Rmu_sc0001484.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001484.1
OG0000187
Physical Location & Seq
Reverse (-)
40864 .. 41760
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001484.1_g000008.1.cds

Sequence Viewer

Length: 408 bp
atgcaagatagggttcagttcacgttgtcgaaccctacaaaaagatactggatcactctccaaggtacctttgaacaggagatcgataagaatggcaagaaagttgggaagctttggattcgagtcaagatacctttgaacaagccattgccttttaaacgctggtactgggtagaagatgaggttgaattcttgtacagattcaagtacgacaaacttttaggtcattgttctaattgcggcctggtgactcatgttggcttgtcgtgttcgggaccgacactgaacgaggaaggtgaggaggttgagcgaactattctgggttcccagcctatggtactggcggccgtagactggagtgttgccattgaacgaaaccacgacggtgtcgagctctggtacctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.77

Weight (kDa)

6.3

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 65, 399
AccB1I GGYRCC 2 cut(s) 65, 399
AccB7I CCANNNNNTGG 1 cut(s) 334
AccI GTMKAC 1 cut(s) 351
AciI CCGC 2 cut(s) 240, 344
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 6 cut(s) 67, 167, 197, 209, 339, 401
AfiI CCNNNNNNNGG 2 cut(s) 334, 354
AgsI TTSAA 5 cut(s) 74, 139, 188, 205, 371
AjnI CCWGG 1 cut(s) 243
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 2 cut(s) 112, 394
AluI AGCT 2 cut(s) 112, 394
Alw21I GWGCWC 1 cut(s) 396
AlwI GGATC 1 cut(s) 59
AoxI GGCC 2 cut(s) 241, 345
ApoI RAATTY 1 cut(s) 188
Asp718I GGTACC 2 cut(s) 65, 399
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 259, 308
AvaII GGWCC 1 cut(s) 275
BanI GGYRCC 2 cut(s) 65, 399
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 396
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 245
BfaI CTAG 1 cut(s) 406
BisI GCNGC 2 cut(s) 241, 345
BlsI GCNGC 2 cut(s) 242, 346
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 4 cut(s) 67, 276, 325, 401
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 376
Bsa29I ATCGAT 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 354
Bse1I ACTGG 4 cut(s) 53, 173, 345, 359
Bse3DI GCAATG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 334, 354
BseMI GCAATG 1 cut(s) 146
BseNI ACTGG 4 cut(s) 53, 173, 345, 359
BseRI GAGGAG 1 cut(s) 314
BseX3I CGGCCG 1 cut(s) 345
BseYI CCCAGC 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 2 cut(s) 243, 347
BshNI GGYRCC 2 cut(s) 65, 399
BshVI ATCGAT 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 396
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 2 cut(s) 334, 354
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 2 cut(s) 243, 347
Bsp1286I GDGCHC 1 cut(s) 396
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 2 cut(s) 51, 81
BspACI CCGC 2 cut(s) 240, 344
BspANI GGCC 2 cut(s) 243, 347
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 67, 276, 325, 401
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 2 cut(s) 65, 399
BsrDI GCAATG 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 4 cut(s) 53, 173, 345, 359
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 2 cut(s) 51, 81
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 195
BstKTI GATC 2 cut(s) 54, 84
BstMBI GATC 2 cut(s) 51, 81
BstMCI CGRYCG 1 cut(s) 348
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 2 cut(s) 243, 347
BsuTUI ATCGAT 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 6 cut(s) 66, 166, 196, 208, 338, 400
CviAII CATG 1 cut(s) 254
CviJI RGCY 7 cut(s) 112, 145, 243, 261, 331, 347, 394
CviKI_1 RGCY 7 cut(s) 112, 145, 243, 261, 331, 347, 394
CviQI GTAC 6 cut(s) 66, 166, 196, 208, 338, 400
DpnI GATC 2 cut(s) 53, 83
DpnII GATC 2 cut(s) 51, 81
DraI TTTAAA 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 345
EagI CGGCCG 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 394
EclXI CGGCCG 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 275
Eco52I CGGCCG 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 257
FaiI YATR 2 cut(s) 255, 335
FaqI GGGAC 1 cut(s) 288
FatI CATG 1 cut(s) 253
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 241, 345
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 241, 345
FspBI CTAG 1 cut(s) 406
GluI GCNGC 2 cut(s) 241, 345
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 376
HaeIII GGCC 2 cut(s) 243, 347
Hin1II CATG 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 118, 123, 201, 250
HphI GGTGA 2 cut(s) 259, 308
Hpy166II GTNNAC 2 cut(s) 21, 352
Hpy188III TCNNGA 2 cut(s) 127, 273
Hpy8I GTNNAC 2 cut(s) 21, 352
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 1 cut(s) 257
KpnI GGTACC 2 cut(s) 69, 403
Kzo9I GATC 2 cut(s) 51, 81
MaeI CTAG 1 cut(s) 406
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 53, 83
MboI GATC 2 cut(s) 51, 81
MboII GAAGA 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 2 cut(s) 188, 235
MlyI GAGTC 2 cut(s) 132, 244
MnlI CCTC 4 cut(s) 175, 283, 292, 295
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
NdeII GATC 2 cut(s) 51, 81
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 4 cut(s) 67, 276, 325, 401
NmuCI GTSAC 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PfeI GAWTC 2 cut(s) 118, 201
PflFI GACNNNGTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 2 cut(s) 242, 346
PleI GAGTC 2 cut(s) 131, 244
PpsI GAGTC 2 cut(s) 131, 244
Psp124BI GAGCTC 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 4 cut(s) 67, 276, 325, 401
PspPI GGNCC 1 cut(s) 275
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 6 cut(s) 67, 167, 197, 209, 339, 401
RsaNI GTAC 6 cut(s) 66, 166, 196, 208, 338, 400
RseI CAYNNNNRTG 1 cut(s) 384
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 241, 345
Sau3AI GATC 2 cut(s) 51, 81
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 2 cut(s) 132, 244
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 396
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 2 cut(s) 188, 235
SsiI CCGC 2 cut(s) 240, 344
SspMI CTAG 1 cut(s) 406
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 26
TaqI TCGA 4 cut(s) 29, 84, 121, 390
TaqII GACCGA 1 cut(s) 292
TasI AATT 2 cut(s) 188, 235
TatI WGTACW 1 cut(s) 195
TauI GCSGC 2 cut(s) 243, 347
TfiI GAWTC 2 cut(s) 118, 201
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspRI CASTG 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.