 |
| MspI | CCGG | 3 cut(s) | 116, 310, 331 |
| MspR9I | CCNGG | 2 cut(s) | 254, 311 |
| MvaI | CCWGG | 1 cut(s) | 254 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 31 |
| NciI | CCSGG | 1 cut(s) | 311 |
| NcoI | CCATGG | 1 cut(s) | 95 |
| NdeII | GATC | 4 cut(s) | 67, 73, 78, 186 |
| NlaIII | CATG | 4 cut(s) | 99, 113, 212, 284 |
| NspI | RCATGY | 1 cut(s) | 284 |
| NspV | TTCGAA | 1 cut(s) | 304 |
| PasI | CCCWGGG | 1 cut(s) | 253 |
| PfeI | GAWTC | 1 cut(s) | 306 |
| PkrI | GCNGC | 1 cut(s) | 148 |
| Ple19I | CGATCG | 1 cut(s) | 70 |
| PsiI | TTATAA | 1 cut(s) | 105 |
| Psp124BI | GAGCTC | 1 cut(s) | 94 |
| Psp6I | CCWGG | 1 cut(s) | 252 |
| PspEI | GGTNACC | 1 cut(s) | 118 |
| PspGI | CCWGG | 1 cut(s) | 252 |
| PsuI | RGATCY | 1 cut(s) | 78 |
| PvuI | CGATCG | 1 cut(s) | 70 |
| RsaI | GTAC | 1 cut(s) | 182 |
| RsaNI | GTAC | 1 cut(s) | 181 |
| SacI | GAGCTC | 1 cut(s) | 94 |
| SaqAI | TTAA | 1 cut(s) | 327 |
| SatI | GCNGC | 1 cut(s) | 147 |
| Sau3AI | GATC | 4 cut(s) | 67, 73, 78, 186 |
| ScrFI | CCNGG | 2 cut(s) | 254, 311 |
| SduI | GDGCHC | 1 cut(s) | 94 |
| SetI | ASST | 5 cut(s) | 94, 173, 294, 303, 398 |
| SfaNI | GCATC | 3 cut(s) | 49, 210, 407 |
| SfuI | TTCGAA | 1 cut(s) | 304 |
| SsiI | CCGC | 1 cut(s) | 25 |
| SspMI | CTAG | 1 cut(s) | 125 |
| SstI | GAGCTC | 1 cut(s) | 94 |
| StyD4I | CCNGG | 2 cut(s) | 252, 309 |
| StyI | CCWWGG | 1 cut(s) | 95 |
| TaaI | ACNGT | 1 cut(s) | 11 |
| TaqI | TCGA | 4 cut(s) | 304, 375, 415, 422 |
| TfiI | GAWTC | 1 cut(s) | 306 |
| Tru1I | TTAA | 1 cut(s) | 327 |
| Tru9I | TTAA | 1 cut(s) | 327 |
| TscAI | CASTG | 1 cut(s) | 14 |
| TseI | GCWGC | 1 cut(s) | 146 |
| TspDTI | ATGAA | 1 cut(s) | 384 |
| TspRI | CASTG | 1 cut(s) | 14 |
| XceI | RCATGY | 1 cut(s) | 284 |
| XspI | CTAG | 1 cut(s) | 125 |