Rmu_sc0000890.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000890.1
OG0000187
Physical Location & Seq
Forward (+)
16261 .. 17559
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000890.1_g000007.1.cds

Sequence Viewer

Length: 1257 bp
atgagttccgttgatgccatggctgctaggctcgcatcctcgcttgctattgctgagggtaagaaacaggtggatctctggcctacacaaggccaaggtctacggcaatctgaggtgtttatggtggggaagctactcactgctcgagattttaagatccggtcctttctagggatgttccgcaatgcatggcggacgaatggatctcttcaggatccttcagatcgggtttgtatttggaagggcgctccatggggatacaaccatgctccggtggcgctggcttgctatgatggagttacaccggtagaacaggtccctctgaccttggcttcatattggataactctccaaggtattcctcctgctttcagatcagaaagggtaatgactatgattggttacaccctaggggactttcaggatatcgacaagattgcaaagaaagccggaaaacttcgcatccgggtagagatcccgttgatcaagccgctgcccttcaaacggtggtactgggtggaggacgaggtcgagttcttgtgtaagtttaaatatgacaagttgtttggtcgctgctctacctgtggtttggtgactcatgtcggcctcccttgttcggggccggctttggaggaagatgaggatggggcagagaggactgttttgggggcacaccatgcaactacaacaccggtgatggctggcggtttgcaactgcacacgggggcttccagttcagggccgtctgctgcaggtaattcggggttgcaagctagggttttgactcgtggtcaaactctagttttcaagactcctattccaagttcaacttcggagccagctttgagttccttcttgaatagacctcgacatcaagtggtggttagagagttgcaagcaactgctatgacattggaaaggcttacggggaagcgtagaggtcgctctgatgctggagagactatatctccaaagaaactgaaacttagcttggctgtgggcaagcgtaatatgaatttggagccggaaagccttggcttggttcctctgctggaggaaggtggctcaggtagtggaaagaggaagcgtggacgccctatgggtagcaggaacaaactgccatatggagaaaagaagaaaggtgtagcgcctggtgaggctactaaagagaaaaaaacctccaagaaggacaaagtgaagaggatatccgatggtatgagctccaactcgaaagggaaggagctagttatttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

418

Amino Acids

45.64

Weight (kDa)

9.84

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 743
AccI GTMKAC 1 cut(s) 100
AciI CCGC 4 cut(s) 181, 193, 491, 705
AclWI GGATC 6 cut(s) 81, 151, 209, 211, 222, 469
AcsI RAATTY 1 cut(s) 1015
AcuI CTGAAG 2 cut(s) 194, 204
AcyI GRCGYC 1 cut(s) 1093
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 8 cut(s) 89, 171, 271, 504, 616, 617, 738, 1039
AgeI ACCGGT 2 cut(s) 304, 691
AgsI TTSAA 4 cut(s) 502, 808, 828, 859
AhdI GACNNNNNGTC 1 cut(s) 789
AjnI CCWGG 1 cut(s) 1150
AjuI GAANNNNNNNTTGG 4 cut(s) 814, 846, 974, 1006
AluBI AGCT 6 cut(s) 133, 773, 842, 990, 1221, 1243
AluI AGCT 6 cut(s) 133, 773, 842, 990, 1221, 1243
Alw21I GWGCWC 1 cut(s) 1223
Alw26I GTCTC 1 cut(s) 953
AlwI GGATC 6 cut(s) 81, 151, 209, 211, 222, 469
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 5 cut(s) 80, 91, 604, 620, 740
ApeKI GCWGC 4 cut(s) 23, 493, 573, 749
ApoI RAATTY 1 cut(s) 1015
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AsiGI ACCGGT 2 cut(s) 304, 691
AspA2I CCTAGG 1 cut(s) 409
AspLEI GCGC 3 cut(s) 248, 280, 1150
AspS9I GGNCC 4 cut(s) 162, 316, 620, 740
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 3 cut(s) 604, 706, 1166
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 2 cut(s) 162, 316
AvrII CCTAGG 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 673
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 1223
BauI CACGAG 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 1223
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 10, 480, 560, 736
BccI CCATC 4 cut(s) 287, 638, 691, 1205
BceAI ACGGC 2 cut(s) 119, 727
BcgI CGANNNNNNTGC 4 cut(s) 419, 453, 741, 775
BciT130I CCWGG 1 cut(s) 1152
BciVI GTATCC 1 cut(s) 251
BclI TGATCA 1 cut(s) 483
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 953
BfaI CTAG 6 cut(s) 27, 170, 410, 774, 800, 1244
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 3 cut(s) 249, 281, 1151
BfuAI ACCTGC 1 cut(s) 743
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 5 cut(s) 24, 491, 494, 574, 750
BlnI CCTAGG 1 cut(s) 409
BlsI GCNGC 5 cut(s) 25, 492, 495, 575, 751
Bme1390I CCNGG 2 cut(s) 467, 1152
Bme18I GGWCC 2 cut(s) 162, 316
BmeRI GACNNNNNGTC 1 cut(s) 789
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 4 cut(s) 162, 316, 620, 740
BmiI GGNNCC 6 cut(s) 216, 318, 621, 837, 1023, 1044
BmrFI CCNGG 2 cut(s) 467, 1152
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 4 cut(s) 4, 44, 471, 940
BmuI ACTGGG 1 cut(s) 523
BoxI GACNNNNGTC 1 cut(s) 599
BpmI CTGGAG 2 cut(s) 975, 1073
Bpu10I CCTNAGC 2 cut(s) 54, 1066
BpuMI CCSGG 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 1093
BsaJI CCNNGG 7 cut(s) 18, 94, 251, 327, 352, 409, 1033
BsaWI WCCGGW 4 cut(s) 159, 271, 304, 691
BsaXI ACNNNNNCTCC 2 cut(s) 952, 982
Bsc4I CCNNNNNNNGG 8 cut(s) 89, 171, 271, 504, 616, 617, 738, 1039
Bse118I RCCGGY 3 cut(s) 304, 622, 691
Bse1I ACTGG 2 cut(s) 518, 732
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 1152
BseDI CCNNGG 7 cut(s) 18, 94, 251, 327, 352, 409, 1033
BseGI GGATG 4 cut(s) 35, 180, 462, 649
BseLI CCNNNNNNNGG 8 cut(s) 89, 171, 271, 504, 616, 617, 738, 1039
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 3 cut(s) 45, 102, 1080
BseNI ACTGG 2 cut(s) 518, 732
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 4 cut(s) 10, 480, 560, 736
BsgI GTGCAG 1 cut(s) 701
BshFI GGCC 5 cut(s) 82, 93, 606, 622, 742
BshTI ACCGGT 2 cut(s) 304, 691
BsiHKAI GWGCWC 1 cut(s) 1223
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 8 cut(s) 160, 272, 305, 450, 466, 623, 692, 1025
BslFI GGGAC 2 cut(s) 302, 428
BslI CCNNNNNNNGG 8 cut(s) 89, 171, 271, 504, 616, 617, 738, 1039
BsmAI GTCTC 1 cut(s) 953
BsmFI GGGAC 2 cut(s) 302, 428
BsnI GGCC 5 cut(s) 82, 93, 606, 622, 742
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 673, 1223
Bsp143I GATC 8 cut(s) 73, 156, 203, 214, 223, 374, 474, 483
Bsp19I CCATGG 2 cut(s) 18, 251
BspACI CCGC 4 cut(s) 181, 193, 491, 705
BspANI GGCC 5 cut(s) 82, 93, 606, 622, 742
BspCNI CTCAG 3 cut(s) 46, 103, 1079
BspLI GGNNCC 6 cut(s) 216, 318, 621, 837, 1023, 1044
BspMAI CTGCAG 1 cut(s) 754
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 6 cut(s) 81, 151, 209, 211, 222, 469
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 3 cut(s) 304, 622, 691
BsrI ACTGG 2 cut(s) 518, 732
BssAI RCCGGY 3 cut(s) 304, 622, 691
BssECI CCNNGG 7 cut(s) 18, 94, 251, 327, 352, 409, 1033
BssMI GATC 8 cut(s) 73, 156, 203, 214, 223, 374, 474, 483
BssNI GRCGYC 1 cut(s) 1093
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 7 cut(s) 18, 94, 251, 327, 352, 409, 1033
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 1 cut(s) 1152
Bst4CI ACNGT 2 cut(s) 507, 661
Bst6I CTCTTC 2 cut(s) 213, 1193
BstACI GRCGYC 1 cut(s) 1093
BstAPI GCANNNNNTGC 1 cut(s) 677
BstDEI CTNAG 4 cut(s) 54, 111, 986, 1066
BstDSI CCRYGG 2 cut(s) 18, 251
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 4 cut(s) 35, 180, 462, 649
BstH2I RGCGCY 3 cut(s) 249, 281, 1151
BstHHI GCGC 3 cut(s) 248, 280, 1150
BstKTI GATC 8 cut(s) 76, 159, 206, 217, 226, 377, 477, 486
BstMAI GTCTC 1 cut(s) 953
BstMBI GATC 8 cut(s) 73, 156, 203, 214, 223, 374, 474, 483
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 275, 446, 677
BstNI CCWGG 1 cut(s) 1152
BstPAI GACNNNNGTC 1 cut(s) 599
BstSCI CCNGG 2 cut(s) 465, 1150
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 673
BstV1I GCAGC 4 cut(s) 10, 480, 560, 736
BstX2I RGATCY 5 cut(s) 73, 156, 203, 214, 474
BstYI RGATCY 5 cut(s) 73, 156, 203, 214, 474
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 5 cut(s) 82, 93, 606, 622, 742
BtgI CCRYGG 2 cut(s) 18, 251
BtsCI GGATG 4 cut(s) 35, 180, 462, 649
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 743
CfoI GCGC 3 cut(s) 248, 280, 1150
Cfr10I RCCGGY 3 cut(s) 304, 622, 691
Cfr13I GGNCC 4 cut(s) 162, 316, 620, 740
CseI GACGC 1 cut(s) 1101
Csp6I GTAC 1 cut(s) 511
CspAI ACCGGT 2 cut(s) 304, 691
CviAII CATG 6 cut(s) 19, 189, 252, 266, 599, 677
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 4 cut(s) 54, 111, 986, 1066
DpnI GATC 8 cut(s) 75, 158, 205, 216, 225, 376, 476, 485
DpnII GATC 8 cut(s) 73, 156, 203, 214, 223, 374, 474, 483
DraI TTTAAA 1 cut(s) 550
DriI GACNNNNNGTC 1 cut(s) 789
Eam1104I CTCTTC 2 cut(s) 213, 1193
Eam1105I GACNNNNNGTC 1 cut(s) 789
EarI CTCTTC 2 cut(s) 213, 1193
EciI GGCGGA 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 1221
Eco130I CCWWGG 7 cut(s) 18, 94, 251, 327, 352, 409, 1033
Eco24I GRGCYC 1 cut(s) 1223
Eco32I GATATC 2 cut(s) 427, 1206
Eco47I GGWCC 2 cut(s) 162, 316
Eco53kI GAGCTC 1 cut(s) 1221
Eco57I CTGAAG 2 cut(s) 194, 204
Eco88I CYCGRG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 1221
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 1150
EcoRV GATATC 2 cut(s) 427, 1206
EcoT14I CCWWGG 7 cut(s) 18, 94, 251, 327, 352, 409, 1033
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 1223
ErhI CCWWGG 7 cut(s) 18, 94, 251, 327, 352, 409, 1033
FaeI CATG 6 cut(s) 22, 192, 255, 269, 602, 680
FalI AAGNNNNNCTT 2 cut(s) 814, 846
FaqI GGGAC 2 cut(s) 302, 428
FatI CATG 6 cut(s) 18, 188, 251, 265, 598, 676
FauNDI CATATG 1 cut(s) 1123
FbaI TGATCA 1 cut(s) 483
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 5 cut(s) 24, 491, 494, 574, 750
FokI GGATG 4 cut(s) 22, 187, 449, 656
FriOI GRGCYC 1 cut(s) 1223
Fsp4HI GCNGC 5 cut(s) 24, 491, 494, 574, 750
FspBI CTAG 6 cut(s) 27, 170, 410, 774, 800, 1244
GlaI GCGC 3 cut(s) 247, 279, 1149
GluI GCNGC 5 cut(s) 24, 491, 494, 574, 750
GsuI CTGGAG 2 cut(s) 975, 1073
HaeII RGCGCY 3 cut(s) 249, 281, 1151
HaeIII GGCC 5 cut(s) 82, 93, 606, 622, 742
HapII CCGG 8 cut(s) 160, 272, 305, 450, 466, 623, 692, 1025
HgaI GACGC 1 cut(s) 1101
HhaI GCGC 3 cut(s) 248, 280, 1150
Hin1I GRCGYC 1 cut(s) 1093
Hin1II CATG 6 cut(s) 22, 192, 255, 269, 602, 680
Hin6I GCGC 3 cut(s) 246, 278, 1148
HinP1I GCGC 3 cut(s) 246, 278, 1148
HinfI GANTC 3 cut(s) 595, 784, 811
HpaII CCGG 8 cut(s) 160, 272, 305, 450, 466, 623, 692, 1025
HphI GGTGA 3 cut(s) 604, 706, 1166
Hpy166II GTNNAC 2 cut(s) 101, 1091
Hpy188I TCNGA 8 cut(s) 112, 223, 324, 374, 379, 835, 949, 1210
Hpy188III TCNNGA 5 cut(s) 146, 212, 422, 808, 856
Hpy8I GTNNAC 2 cut(s) 101, 1091
HpyAV CCTTC 7 cut(s) 228, 235, 508, 862, 1052, 1180, 1231
HpyCH4III ACNGT 2 cut(s) 507, 661
HpyCH4V TGCA 8 cut(s) 188, 440, 680, 712, 718, 752, 769, 895
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 275, 446, 677
HpyF3I CTNAG 4 cut(s) 54, 111, 986, 1066
Hsp92I GRCGYC 1 cut(s) 1093
Hsp92II CATG 6 cut(s) 22, 192, 255, 269, 602, 680
HspAI GCGC 3 cut(s) 246, 278, 1148
KroI GCCGGC 1 cut(s) 622
KroNI GCCGGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 8 cut(s) 73, 156, 203, 214, 223, 374, 474, 483
LmnI GCTCC 6 cut(s) 253, 274, 835, 1021, 1226, 1240
Lsp1109I GCAGC 4 cut(s) 10, 480, 560, 736
LweI GCATC 4 cut(s) 4, 44, 471, 940
MaeI CTAG 6 cut(s) 27, 170, 410, 774, 800, 1244
MaeIII GTNAC 3 cut(s) 298, 401, 592
MalI GATC 8 cut(s) 75, 158, 205, 216, 225, 376, 476, 485
MboI GATC 8 cut(s) 73, 156, 203, 214, 223, 374, 474, 483
MboII GAAGA 4 cut(s) 200, 647, 1147, 1210
MflI RGATCY 5 cut(s) 73, 156, 203, 214, 474
MhlI GDGCHC 2 cut(s) 673, 1223
MluCI AATT 2 cut(s) 757, 1015
MlyI GAGTC 3 cut(s) 589, 778, 805
MmeI TCCRAC 1 cut(s) 1248
Mph1103I ATGCAT 1 cut(s) 190
MroNI GCCGGC 1 cut(s) 622
MseI TTAA 2 cut(s) 153, 549
MspA1I CMGCKG 1 cut(s) 493
MspI CCGG 8 cut(s) 160, 272, 305, 450, 466, 623, 692, 1025
MspR9I CCNGG 2 cut(s) 467, 1152
MvaI CCWGG 1 cut(s) 1152
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 275, 446, 677
NaeI GCCGGC 1 cut(s) 624
NciI CCSGG 1 cut(s) 467
NcoI CCATGG 2 cut(s) 18, 251
NdeI CATATG 1 cut(s) 1123
NdeII GATC 8 cut(s) 73, 156, 203, 214, 223, 374, 474, 483
NgoMIV GCCGGC 1 cut(s) 622
NlaIII CATG 6 cut(s) 22, 192, 255, 269, 602, 680
NlaIV GGNNCC 6 cut(s) 216, 318, 621, 837, 1023, 1044
NmuCI GTSAC 1 cut(s) 592
NsiI ATGCAT 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 624
PflFI GACNNNGTC 1 cut(s) 527
PinAI ACCGGT 2 cut(s) 304, 691
PkrI GCNGC 5 cut(s) 25, 492, 495, 575, 751
PleI GAGTC 3 cut(s) 589, 778, 805
PpsI GAGTC 3 cut(s) 589, 778, 805
PpuMI RGGWCCY 1 cut(s) 316
PshAI GACNNNNGTC 1 cut(s) 599
Psp124BI GAGCTC 1 cut(s) 1223
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 1150
PspGI CCWGG 1 cut(s) 1150
PspN4I GGNNCC 6 cut(s) 216, 318, 621, 837, 1023, 1044
PspPI GGNCC 4 cut(s) 162, 316, 620, 740
PspPPI RGGWCCY 1 cut(s) 316
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 5 cut(s) 73, 156, 203, 214, 474
PsyI GACNNNGTC 1 cut(s) 527
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SacI GAGCTC 1 cut(s) 1223
SaqAI TTAA 2 cut(s) 153, 549
SatI GCNGC 5 cut(s) 24, 491, 494, 574, 750
Sau3AI GATC 8 cut(s) 73, 156, 203, 214, 223, 374, 474, 483
Sau96I GGNCC 4 cut(s) 162, 316, 620, 740
SchI GAGTC 3 cut(s) 589, 778, 805
ScrFI CCNGG 2 cut(s) 467, 1152
SduI GDGCHC 2 cut(s) 673, 1223
SfaNI GCATC 4 cut(s) 4, 44, 471, 940
SfcI CTRYAG 1 cut(s) 750
Sfr274I CTCGAG 1 cut(s) 144
SgrAI CRCCGGYG 1 cut(s) 691
SinI GGWCC 2 cut(s) 162, 316
SlaI CTCGAG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 2 cut(s) 757, 1015
SsiI CCGC 4 cut(s) 181, 193, 491, 705
SspMI CTAG 6 cut(s) 27, 170, 410, 774, 800, 1244
SstI GAGCTC 1 cut(s) 1223
StyD4I CCNGG 2 cut(s) 465, 1150
StyI CCWWGG 7 cut(s) 18, 94, 251, 327, 352, 409, 1033
TaaI ACNGT 2 cut(s) 507, 661
TaqI TCGA 5 cut(s) 145, 429, 531, 868, 1229
TasI AATT 2 cut(s) 757, 1015
TauI GCSGC 1 cut(s) 493
Tru1I TTAA 2 cut(s) 153, 549
Tru9I TTAA 2 cut(s) 153, 549
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 4 cut(s) 23, 493, 573, 749
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 324, 1028
TspRI CASTG 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 162, 316
XagI CCTNNNNNAGG 1 cut(s) 87
XapI RAATTY 1 cut(s) 1015
XhoI CTCGAG 1 cut(s) 144
XmaJI CCTAGG 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 6 cut(s) 27, 170, 410, 774, 800, 1244
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.