Rmu_sc0004235.1_g000025

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004235.1
OG0000187
Physical Location & Seq
Reverse (-)
47871 .. 48479
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004235.1_g000025.1.cds

Sequence Viewer

Length: 609 bp
atggttcactgtgcgtcaaggaggcggaaggggcagagggttcttttcactctatctgatgctaccgatcgggatcggatctggaagggagctccatggggttataatcatgctccggttaccctagcctactacgatggcgtggctgctattgaatgggtatcttacacctcagcctcgtactggatcactttgcaaggcatccctcatgcgtttcgttctaagagggtgaagactatgattgggtttaccctgggcgacttcaaggagattgaaaaacatgccaagaaggttgggaagcttcgaatccgggtggaaatccctcttaaccggcctctgccctttcaacgatggtattgggtggaggatgaagtcgagtttttatgcaagtttaggtttgacaaactatttggtcgatgctcgacttgtggcctggttactcatgtaggccttccatgctctggacctcttttggaggagaatgatgaatcaacacgcacggtcttaggtacagcacaggggactaatgcttctgtgcaggagatgcagcttgttaggaacaatggttcaacctcgagttcggtgtcgattagagtaatgaatgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

202

Amino Acids

22.93

Weight (kDa)

9.51

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AccB7I CCANNNNNTGG 1 cut(s) 461
AciI CCGC 1 cut(s) 25
AclWI GGATC 3 cut(s) 81, 86, 194
AfaI GTAC 2 cut(s) 182, 511
AfiI CCNNNNNNNGG 2 cut(s) 183, 461
AgsI TTSAA 5 cut(s) 155, 265, 275, 347, 570
AjnI CCWGG 2 cut(s) 252, 432
AloI GAACNNNNNNTCC 2 cut(s) 550, 582
AluBI AGCT 3 cut(s) 92, 301, 550
AluI AGCT 3 cut(s) 92, 301, 550
Alw21I GWGCWC 1 cut(s) 94
AlwI GGATC 3 cut(s) 81, 86, 194
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 3 cut(s) 332, 430, 448
ApeKI GCWGC 2 cut(s) 146, 547
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 172
BbvI GCAGC 2 cut(s) 133, 559
BccI CCATC 2 cut(s) 131, 345
BciT130I CCWGG 2 cut(s) 254, 434
BcnI CCSGG 1 cut(s) 311
BfaI CTAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 147, 548
BlsI GCNGC 2 cut(s) 148, 549
Bme1390I CCNGG 3 cut(s) 254, 311, 434
Bme18I GGWCC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 464
BmrFI CCNGG 3 cut(s) 254, 311, 434
BmsI GCATC 4 cut(s) 49, 210, 407, 534
BpiI GAAGAC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 95, 252, 253
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 461
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 254, 434
BseDI CCNNGG 3 cut(s) 95, 252, 253
BseGI GGATG 2 cut(s) 201, 373
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 183, 461
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 2 cut(s) 133, 559
BsgI GTGCAG 1 cut(s) 557
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 334, 432, 450
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 3 cut(s) 116, 310, 331
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 2 cut(s) 183, 461
BsmFI GGGAC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 3 cut(s) 334, 432, 450
BsoBI CYCGRG 1 cut(s) 574
Bsp119I TTCGAA 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 4 cut(s) 67, 73, 78, 186
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 1 cut(s) 25
BspANI GGCC 3 cut(s) 334, 432, 450
BspCNI CTCAG 1 cut(s) 185
BspPI GGATC 3 cut(s) 81, 86, 194
BspT104I TTCGAA 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 3 cut(s) 95, 252, 253
BssMI GATC 4 cut(s) 67, 73, 78, 186
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 254, 434
Bst4CI ACNGT 2 cut(s) 11, 502
BstAPI GCANNNNNTGC 1 cut(s) 544
BstBI TTCGAA 1 cut(s) 304
BstDEI CTNAG 3 cut(s) 172, 222, 505
BstDSI CCRYGG 1 cut(s) 95
BstEII GGTNACC 1 cut(s) 118
BstF5I GGATG 2 cut(s) 201, 373
BstKTI GATC 4 cut(s) 70, 76, 81, 189
BstMBI GATC 4 cut(s) 67, 73, 78, 186
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 31, 456, 544
BstNI CCWGG 2 cut(s) 254, 434
BstNSI RCATGY 1 cut(s) 284
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 252, 309, 432
BstV1I GCAGC 2 cut(s) 133, 559
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 3 cut(s) 334, 432, 450
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 2 cut(s) 201, 373
BtsIMutI CAGTG 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 181, 510
CviAII CATG 7 cut(s) 96, 110, 209, 281, 443, 456, 606
CviJI RGCY 9 cut(s) 92, 128, 146, 176, 301, 334, 432, 450, 550
CviKI_1 RGCY 9 cut(s) 92, 128, 146, 176, 301, 334, 432, 450, 550
CviQI GTAC 2 cut(s) 181, 510
DdeI CTNAG 3 cut(s) 172, 222, 505
DpnI GATC 4 cut(s) 69, 75, 80, 188
DpnII GATC 4 cut(s) 67, 73, 78, 186
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 464
Eco53kI GAGCTC 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 574
Eco91I GGTNACC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 252, 432
EcoT14I CCWWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 7 cut(s) 99, 113, 212, 284, 446, 459, 609
FaqI GGGAC 1 cut(s) 535
FatI CATG 7 cut(s) 95, 109, 208, 280, 442, 455, 605
Fnu4HI GCNGC 2 cut(s) 147, 548
FokI GGATG 2 cut(s) 188, 380
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 2 cut(s) 147, 548
FspBI CTAG 1 cut(s) 125
GluI GCNGC 2 cut(s) 147, 548
HaeIII GGCC 3 cut(s) 334, 432, 450
HapII CCGG 3 cut(s) 116, 310, 331
HgaI GACGC 1 cut(s) 3
Hin1II CATG 7 cut(s) 99, 113, 212, 284, 446, 459, 609
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 2 cut(s) 306, 488
HpaII CCGG 3 cut(s) 116, 310, 331
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 7, 249
Hpy188I TCNGA 2 cut(s) 58, 78
Hpy188III TCNNGA 3 cut(s) 71, 82, 462
Hpy8I GTNNAC 2 cut(s) 7, 249
HpyAV CCTTC 4 cut(s) 22, 79, 283, 461
HpyCH4III ACNGT 2 cut(s) 11, 502
HpyCH4V TGCA 5 cut(s) 196, 387, 538, 547, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 456, 544
HpyF3I CTNAG 3 cut(s) 172, 222, 505
Hsp92II CATG 7 cut(s) 99, 113, 212, 284, 446, 459, 609
Kzo9I GATC 4 cut(s) 67, 73, 78, 186
LmnI GCTCC 3 cut(s) 89, 97, 118
Lsp1109I GCAGC 2 cut(s) 133, 559
LweI GCATC 4 cut(s) 49, 210, 407, 534
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 118, 436
MalI GATC 4 cut(s) 69, 75, 80, 188
MboI GATC 4 cut(s) 67, 73, 78, 186
MboII GAAGA 1 cut(s) 244
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 607
MseI TTAA 1 cut(s) 327
MspI CCGG 3 cut(s) 116, 310, 331
MspR9I CCNGG 3 cut(s) 254, 311, 434
Mva1269I GAATGC 1 cut(s) 607
MvaI CCWGG 2 cut(s) 254, 434
MwoI GCNNNNNNNGC 3 cut(s) 31, 456, 544
NciI CCSGG 1 cut(s) 311
NcoI CCATGG 1 cut(s) 95
NdeII GATC 4 cut(s) 67, 73, 78, 186
NlaIII CATG 7 cut(s) 99, 113, 212, 284, 446, 459, 609
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 1 cut(s) 284
NspV TTCGAA 1 cut(s) 304
PaeR7I CTCGAG 1 cut(s) 574
PasI CCCWGGG 1 cut(s) 253
PceI AGGCCT 1 cut(s) 450
PctI GAATGC 1 cut(s) 607
PfeI GAWTC 2 cut(s) 306, 488
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 2 cut(s) 148, 549
Ple19I CGATCG 1 cut(s) 70
PsiI TTATAA 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 252, 432
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 2 cut(s) 252, 432
PspPI GGNCC 1 cut(s) 464
PspXI VCTCGAGB 1 cut(s) 574
PsuI RGATCY 1 cut(s) 78
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 2 cut(s) 182, 511
RsaNI GTAC 2 cut(s) 181, 510
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 2 cut(s) 147, 548
Sau3AI GATC 4 cut(s) 67, 73, 78, 186
Sau96I GGNCC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 254, 311, 434
SduI GDGCHC 1 cut(s) 94
SetI ASST 9 cut(s) 94, 173, 294, 303, 398, 469, 511, 552, 575
SfaNI GCATC 4 cut(s) 49, 210, 407, 534
Sfr274I CTCGAG 1 cut(s) 574
SfuI TTCGAA 1 cut(s) 304
SinI GGWCC 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 574
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 94
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 3 cut(s) 252, 309, 432
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 11, 502
TaqI TCGA 6 cut(s) 304, 375, 415, 422, 575, 587
TfiI GAWTC 2 cut(s) 306, 488
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 14
TseI GCWGC 2 cut(s) 146, 547
TspDTI ATGAA 2 cut(s) 384, 501
TspRI CASTG 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 464
XceI RCATGY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 574
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.