Rmu_sc0003693.1_g000005

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003693.1
OG0000187
Physical Location & Seq
Reverse (-)
27282 .. 27677
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003693.1_g000005.1.cds

Sequence Viewer

Length: 396 bp
atgagttcggttgatgccatggcagctaggctagcctcatctcttgatctcgctaagagaaagaaacaggttgaactccagcctacacaaggccaagggtttgcgacaatcggagattttatggtggggaaattgctcactgctcgggactacaaagtcagatcctttctagggatgttctgcattgcttggcagattaatgggtctctgcaggtcgaggaggctaaagaccagcgggtattgttcactttgtcagatcctaccgacctggttcgtatctggaagggtgctccatgcgggtacaaccatgcatcagtggcgctggcatgctatgactgcgtgatgcctgtggaaaaggttcctctgaccacgacatcatattggattactctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

131

Amino Acids

14.5

Weight (kDa)

8.37

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 202
AciI CCGC 2 cut(s) 235, 297
AclWI GGATC 2 cut(s) 156, 251
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 89, 171
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 2 cut(s) 156, 251
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 23
AseI ATTAAT 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 322
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 3 cut(s) 27, 32, 170
BfmI CTRYAG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 323
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 3 cut(s) 4, 320, 333
BmtI GCTAGC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 18, 94
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 171
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 18, 94
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 89, 171
BseMI GCAATG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 89, 171
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 3 cut(s) 46, 161, 256
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 2 cut(s) 235, 297
BspANI GGCC 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 202
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 156, 251
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 18, 94
BssMI GATC 3 cut(s) 46, 161, 256
BssT1I CCWWGG 2 cut(s) 18, 94
Bst2UI CCWGG 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 33, 324, 328
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 18
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 3 cut(s) 49, 164, 259
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 3 cut(s) 46, 161, 256
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 336
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 2 cut(s) 161, 256
BstYI RGATCY 2 cut(s) 161, 256
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 138, 321
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 3 cut(s) 33, 324, 328
CfoI GCGC 1 cut(s) 322
CsiI ACCWGGT 1 cut(s) 267
Csp6I GTAC 1 cut(s) 301
CviAII CATG 4 cut(s) 19, 294, 308, 327
CviJI RGCY 6 cut(s) 26, 31, 35, 82, 93, 224
CviKI_1 RGCY 6 cut(s) 26, 31, 35, 82, 93, 224
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 54
DpnI GATC 3 cut(s) 48, 163, 258
DpnII GATC 3 cut(s) 46, 161, 256
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 18, 94
Eco31I GGTCTC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 144
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 2 cut(s) 18, 94
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 18, 94
FaeI CATG 4 cut(s) 22, 297, 311, 330
FaiI YATR 7 cut(s) 20, 122, 295, 309, 328, 333, 379
FaqI GGGAC 1 cut(s) 161
FatI CATG 4 cut(s) 18, 293, 307, 326
FauI CCCGC 2 cut(s) 228, 290
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 3 cut(s) 27, 32, 170
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 1 cut(s) 93
HhaI GCGC 1 cut(s) 322
Hin1II CATG 4 cut(s) 22, 297, 311, 330
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 4 cut(s) 113, 161, 256, 366
Hpy188III TCNNGA 3 cut(s) 44, 146, 280
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 183, 211, 311
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 336
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 4 cut(s) 22, 297, 311, 330
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 3 cut(s) 46, 161, 256
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 9 cut(s) 53, 92, 197, 245, 254, 265, 281, 308, 360
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 3 cut(s) 4, 320, 333
MabI ACCWGGT 1 cut(s) 267
MaeI CTAG 3 cut(s) 27, 32, 170
MalI GATC 3 cut(s) 48, 163, 258
MboI GATC 3 cut(s) 46, 161, 256
MflI RGATCY 2 cut(s) 161, 256
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 1 cut(s) 131
MnlI CCTC 4 cut(s) 46, 211, 214, 372
Mph1103I ATGCAT 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 336
NcoI CCATGG 1 cut(s) 18
NdeII GATC 3 cut(s) 46, 161, 256
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 4 cut(s) 22, 297, 311, 330
NlaIV GGNNCC 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 357
PkrI GCNGC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 360
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 2 cut(s) 161, 256
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 3 cut(s) 46, 161, 256
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 292
SetI ASST 5 cut(s) 28, 72, 216, 270, 360
SexAI ACCWGGT 1 cut(s) 267
SfaNI GCATC 3 cut(s) 4, 320, 333
SfcI CTRYAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 330
Sse9I AATT 1 cut(s) 131
SsiI CCGC 2 cut(s) 235, 297
SspMI CTAG 3 cut(s) 27, 32, 170
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 2 cut(s) 18, 94
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 131
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 2 cut(s) 145, 321
TseI GCWGC 1 cut(s) 23
TspRI CASTG 2 cut(s) 145, 321
VspI ATTAAT 1 cut(s) 198
XagI CCTNNNNNAGG 1 cut(s) 87
XceI RCATGY 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 3 cut(s) 27, 32, 170
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.