Rmu_sc0000342.1_g000015

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000342.1
OG0000187
Physical Location & Seq
Reverse (-)
83082 .. 83762
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000342.1_g000015.1.cds

Sequence Viewer

Length: 681 bp
atgtttcgatctgcctggagggtcaatgggacgctgaaagttgaagacgctgaaggaggtagggttttgttcactttttcagatcctacagaccgagctagggtttggaggggcgcatcatggggttttaaccgtgctcctgtggctttggctgagtatgatgtggttatgccaattgagaaggtgccattggtgaaatcctcctattggatcacgctgcagggtattccacctgcgtttagatctgaaagggtgatgacgatgatcggatatacgttgggggactttcaggagattgataagcaggggaagaaggttggcaagtaccggattcgggttgagattcctctgataaggccattgtcctttcaacgttggtattgggtggaggacacagtggagtttctatgcaaattcaggtatgataagttgtttgggaggtgtggagtgtgtgggttgatcacccatgttggactgtcgtgctcggggccaccgttgaacgaagaagatgatgctgcagagcgcacggtattagagccgccgccggttgtgcagggtaatgccatgcaggtcgggatcagcggcttgactacggggtcgggttctgaaggttgcagccatgaagctgcattcaatcctaaggtttctttcgatgggcacagtttgatcttcaagacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

226

Amino Acids

25.26

Weight (kDa)

7.62

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 241
AasI GACNNNNNNGTC 1 cut(s) 595
Acc36I ACCTGC 2 cut(s) 241, 559
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 3 cut(s) 539, 542, 582
AclI AACGTT 1 cut(s) 373
AclWI GGATC 3 cut(s) 77, 218, 584
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 2 cut(s) 72, 627
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 100, 207, 334
AgsI TTSAA 5 cut(s) 44, 371, 499, 634, 673
AjnI CCWGG 1 cut(s) 14
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 98, 626
AluI AGCT 2 cut(s) 98, 626
Alw21I GWGCWC 2 cut(s) 139, 485
AlwI GGATC 3 cut(s) 77, 218, 584
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 2 cut(s) 356, 488
ApeKI GCWGC 4 cut(s) 217, 515, 615, 626
ApoI RAATTY 1 cut(s) 413
AspLEI GCGC 2 cut(s) 116, 525
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 3 cut(s) 205, 265, 454
AvaI CYCGRG 1 cut(s) 484
AxyI CCTNAGG 1 cut(s) 639
BaeGI GKGCMC 1 cut(s) 660
BanI GGYRCC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 139, 485
BbvI GCAGC 4 cut(s) 204, 502, 613, 627
BccI CCATC 1 cut(s) 647
BciT130I CCWGG 1 cut(s) 16
BclI TGATCA 1 cut(s) 459
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 3 cut(s) 87, 218, 516
BfuAI ACCTGC 2 cut(s) 241, 559
BglII AGATCT 1 cut(s) 242
BisI GCNGC 7 cut(s) 218, 516, 539, 542, 583, 616, 627
BlsI GCNGC 7 cut(s) 219, 517, 540, 543, 584, 617, 628
Bme1390I CCNGG 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 2 cut(s) 186, 489
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 2 cut(s) 125, 502
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 207, 334
Bse118I RCCGGY 1 cut(s) 544
Bse21I CCTNAGG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 16
BseLI CCNNNNNNNGG 3 cut(s) 100, 207, 334
BseMII CTCAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 4 cut(s) 204, 502, 613, 627
BsgI GTGCAG 1 cut(s) 572
BshFI GGCC 2 cut(s) 358, 490
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 2 cut(s) 139, 485
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 2 cut(s) 328, 545
BslFI GGGAC 2 cut(s) 43, 296
BslI CCNNNNNNNGG 3 cut(s) 100, 207, 334
BsmFI GGGAC 2 cut(s) 43, 296
BsmI GAATGC 1 cut(s) 629
BsnI GGCC 2 cut(s) 358, 490
BsoBI CYCGRG 1 cut(s) 484
Bsp1286I GDGCHC 3 cut(s) 139, 485, 660
Bsp143I GATC 8 cut(s) 8, 82, 210, 242, 264, 459, 576, 666
BspACI CCGC 3 cut(s) 539, 542, 582
BspANI GGCC 2 cut(s) 358, 490
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 186, 489
BspMAI CTGCAG 2 cut(s) 222, 520
BspMI ACCTGC 2 cut(s) 241, 559
BspPI GGATC 3 cut(s) 77, 218, 584
BspT107I GGYRCC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 544
BssAI RCCGGY 1 cut(s) 544
BssMI GATC 8 cut(s) 8, 82, 210, 242, 264, 459, 576, 666
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 6 cut(s) 134, 397, 477, 495, 529, 662
BstDEI CTNAG 2 cut(s) 153, 639
BstHHI GCGC 2 cut(s) 116, 525
BstKTI GATC 8 cut(s) 11, 85, 213, 245, 267, 462, 579, 669
BstMBI GATC 8 cut(s) 8, 82, 210, 242, 264, 459, 576, 666
BstMWI GCNNNNNNNGC 2 cut(s) 143, 550
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 3 cut(s) 87, 218, 516
BstSLI GKGCMC 1 cut(s) 660
BstV1I GCAGC 4 cut(s) 204, 502, 613, 627
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 82, 242
BstYI RGATCY 2 cut(s) 82, 242
Bsu36I CCTNAGG 1 cut(s) 639
BsuRI GGCC 2 cut(s) 358, 490
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 2 cut(s) 241, 559
CfoI GCGC 2 cut(s) 116, 525
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 488
CseI GACGC 2 cut(s) 40, 56
Csp6I GTAC 1 cut(s) 325
CviAII CATG 4 cut(s) 120, 467, 565, 620
CviJI RGCY 9 cut(s) 98, 146, 152, 358, 490, 538, 585, 618, 626
CviKI_1 RGCY 9 cut(s) 98, 146, 152, 358, 490, 538, 585, 618, 626
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 2 cut(s) 153, 639
DpnI GATC 8 cut(s) 10, 84, 212, 244, 266, 461, 578, 668
DpnII GATC 8 cut(s) 8, 82, 210, 242, 264, 459, 576, 666
DrdI GACNNNNNNGTC 1 cut(s) 595
DseDI GACNNNNNNGTC 1 cut(s) 595
Eco57I CTGAAG 2 cut(s) 72, 627
Eco81I CCTNAGG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 4 cut(s) 123, 470, 568, 623
FaiI YATR 9 cut(s) 121, 159, 170, 273, 409, 423, 468, 566, 621
FaqI GGGAC 2 cut(s) 43, 296
FatI CATG 4 cut(s) 119, 466, 564, 619
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 7 cut(s) 218, 516, 539, 542, 583, 616, 627
Fsp4HI GCNGC 7 cut(s) 218, 516, 539, 542, 583, 616, 627
FspBI CTAG 1 cut(s) 99
GlaI GCGC 2 cut(s) 115, 524
GluI GCNGC 7 cut(s) 218, 516, 539, 542, 583, 616, 627
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 2 cut(s) 358, 490
HapII CCGG 2 cut(s) 328, 545
HgaI GACGC 2 cut(s) 40, 56
HhaI GCGC 2 cut(s) 116, 525
Hin1II CATG 4 cut(s) 123, 470, 568, 623
Hin6I GCGC 2 cut(s) 114, 523
HinP1I GCGC 2 cut(s) 114, 523
HinfI GANTC 2 cut(s) 331, 343
HpaII CCGG 2 cut(s) 328, 545
HphI GGTGA 3 cut(s) 205, 265, 454
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 5 cut(s) 82, 247, 269, 351, 607
Hpy188III TCNNGA 3 cut(s) 290, 574, 673
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 4 cut(s) 47, 175, 307, 602
HpyCH4III ACNGT 6 cut(s) 134, 397, 477, 495, 529, 662
HpyCH4IV ACGT 2 cut(s) 275, 373
HpyCH4V TGCA 7 cut(s) 220, 411, 518, 553, 568, 615, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 550
HpyF3I CTNAG 2 cut(s) 153, 639
HpySE526I ACGT 2 cut(s) 275, 373
Hsp92II CATG 4 cut(s) 123, 470, 568, 623
HspAI GCGC 2 cut(s) 114, 523
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 8 cut(s) 8, 82, 210, 242, 264, 459, 576, 666
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 4 cut(s) 204, 502, 613, 627
LweI GCATC 2 cut(s) 125, 502
MaeI CTAG 1 cut(s) 99
MaeII ACGT 2 cut(s) 275, 373
MalI GATC 8 cut(s) 10, 84, 212, 244, 266, 461, 578, 668
MboI GATC 8 cut(s) 8, 82, 210, 242, 264, 459, 576, 666
MboII GAAGA 5 cut(s) 56, 322, 515, 518, 661
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 82, 242
MhlI GDGCHC 3 cut(s) 139, 485, 660
MluCI AATT 2 cut(s) 174, 413
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 7 cut(s) 12, 50, 102, 211, 357, 382, 432
MseI TTAA 2 cut(s) 129, 679
MspA1I CMGCKG 1 cut(s) 582
MspI CCGG 2 cut(s) 328, 545
MspR9I CCNGG 1 cut(s) 16
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 629
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 143, 550
NdeII GATC 8 cut(s) 8, 82, 210, 242, 264, 459, 576, 666
NlaIII CATG 4 cut(s) 123, 470, 568, 623
NlaIV GGNNCC 2 cut(s) 186, 489
PaqCI CACCTGC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PctI GAATGC 1 cut(s) 629
PfeI GAWTC 2 cut(s) 331, 343
PkrI GCNGC 7 cut(s) 219, 517, 540, 543, 584, 617, 628
Psp1406I AACGTT 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 186, 489
PspPI GGNCC 1 cut(s) 488
PstI CTGCAG 2 cut(s) 222, 520
PsuI RGATCY 2 cut(s) 82, 242
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 2 cut(s) 129, 679
SatI GCNGC 7 cut(s) 218, 516, 539, 542, 583, 616, 627
Sau3AI GATC 8 cut(s) 8, 82, 210, 242, 264, 459, 576, 666
Sau96I GGNCC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 3 cut(s) 139, 485, 660
SfaNI GCATC 2 cut(s) 125, 502
SfcI CTRYAG 3 cut(s) 87, 218, 516
Sse9I AATT 2 cut(s) 174, 413
SsiI CCGC 3 cut(s) 539, 542, 582
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 6 cut(s) 134, 397, 477, 495, 529, 662
TaiI ACGT 2 cut(s) 278, 376
TaqI TCGA 2 cut(s) 7, 651
TaqII GACCGA 1 cut(s) 108
TasI AATT 2 cut(s) 174, 413
TauI GCSGC 3 cut(s) 541, 544, 585
TfiI GAWTC 2 cut(s) 331, 343
Tru1I TTAA 2 cut(s) 129, 679
Tru9I TTAA 2 cut(s) 129, 679
TscAI CASTG 1 cut(s) 402
TseI GCWGC 4 cut(s) 217, 515, 615, 626
TspDTI ATGAA 1 cut(s) 636
TspRI CASTG 1 cut(s) 402
XapI RAATTY 1 cut(s) 413
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.