Rorug06G0089400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
11896797 .. 11898895
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0089400.1

Sequence Viewer

Length: 597 bp
ATGAGCCACGCCAAGAGAAGCGTTCCCGGGACTGTGCCGATGAAGCCGAATTTCGACGAGCGGAAACCCTCGCCGGTTGTCACCACCTCCACCGGCAAGCGCGTTAGTTACCTTCAGAATGACAGAGACGGTAGCTTGAAGAAGGCCTACAAAGAGTGGACTTTGGTTGGTGCATTGACTGCTTCTGGGCTTCCCACTGCCATTTATGCACTCCAGAATAGTTTGCTTCAGATTTCGTACAAGAATCTCGATTCTTTAACCTTCTCAATGCTCAACCAAACTAAGATCATTTTTATTGCTATCTGTACTTATTTGATATTGAGCTGTTCTTCTAAGTTTCGAGGAAGGGTTGAGCAAAAGTCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTGGTCATACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTTTGCTTGTTGGTTAGCACCACTAAGTCTCTCGAAGGAGAAGCTATCAGAAAACATGGGCTTTTCTATGGATGGATTCTACTGACTTGGATCCCAGTCAAGTCCAATGCCTTTGGTGGAATTCTTGTTGGCCTAGTTACTGTATTCTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.99

Weight (kDa)

9.77

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 64 - 108 9.1e-07 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 61
AccII CGCG 1 cut(s) 102
AciI CCGC 1 cut(s) 61
AclWI GGATC 2 cut(s) 526, 539
AcsI RAATTY 2 cut(s) 49, 561
AcuI CTGAAG 2 cut(s) 98, 212
AfaI GTAC 2 cut(s) 239, 307
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 3 cut(s) 135, 324, 485
AluI AGCT 3 cut(s) 135, 324, 485
Alw26I GTCTC 2 cut(s) 120, 474
AlwI GGATC 2 cut(s) 526, 539
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 3 cut(s) 144, 571, 591
ApoI RAATTY 2 cut(s) 49, 561
AspLEI GCGC 1 cut(s) 102
AsuC2I CCSGG 2 cut(s) 27, 28
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 26
BamHI GGATCC 1 cut(s) 531
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BccI CCATC 1 cut(s) 507
BciT130I CCWGG 1 cut(s) 386
BcnI CCSGG 2 cut(s) 27, 28
BcoDI GTCTC 2 cut(s) 120, 474
BfaI CTAG 2 cut(s) 575, 595
BfmI CTRYAG 1 cut(s) 417
Bme1390I CCNGG 3 cut(s) 27, 28, 386
BmeT110I CYCGRG 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 533
BmrFI CCNGG 3 cut(s) 27, 28, 386
BmrI ACTGGG 1 cut(s) 530
BmuI ACTGGG 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 2 cut(s) 26, 384
Bse118I RCCGGY 2 cut(s) 73, 92
Bse1I ACTGG 2 cut(s) 404, 536
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 26, 384
BseGI GGATG 1 cut(s) 518
BseNI ACTGG 2 cut(s) 404, 536
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 146, 573, 593
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 27, 74, 93
BslFI GGGAC 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 120, 474
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 3 cut(s) 146, 573, 593
BsoBI CYCGRG 1 cut(s) 26
Bsp143I GATC 2 cut(s) 285, 531
BspACI CCGC 1 cut(s) 61
BspANI GGCC 3 cut(s) 146, 573, 593
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 533
BspPI GGATC 2 cut(s) 526, 539
BsrBI CCGCTC 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 73, 92
BsrI ACTGG 2 cut(s) 404, 536
BssAI RCCGGY 2 cut(s) 73, 92
BssECI CCNNGG 2 cut(s) 26, 384
BssMI GATC 2 cut(s) 285, 531
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 4 cut(s) 34, 131, 418, 583
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 3 cut(s) 282, 333, 465
BstF5I GGATG 1 cut(s) 518
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 288, 534
BstMAI GTCTC 2 cut(s) 120, 474
BstMBI GATC 2 cut(s) 285, 531
BstMWI GCNNNNNNNGC 3 cut(s) 43, 179, 206
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 3 cut(s) 25, 26, 384
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 3 cut(s) 146, 573, 593
BtsCI GGATG 1 cut(s) 518
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 195, 397
Cac8I GCNNGC 1 cut(s) 98
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 2 cut(s) 73, 92
Cfr9I CCCGGG 1 cut(s) 26
Csp6I GTAC 2 cut(s) 238, 306
CviAII CATG 1 cut(s) 497
CviQI GTAC 2 cut(s) 238, 306
DdeI CTNAG 3 cut(s) 282, 333, 465
DpnI GATC 2 cut(s) 287, 533
DpnII GATC 2 cut(s) 285, 531
Eco147I AGGCCT 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 98, 212
Eco88I CYCGRG 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 1 cut(s) 500
FaiI YATR 4 cut(s) 207, 406, 498, 510
FaqI GGGAC 1 cut(s) 43
FatI CATG 1 cut(s) 496
FokI GGATG 1 cut(s) 525
FspBI CTAG 2 cut(s) 575, 595
GlaI GCGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 3 cut(s) 146, 573, 593
HapII CCGG 3 cut(s) 27, 74, 93
HhaI GCGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 500
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 3 cut(s) 244, 251, 517
HpaII CCGG 3 cut(s) 27, 74, 93
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 3 cut(s) 117, 231, 491
Hpy188III TCNNGA 3 cut(s) 214, 248, 473
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 122, 136, 271, 339, 470
HpyCH4III ACNGT 4 cut(s) 34, 131, 418, 583
HpyCH4V TGCA 2 cut(s) 173, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 179, 206
HpyF3I CTNAG 3 cut(s) 282, 333, 465
Hsp92II CATG 1 cut(s) 500
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 285, 531
LpnPI CCDG 9 cut(s) 40, 87, 106, 171, 227, 371, 385, 398, 549
MaeI CTAG 2 cut(s) 575, 595
MaeIII GTNAC 3 cut(s) 79, 107, 577
MalI GATC 2 cut(s) 287, 533
MbiI CCGCTC 1 cut(s) 61
MboI GATC 2 cut(s) 285, 531
MboII GAAGA 2 cut(s) 151, 321
MflI RGATCY 1 cut(s) 531
MluCI AATT 2 cut(s) 49, 561
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 4 cut(s) 79, 97, 335, 373
MseI TTAA 2 cut(s) 257, 390
MspI CCGG 3 cut(s) 27, 74, 93
MspR9I CCNGG 3 cut(s) 27, 28, 386
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 43, 179, 206
NciI CCSGG 2 cut(s) 27, 28
NdeII GATC 2 cut(s) 285, 531
NlaIII CATG 1 cut(s) 500
NlaIV GGNNCC 1 cut(s) 533
NmuCI GTSAC 1 cut(s) 79
PceI AGGCCT 1 cut(s) 146
PfeI GAWTC 3 cut(s) 244, 251, 517
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 533
PsuI RGATCY 1 cut(s) 531
RsaI GTAC 2 cut(s) 239, 307
RsaNI GTAC 2 cut(s) 238, 306
SaqAI TTAA 2 cut(s) 257, 390
Sau3AI GATC 2 cut(s) 285, 531
ScrFI CCNGG 3 cut(s) 27, 28, 386
SetI ASST 7 cut(s) 89, 114, 137, 263, 326, 390, 487
SfcI CTRYAG 1 cut(s) 417
SmaI CCCGGG 1 cut(s) 28
Sse9I AATT 2 cut(s) 49, 561
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 575, 595
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 25, 26, 384
TaaI ACNGT 4 cut(s) 34, 131, 418, 583
TaqI TCGA 4 cut(s) 54, 249, 340, 474
TasI AATT 2 cut(s) 49, 561
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 3 cut(s) 244, 251, 517
Tru1I TTAA 2 cut(s) 257, 390
Tru9I TTAA 2 cut(s) 257, 390
TscAI CASTG 2 cut(s) 202, 404
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 56
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 2 cut(s) 202, 404
XapI RAATTY 2 cut(s) 49, 561
XmaI CCCGGG 1 cut(s) 26
XspI CTAG 2 cut(s) 575, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.