ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 82 |
| Acc36I | ACCTGC | 1 cut(s) | 82 |
| AciI | CCGC | 4 cut(s) | 73, 177, 401, 627 |
| AclWI | GGATC | 3 cut(s) | 36, 91, 125 |
| AcsI | RAATTY | 1 cut(s) | 396 |
| AcuI | CTGAAG | 1 cut(s) | 257 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 51, 426 |
| AgsI | TTSAA | 3 cut(s) | 34, 144, 424 |
| AluBI | AGCT | 2 cut(s) | 13, 605 |
| AluI | AGCT | 2 cut(s) | 13, 605 |
| AlwI | GGATC | 3 cut(s) | 36, 91, 125 |
| Ama87I | CYCGRG | 1 cut(s) | 538 |
| AoxI | GGCC | 3 cut(s) | 369, 526, 542 |
| ApeKI | GCWGC | 1 cut(s) | 605 |
| ApoI | RAATTY | 1 cut(s) | 396 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 470, 502 |
| AspA2I | CCTAGG | 1 cut(s) | 49 |
| AspLEI | GCGC | 1 cut(s) | 170 |
| AspS9I | GGNCC | 1 cut(s) | 238 |
| AsuHPI | GGTGA | 3 cut(s) | 319, 526, 628 |
| AvaI | CYCGRG | 1 cut(s) | 538 |
| AvaII | GGWCC | 1 cut(s) | 238 |
| AvrII | CCTAGG | 1 cut(s) | 49 |
| BaeGI | GKGCMC | 1 cut(s) | 595 |
| BbvI | GCAGC | 1 cut(s) | 592 |
| BccI | CCATC | 1 cut(s) | 613 |
| BceAI | ACGGC | 1 cut(s) | 232 |
| BclI | TGATCA | 2 cut(s) | 123, 405 |
| BfaI | CTAG | 2 cut(s) | 50, 634 |
| BfmI | CTRYAG | 2 cut(s) | 89, 606 |
| BfoI | RGCGCY | 1 cut(s) | 171 |
| BfuAI | ACCTGC | 1 cut(s) | 82 |
| BisI | GCNGC | 1 cut(s) | 606 |
| BlnI | CCTAGG | 1 cut(s) | 49 |
| BlsI | GCNGC | 1 cut(s) | 607 |
| Bme18I | GGWCC | 1 cut(s) | 238 |
| BmeT110I | CYCGRG | 1 cut(s) | 538 |
| BmgT120I | GGNCC | 1 cut(s) | 238 |
| BmiI | GGNNCC | 1 cut(s) | 240 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 268, 300 |
| BpuEI | CTTGAG | 1 cut(s) | 9 |
| BsaBI | GATNNNNATC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 3 cut(s) | 49, 249, 331 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 51, 426 |
| Bse118I | RCCGGY | 1 cut(s) | 371 |
| Bse1I | ACTGG | 3 cut(s) | 198, 266, 389 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| Bse8I | GATNNNNATC | 1 cut(s) | 122 |
| BseDI | CCNNGG | 3 cut(s) | 49, 249, 331 |
| BseGI | GGATG | 2 cut(s) | 60, 571 |
| BseJI | GATNNNNATC | 1 cut(s) | 122 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 51, 426 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseNI | ACTGG | 3 cut(s) | 198, 266, 389 |
| BseRI | GAGGAG | 1 cut(s) | 113 |
| BseSI | GKGCMC | 1 cut(s) | 595 |
| BseXI | GCAGC | 1 cut(s) | 592 |
| BseYI | CCCAGC | 1 cut(s) | 359 |
| BshFI | GGCC | 3 cut(s) | 371, 528, 544 |
| BsiHKCI | CYCGRG | 1 cut(s) | 538 |
| BsiSI | CCGG | 1 cut(s) | 372 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 51, 426 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsnI | GGCC | 3 cut(s) | 371, 528, 544 |
| BsoBI | CYCGRG | 1 cut(s) | 538 |
| Bsp1286I | GDGCHC | 1 cut(s) | 595 |
| Bsp143I | GATC | 5 cut(s) | 41, 83, 117, 123, 405 |
| Bsp19I | CCATGG | 1 cut(s) | 249 |
| BspACI | CCGC | 4 cut(s) | 73, 177, 401, 627 |
| BspANI | GGCC | 3 cut(s) | 371, 528, 544 |
| BspLI | GGNNCC | 1 cut(s) | 240 |
| BspMAI | CTGCAG | 2 cut(s) | 93, 610 |
| BspMI | ACCTGC | 1 cut(s) | 82 |
| BspPI | GGATC | 3 cut(s) | 36, 91, 125 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BsrFI | RCCGGY | 1 cut(s) | 371 |
| BsrI | ACTGG | 3 cut(s) | 198, 266, 389 |
| BssAI | RCCGGY | 1 cut(s) | 371 |
| BssECI | CCNNGG | 3 cut(s) | 49, 249, 331 |
| BssMI | GATC | 5 cut(s) | 41, 83, 117, 123, 405 |
| BssT1I | CCWWGG | 3 cut(s) | 49, 249, 331 |
| Bst4CI | ACNGT | 3 cut(s) | 132, 486, 583 |
| Bst6I | CTCTTC | 1 cut(s) | 276 |
| BstC8I | GCNNGC | 4 cut(s) | 208, 373, 530, 625 |
| BstDSI | CCRYGG | 1 cut(s) | 249 |
| BstF5I | GGATG | 2 cut(s) | 60, 571 |
| BstH2I | RGCGCY | 1 cut(s) | 171 |
| BstHHI | GCGC | 1 cut(s) | 170 |
| BstKTI | GATC | 5 cut(s) | 44, 86, 120, 126, 408 |
| BstMBI | GATC | 5 cut(s) | 41, 83, 117, 123, 405 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 174, 216, 381, 409, 534 |
| BstSFI | CTRYAG | 2 cut(s) | 89, 606 |
| BstSLI | GKGCMC | 1 cut(s) | 595 |
| BstV1I | GCAGC | 1 cut(s) | 592 |
| BstX2I | RGATCY | 3 cut(s) | 41, 83, 117 |
| BstYI | RGATCY | 3 cut(s) | 41, 83, 117 |
| BsuRI | GGCC | 3 cut(s) | 371, 528, 544 |
| BtgI | CCRYGG | 1 cut(s) | 249 |
| BtsCI | GGATG | 2 cut(s) | 60, 571 |
| BtsI | GCAGTG | 2 cut(s) | 18, 615 |
| BtsIMutI | CAGTG | 5 cut(s) | 18, 128, 191, 396, 615 |
| BveI | ACCTGC | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 4 cut(s) | 208, 373, 530, 625 |
| CfoI | GCGC | 1 cut(s) | 170 |
| Cfr10I | RCCGGY | 1 cut(s) | 371 |
| Cfr13I | GGNCC | 1 cut(s) | 238 |
| CviAII | CATG | 3 cut(s) | 174, 250, 521 |
| DpnI | GATC | 5 cut(s) | 43, 85, 119, 125, 407 |
| DpnII | GATC | 5 cut(s) | 41, 83, 117, 123, 405 |
| DraI | TTTAAA | 1 cut(s) | 472 |
| Eam1104I | CTCTTC | 1 cut(s) | 276 |
| EarI | CTCTTC | 1 cut(s) | 276 |
| EciI | GGCGGA | 1 cut(s) | 88 |
| Eco130I | CCWWGG | 3 cut(s) | 49, 249, 331 |
| Eco47I | GGWCC | 1 cut(s) | 238 |
| Eco57I | CTGAAG | 1 cut(s) | 257 |
| Eco88I | CYCGRG | 1 cut(s) | 538 |
| EcoO109I | RGGNCCY | 1 cut(s) | 238 |
| EcoT14I | CCWWGG | 3 cut(s) | 49, 249, 331 |
| ErhI | CCWWGG | 3 cut(s) | 49, 249, 331 |
| FaeI | CATG | 3 cut(s) | 177, 253, 524 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| FatI | CATG | 3 cut(s) | 173, 249, 520 |
| FauI | CCCGC | 1 cut(s) | 170 |
| FbaI | TGATCA | 2 cut(s) | 123, 405 |
| Fnu4HI | GCNGC | 1 cut(s) | 606 |
| FokI | GGATG | 2 cut(s) | 67, 578 |
| Fsp4HI | GCNGC | 1 cut(s) | 606 |
| FspBI | CTAG | 2 cut(s) | 50, 634 |
| GlaI | GCGC | 1 cut(s) | 169 |
| GluI | GCNGC | 1 cut(s) | 606 |
| GsaI | CCCAGC | 1 cut(s) | 363 |
| HaeII | RGCGCY | 1 cut(s) | 171 |
| HaeIII | GGCC | 3 cut(s) | 371, 528, 544 |
| HapII | CCGG | 1 cut(s) | 372 |
| HhaI | GCGC | 1 cut(s) | 170 |
| Hin1II | CATG | 3 cut(s) | 177, 253, 524 |
| Hin6I | GCGC | 1 cut(s) | 168 |
| HinP1I | GCGC | 1 cut(s) | 168 |
| HinfI | GANTC | 2 cut(s) | 136, 517 |
| HpaII | CCGG | 1 cut(s) | 372 |
| HphI | GGTGA | 3 cut(s) | 319, 526, 628 |
| Hpy188I | TCNGA | 3 cut(s) | 41, 276, 301 |
| Hpy188III | TCNNGA | 4 cut(s) | 7, 26, 121, 344 |
| HpyAV | CCTTC | 5 cut(s) | 55, 150, 157, 229, 430 |
| HpyCH4III | ACNGT | 3 cut(s) | 132, 486, 583 |
| HpyCH4V | TGCA | 3 cut(s) | 63, 91, 608 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 174, 216, 381, 409, 534 |
| Hsp92II | CATG | 3 cut(s) | 177, 253, 524 |
| HspAI | GCGC | 1 cut(s) | 168 |
| KroI | GCCGGC | 1 cut(s) | 371 |
| KroNI | GCCGGC | 1 cut(s) | 373 |
| Ksp22I | TGATCA | 2 cut(s) | 123, 405 |
| Kzo9I | GATC | 5 cut(s) | 41, 83, 117, 123, 405 |
| LmnI | GCTCC | 1 cut(s) | 175 |
| Lsp1109I | GCAGC | 1 cut(s) | 592 |
| MaeI | CTAG | 2 cut(s) | 50, 634 |
| MaeIII | GTNAC | 2 cut(s) | 323, 514 |
| MalI | GATC | 5 cut(s) | 43, 85, 119, 125, 407 |
| MboI | GATC | 5 cut(s) | 41, 83, 117, 123, 405 |
| MboII | GAAGA | 2 cut(s) | 263, 569 |
| MflI | RGATCY | 3 cut(s) | 41, 83, 117 |
| MhlI | GDGCHC | 1 cut(s) | 595 |
| MluCI | AATT | 1 cut(s) | 396 |
| MlyI | GAGTC | 1 cut(s) | 511 |
| MroNI | GCCGGC | 1 cut(s) | 371 |
| MseI | TTAA | 1 cut(s) | 471 |
| MslI | CAYNNNNRTG | 1 cut(s) | 389 |
| MspA1I | CMGCKG | 2 cut(s) | 403, 605 |
| MspI | CCGG | 1 cut(s) | 372 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 174, 216, 381, 409, 534 |
| NaeI | GCCGGC | 1 cut(s) | 373 |
| NcoI | CCATGG | 1 cut(s) | 249 |
| NdeII | GATC | 5 cut(s) | 41, 83, 117, 123, 405 |
| NgoMIV | GCCGGC | 1 cut(s) | 371 |
| NlaIII | CATG | 3 cut(s) | 177, 253, 524 |
| NlaIV | GGNNCC | 1 cut(s) | 240 |
| NmuCI | GTSAC | 1 cut(s) | 514 |
| PaeR7I | CTCGAG | 1 cut(s) | 538 |
| PaqCI | CACCTGC | 1 cut(s) | 82 |
| PdiI | GCCGGC | 1 cut(s) | 373 |
| PfeI | GAWTC | 1 cut(s) | 136 |
| PkrI | GCNGC | 1 cut(s) | 607 |
| PleI | GAGTC | 1 cut(s) | 511 |
| PpsI | GAGTC | 1 cut(s) | 511 |
| PpuMI | RGGWCCY | 1 cut(s) | 238 |
| Psp5II | RGGWCCY | 1 cut(s) | 238 |
| PspFI | CCCAGC | 1 cut(s) | 359 |
| PspN4I | GGNNCC | 1 cut(s) | 240 |
| PspPI | GGNCC | 1 cut(s) | 238 |
| PspPPI | RGGWCCY | 1 cut(s) | 238 |
| PspXI | VCTCGAGB | 1 cut(s) | 538 |
| PstI | CTGCAG | 2 cut(s) | 93, 610 |
| PsuI | RGATCY | 3 cut(s) | 41, 83, 117 |
| PvuII | CAGCTG | 1 cut(s) | 605 |
| RseI | CAYNNNNRTG | 1 cut(s) | 389 |
| SaqAI | TTAA | 1 cut(s) | 471 |
| SatI | GCNGC | 1 cut(s) | 606 |
| Sau3AI | GATC | 5 cut(s) | 41, 83, 117, 123, 405 |
| Sau96I | GGNCC | 1 cut(s) | 238 |
| SchI | GAGTC | 1 cut(s) | 511 |
| SduI | GDGCHC | 1 cut(s) | 595 |
| SetI | ASST | 7 cut(s) | 15, 96, 229, 240, 325, 453, 607 |
| SfcI | CTRYAG | 2 cut(s) | 89, 606 |
| Sfr274I | CTCGAG | 1 cut(s) | 538 |
| SinI | GGWCC | 1 cut(s) | 238 |
| SlaI | CTCGAG | 1 cut(s) | 538 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 389 |
| SmlI | CTYRAG | 2 cut(s) | 24, 538 |
| SmoI | CTYRAG | 2 cut(s) | 24, 538 |
| Sse9I | AATT | 1 cut(s) | 396 |
| SsiI | CCGC | 4 cut(s) | 73, 177, 401, 627 |
| SspMI | CTAG | 2 cut(s) | 50, 634 |
| StyI | CCWWGG | 3 cut(s) | 49, 249, 331 |
| TaaI | ACNGT | 3 cut(s) | 132, 486, 583 |
| TaqI | TCGA | 2 cut(s) | 134, 539 |
| TasI | AATT | 1 cut(s) | 396 |
| TfiI | GAWTC | 1 cut(s) | 136 |
| Tru1I | TTAA | 1 cut(s) | 471 |
| Tru9I | TTAA | 1 cut(s) | 471 |
| TscAI | CASTG | 5 cut(s) | 25, 135, 198, 396, 615 |
| TseFI | GTSAC | 1 cut(s) | 514 |
| TseI | GCWGC | 1 cut(s) | 605 |
| Tsp45I | GTSAC | 1 cut(s) | 514 |
| TspDTI | ATGAA | 2 cut(s) | 246, 283 |
| TspRI | CASTG | 5 cut(s) | 25, 135, 198, 396, 615 |
| VpaK11BI | GGWCC | 1 cut(s) | 238 |
| XapI | RAATTY | 1 cut(s) | 396 |
| XhoI | CTCGAG | 1 cut(s) | 538 |
| XmaJI | CCTAGG | 1 cut(s) | 49 |
| XspI | CTAG | 2 cut(s) | 50, 634 |