Rmu_sc0001173.1_g000022

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001173.1
OG0000187
Physical Location & Seq
Forward (+)
84610 .. 85587
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001173.1_g000022.1.cds

Sequence Viewer

Length: 789 bp
atggggatgtttcacaacacttggaggattaatggaatgttgcaggtggaggaagcagaagggcagagggttcttttcacgttgtcggaccccactgataggattcgaatttggcatggtgcacaatgggggtataatcacgctccggtggctctagcatggtatgatggcgtcatgtcgatggagaaagtgcccatgaccatggtatcgtactggattactcttcaaggaatcccgccggagttccggtctgagcatgtcatgaccatgattgggtatacgctgggggattttcaggaaattgacaagaatgctaagaaggttgggaagctccggattagggttgagatcctgctgaacaaaccattgctattcaagtcgacgctagatgaagacgatgataaagctgaatggaccgttctgtggtcccagactacagtgctggaggctactgttgggggcttgcaggtgaaagaaaacatggcaaggtcaacctctagtactgctagcagaagcggggtcaatactagtataagggctaggttttctacttcgtgcccatcactggtgtttcggactccagatcctgttctgagtgtaggaactccggagcacttaactggcaagcgtcagggtcgagaagacagcctaactatctccccaaaaaagttgaaattgagtttggatgtgggcaagaaaaatctcattcttgattatgaaaatcttggtctggatccggcattgcaggaggagaccaattctggtagcatgaaaaggaagcgagggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

262

Amino Acids

29.49

Weight (kDa)

8.56

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 34, 457
Acc36I ACCTGC 2 cut(s) 34, 457
AccI GTMKAC 2 cut(s) 278, 380
AccIII TCCGGA 2 cut(s) 333, 607
AciI CCGC 2 cut(s) 236, 516
AclWI GGATC 4 cut(s) 343, 578, 728, 741
AcsI RAATTY 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 2 cut(s) 212, 502
AfiI CCNNNNNNNGG 5 cut(s) 99, 273, 340, 423, 565
AgsI TTSAA 3 cut(s) 227, 376, 673
AhlI ACTAGT 1 cut(s) 527
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 2 cut(s) 331, 407
AluI AGCT 2 cut(s) 331, 407
Alw21I GWGCWC 2 cut(s) 124, 615
Alw26I GTCTC 1 cut(s) 746
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 4 cut(s) 343, 578, 728, 741
AlwNI CAGNNNCTG 1 cut(s) 587
Aor13HI TCCGGA 2 cut(s) 333, 607
ApaLI GTGCAC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 108
AseI ATTAAT 1 cut(s) 30
AspS9I GGNCC 3 cut(s) 88, 414, 426
AsuHPI GGTGA 1 cut(s) 481
AsuII TTCGAA 1 cut(s) 106
AsuNHI GCTAGC 1 cut(s) 506
AvaII GGWCC 3 cut(s) 88, 414, 426
BaeGI GKGCMC 3 cut(s) 124, 195, 560
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BamHI GGATCC 1 cut(s) 733
BbsI GAAGAC 2 cut(s) 399, 648
Bbv12I GWGCWC 2 cut(s) 124, 615
BccI CCATC 3 cut(s) 161, 175, 568
BcoDI GTCTC 1 cut(s) 746
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 6 cut(s) 155, 386, 498, 507, 528, 540
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 2 cut(s) 34, 457
BmcAI AGTACT 1 cut(s) 502
Bme18I GGWCC 3 cut(s) 88, 414, 426
BmgT120I GGNCC 3 cut(s) 88, 414, 426
BmiI GGNNCC 3 cut(s) 90, 428, 735
BmtI GCTAGC 1 cut(s) 510
BpiI GAAGAC 2 cut(s) 399, 648
BpmI CTGGAG 2 cut(s) 464, 564
Bpu14I TTCGAA 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 4 cut(s) 145, 246, 333, 607
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 273, 340, 423, 565
Bse1I ACTGG 3 cut(s) 218, 570, 625
Bse3DI GCAATG 2 cut(s) 365, 740
BseAI TCCGGA 2 cut(s) 333, 607
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 12, 691
BseLI CCNNNNNNNGG 5 cut(s) 99, 273, 340, 423, 565
BseMI GCAATG 2 cut(s) 365, 740
BseMII CTCAG 2 cut(s) 243, 584
BseNI ACTGG 3 cut(s) 218, 570, 625
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 3 cut(s) 124, 195, 560
BseYI CCCAGC 1 cut(s) 283
BsiHKAI GWGCWC 2 cut(s) 124, 615
BsiSI CCGG 6 cut(s) 146, 239, 247, 334, 608, 737
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 5 cut(s) 99, 273, 340, 423, 565
BsmAI GTCTC 1 cut(s) 746
BsmFI GGGAC 1 cut(s) 412
BsmI GAATGC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 746
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 4 cut(s) 124, 195, 560, 615
Bsp13I TCCGGA 2 cut(s) 333, 607
Bsp143I GATC 3 cut(s) 348, 583, 733
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 2 cut(s) 236, 516
BspCNI CTCAG 2 cut(s) 244, 585
BspEI TCCGGA 2 cut(s) 333, 607
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 90, 428, 735
BspMI ACCTGC 2 cut(s) 34, 457
BspOI GCTAGC 1 cut(s) 510
BspPI GGATC 4 cut(s) 343, 578, 728, 741
BspT104I TTCGAA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 365, 740
BsrI ACTGG 3 cut(s) 218, 570, 625
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 348, 583, 733
BssNAI GTATAC 1 cut(s) 279
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 279
Bst4CI ACNGT 3 cut(s) 418, 439, 454
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 3 cut(s) 464, 508, 626
BstDEI CTNAG 3 cut(s) 252, 315, 593
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 12, 691
BstKTI GATC 3 cut(s) 351, 586, 736
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 3 cut(s) 348, 583, 733
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 3 cut(s) 124, 195, 560
BstV2I GAAGAC 2 cut(s) 399, 648
BstX2I RGATCY 3 cut(s) 348, 583, 733
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 3 cut(s) 348, 583, 733
BstZ17I GTATAC 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 12, 691
BtsIMutI CAGTG 3 cut(s) 93, 444, 563
BveI ACCTGC 2 cut(s) 34, 457
Cac8I GCNNGC 3 cut(s) 464, 508, 626
CaiI CAGNNNCTG 1 cut(s) 587
CciI TCATGA 1 cut(s) 261
Cfr13I GGNCC 3 cut(s) 88, 414, 426
CseI GACGC 3 cut(s) 160, 391, 617
Csp6I GTAC 2 cut(s) 211, 501
CviJI RGCY 7 cut(s) 152, 331, 407, 449, 462, 539, 648
CviKI_1 RGCY 7 cut(s) 152, 331, 407, 449, 462, 539, 648
CviQI GTAC 2 cut(s) 211, 501
DdeI CTNAG 3 cut(s) 252, 315, 593
DpnI GATC 3 cut(s) 350, 585, 735
DpnII GATC 3 cut(s) 348, 583, 733
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 746
Eco47I GGWCC 3 cut(s) 88, 414, 426
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaqI GGGAC 1 cut(s) 412
FauI CCCGC 2 cut(s) 243, 509
FblI GTMKAC 2 cut(s) 278, 380
FokI GGATG 2 cut(s) 19, 698
FspBI CTAG 6 cut(s) 155, 386, 498, 507, 528, 540
GsaI CCCAGC 1 cut(s) 287
GsuI CTGGAG 2 cut(s) 464, 564
HapII CCGG 6 cut(s) 146, 239, 247, 334, 608, 737
HgaI GACGC 3 cut(s) 160, 391, 617
Hin1I GRCGYC 1 cut(s) 171
HincII GTYRAC 2 cut(s) 381, 492
HindII GTYRAC 2 cut(s) 381, 492
HinfI GANTC 3 cut(s) 103, 231, 577
HpaII CCGG 6 cut(s) 146, 239, 247, 334, 608, 737
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 4 cut(s) 122, 279, 381, 492
Hpy188I TCNGA 4 cut(s) 88, 253, 576, 594
Hpy188III TCNNGA 8 cut(s) 262, 296, 334, 581, 608, 638, 710, 731
Hpy8I GTNNAC 4 cut(s) 122, 279, 381, 492
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 53, 313
HpyCH4III ACNGT 3 cut(s) 418, 439, 454
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 43, 122, 466, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 3 cut(s) 252, 315, 593
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 171
Kpn2I TCCGGA 2 cut(s) 333, 607
Kzo9I GATC 3 cut(s) 348, 583, 733
LmnI GCTCC 3 cut(s) 148, 336, 610
MaeI CTAG 6 cut(s) 155, 386, 498, 507, 528, 540
MaeII ACGT 1 cut(s) 80
MalI GATC 3 cut(s) 350, 585, 735
MboI GATC 3 cut(s) 348, 583, 733
MboII GAAGA 3 cut(s) 215, 404, 653
MflI RGATCY 3 cut(s) 348, 583, 733
MhlI GDGCHC 4 cut(s) 124, 195, 560, 615
MluCI AATT 4 cut(s) 108, 300, 674, 757
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 7 cut(s) 18, 43, 60, 439, 505, 742, 776
MroI TCCGGA 2 cut(s) 333, 607
MseI TTAA 2 cut(s) 30, 617
MslI CAYNNNNRTG 3 cut(s) 179, 200, 266
MspI CCGG 6 cut(s) 146, 239, 247, 334, 608, 737
Mva1269I GAATGC 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 201
NdeII GATC 3 cut(s) 348, 583, 733
NheI GCTAGC 1 cut(s) 506
NlaIV GGNNCC 3 cut(s) 90, 428, 735
NspI RCATGY 1 cut(s) 260
NspV TTCGAA 1 cut(s) 106
PagI TCATGA 1 cut(s) 261
PaqCI CACCTGC 2 cut(s) 34, 457
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 103, 231
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
PshBI ATTAAT 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 90, 428, 735
PspPI GGNCC 3 cut(s) 88, 414, 426
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 3 cut(s) 348, 583, 733
RsaI GTAC 2 cut(s) 212, 502
RsaNI GTAC 2 cut(s) 211, 501
RseI CAYNNNNRTG 3 cut(s) 179, 200, 266
SalI GTCGAC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 30, 617
Sau3AI GATC 3 cut(s) 348, 583, 733
Sau96I GGNCC 3 cut(s) 88, 414, 426
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 1 cut(s) 571
SduI GDGCHC 4 cut(s) 124, 195, 560, 615
SetI ASST 9 cut(s) 48, 83, 324, 333, 409, 471, 491, 497, 545
SfcI CTRYAG 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 3 cut(s) 88, 414, 426
SmiMI CAYNNNNRTG 3 cut(s) 179, 200, 266
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 4 cut(s) 108, 300, 674, 757
SsiI CCGC 2 cut(s) 236, 516
SspMI CTAG 6 cut(s) 155, 386, 498, 507, 528, 540
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 418, 439, 454
TaiI ACGT 1 cut(s) 83
TaqI TCGA 4 cut(s) 106, 179, 380, 637
TasI AATT 4 cut(s) 108, 300, 674, 757
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 2 cut(s) 103, 231
Tru1I TTAA 2 cut(s) 30, 617
Tru9I TTAA 2 cut(s) 30, 617
TscAI CASTG 3 cut(s) 100, 444, 570
TspDTI ATGAA 3 cut(s) 405, 732, 785
TspRI CASTG 3 cut(s) 100, 444, 570
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 3 cut(s) 88, 414, 426
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 1 cut(s) 108
XceI RCATGY 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 278, 380
XspI CTAG 6 cut(s) 155, 386, 498, 507, 528, 540
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.