Rmu_sc0002426.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002426.1
OG0000187
Physical Location & Seq
Forward (+)
8453 .. 9058
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002426.1_g000003.1.cds

Sequence Viewer

Length: 606 bp
ctgccattcaaaaggtggtattgggtggaagacgaggttgaattcttgtgcaagttcaaatatgacaagcttttcggttggtgttccatatgtgggctggtgacacacgttggcctaccttgctccaggccggcgttggaggaagatgatgacggggctgagaggacgatgctggggatgcaaccggcaactacaatgccggcgaatgttgctggtgatctgcagatgcagccgggtctttgctgcgtccagttcggggacgaagggatgcaacactacagtctgaatgctaaggttttggttcatggtcaaaccctagtttttaagatgcccattcttaacccaatgttagattctttgttgagttccttcctgaacaagtctcggaggcaggtggtgatcagagagctccaggaaactgctatgacactggagagatttatcagtaagcgtagaggtcattctgaggagggcataagtatctccccaaagaaattaaagcttagcttggctgtgggcaagcgtaaccagaacttggagccgaaaaaccttggtctggtatctttgtcagaggaaagtagctctggaagtggaaagccgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.49

Weight (kDa)

8.23

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 382
Acc36I ACCTGC 1 cut(s) 382
AccB7I CCANNNNNTGG 1 cut(s) 535
AcsI RAATTY 1 cut(s) 41
AfiI CCNNNNNNNGG 4 cut(s) 93, 256, 535, 556
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 3 cut(s) 10, 41, 58
AjnI CCWGG 2 cut(s) 125, 411
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 5 cut(s) 70, 409, 502, 507, 582
AluI AGCT 5 cut(s) 70, 409, 502, 507, 582
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 387
AoxI GGCC 2 cut(s) 112, 128
ApeKI GCWGC 2 cut(s) 229, 243
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 112, 227, 409
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 230, 241
BciT130I CCWGG 2 cut(s) 127, 413
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 2 cut(s) 221, 277
BfuAI ACCTGC 1 cut(s) 382
BisI GCNGC 2 cut(s) 230, 244
BlpI GCTNAGC 1 cut(s) 503
BlsI GCNGC 2 cut(s) 231, 245
Bme1390I CCNGG 3 cut(s) 127, 234, 413
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 3 cut(s) 127, 234, 413
BmsI GCATC 5 cut(s) 159, 168, 216, 258, 318
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 3 cut(s) 109, 395, 452
Bpu10I CCTNAGC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 550
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 256, 535, 556
Bse118I RCCGGY 3 cut(s) 130, 184, 199
Bse1I ACTGG 2 cut(s) 250, 435
BseBI CCWGG 2 cut(s) 127, 413
BseDI CCNNGG 1 cut(s) 550
BseGI GGATG 2 cut(s) 183, 273
BseLI CCNNNNNNNGG 4 cut(s) 93, 256, 535, 556
BseMII CTCAG 2 cut(s) 150, 456
BseNI ACTGG 2 cut(s) 250, 435
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 2 cut(s) 230, 241
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 114, 130
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 4 cut(s) 131, 185, 200, 233
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 4 cut(s) 93, 256, 535, 556
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 2 cut(s) 114, 130
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 2 cut(s) 217, 399
Bsp1720I GCTNAGC 1 cut(s) 503
BspANI GGCC 2 cut(s) 114, 130
BspCNI CTCAG 2 cut(s) 151, 457
BspLI GGNNCC 1 cut(s) 540
BspMAI CTGCAG 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 382
BsrFI RCCGGY 3 cut(s) 130, 184, 199
BsrI ACTGG 2 cut(s) 250, 435
BssAI RCCGGY 3 cut(s) 130, 184, 199
BssECI CCNNGG 1 cut(s) 550
BssMI GATC 2 cut(s) 217, 399
BssT1I CCWWGG 1 cut(s) 550
Bst2UI CCWGG 2 cut(s) 127, 413
Bst4CI ACNGT 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 132, 201, 521
BstDEI CTNAG 4 cut(s) 159, 291, 465, 503
BstF5I GGATG 2 cut(s) 183, 273
BstKTI GATC 2 cut(s) 220, 402
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 2 cut(s) 217, 399
BstMWI GCNNNNNNNGC 4 cut(s) 120, 178, 209, 229
BstNI CCWGG 2 cut(s) 127, 413
BstSCI CCNGG 3 cut(s) 125, 232, 411
BstSFI CTRYAG 2 cut(s) 221, 277
BstV1I GCAGC 2 cut(s) 230, 241
BstV2I GAAGAC 1 cut(s) 36
BsuRI GGCC 2 cut(s) 114, 130
BtsCI GGATG 2 cut(s) 183, 273
BtsIMutI CAGTG 1 cut(s) 428
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 3 cut(s) 132, 201, 521
Cfr10I RCCGGY 3 cut(s) 130, 184, 199
CseI GACGC 1 cut(s) 235
CviAII CATG 1 cut(s) 305
DdeI CTNAG 4 cut(s) 159, 291, 465, 503
DpnI GATC 2 cut(s) 219, 401
DpnII GATC 2 cut(s) 217, 399
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 125, 411
EcoT14I CCWWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 1 cut(s) 308
FaiI YATR 6 cut(s) 63, 89, 91, 306, 425, 476
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 304
FauNDI CATATG 1 cut(s) 89
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 2 cut(s) 230, 244
FokI GGATG 2 cut(s) 190, 280
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 2 cut(s) 230, 244
FspBI CTAG 1 cut(s) 317
GluI GCNGC 2 cut(s) 230, 244
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 3 cut(s) 109, 395, 452
HaeIII GGCC 2 cut(s) 114, 130
HapII CCGG 4 cut(s) 131, 185, 200, 233
HgaI GACGC 1 cut(s) 235
Hin1II CATG 1 cut(s) 308
HindIII AAGCTT 2 cut(s) 68, 500
HinfI GANTC 1 cut(s) 353
HpaII CCGG 4 cut(s) 131, 185, 200, 233
HphI GGTGA 3 cut(s) 112, 227, 409
Hpy188I TCNGA 5 cut(s) 285, 387, 404, 466, 571
Hpy188III TCNNGA 2 cut(s) 373, 585
HpyAV CCTTC 2 cut(s) 257, 379
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 51, 181, 223, 229, 271
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 178, 209, 229
HpyF3I CTNAG 4 cut(s) 159, 291, 465, 503
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 308
KroI GCCGGC 2 cut(s) 130, 199
KroNI GCCGGC 2 cut(s) 132, 201
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 2 cut(s) 217, 399
LmnI GCTCC 3 cut(s) 128, 414, 538
Lsp1109I GCAGC 2 cut(s) 230, 241
LweI GCATC 5 cut(s) 159, 168, 216, 258, 318
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 100, 524
MalI GATC 2 cut(s) 219, 401
MboI GATC 2 cut(s) 217, 399
MboII GAAGA 2 cut(s) 41, 155
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 2 cut(s) 41, 494
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 8 cut(s) 28, 133, 156, 381, 449, 460, 463, 565
MroNI GCCGGC 2 cut(s) 130, 199
MseI TTAA 3 cut(s) 324, 339, 497
MspI CCGG 4 cut(s) 131, 185, 200, 233
MspR9I CCNGG 3 cut(s) 127, 234, 413
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 127, 413
MwoI GCNNNNNNNGC 4 cut(s) 120, 178, 209, 229
NaeI GCCGGC 2 cut(s) 132, 201
NciI CCSGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 89
NdeII GATC 2 cut(s) 217, 399
NgoMIV GCCGGC 2 cut(s) 130, 199
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 382
PctI GAATGC 1 cut(s) 292
PdiI GCCGGC 2 cut(s) 132, 201
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 1 cut(s) 535
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 2 cut(s) 231, 245
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 125, 411
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 2 cut(s) 125, 411
PspN4I GGNNCC 1 cut(s) 540
PstI CTGCAG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 3 cut(s) 324, 339, 497
SatI GCNGC 2 cut(s) 230, 244
Sau3AI GATC 2 cut(s) 217, 399
ScrFI CCNGG 3 cut(s) 127, 234, 413
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 5 cut(s) 159, 168, 216, 258, 318
SfcI CTRYAG 2 cut(s) 221, 277
Sse9I AATT 2 cut(s) 41, 494
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 3 cut(s) 125, 232, 411
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 111
TasI AATT 2 cut(s) 41, 494
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 3 cut(s) 324, 339, 497
Tru9I TTAA 3 cut(s) 324, 339, 497
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 229, 243
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 1 cut(s) 435
Van91I CCANNNNNTGG 1 cut(s) 535
XapI RAATTY 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 3 cut(s) 12, 94, 133
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.