Rmu_sc0003271.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003271.1
OG0000187
Physical Location & Seq
Forward (+)
47007 .. 47762
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003271.1_g000006.1.cds

Sequence Viewer

Length: 660 bp
atggttgctcggctggcttcttctctggccattgctgaggggaggaagcaggtcgacctgcgaccgacacaggagaagggtttgcggcaagcagatgtttttttggaagcggaggggaaaagggttcttgtcactctgtctgatgctacagatcaagatcgggtctggaaggcaggttcctgggattataatcacgctccaattgccctagcttactacgatggtgtgactgccattgaatcggtctccttcaccacatcgtcgtactggatcactttgcaaggcatcccccatgcgttccgttccaagagagtgatgactatgatcggctttactcttggtgattttaaggaaattgacaaacaggccaagaaggttggaaagcttagcatcagggtggagatcccttttaaccgaccattgtccttcaaacgatggtattgggtggaggataaagtcaagtttctctacaagtttaagtttgacaaactctttggtagatgctcagtttgtggtttggttactcacgtaggtctcccatgctcggggcctcctttggaagagaatgatgaggcagaatgcacggtcctagtaagtcacaggcgagtcaccttgctgcaccagagccacagcctgctgggcaacttatctcgaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

219

Amino Acids

24.79

Weight (kDa)

9.26

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
Acc36I ACCTGC 3 cut(s) 40, 66, 164
AccI GTMKAC 1 cut(s) 54
AciI CCGC 2 cut(s) 85, 110
AclWI GGATC 2 cut(s) 278, 397
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 544, 545
AgsI TTSAA 2 cut(s) 239, 430
AjnI CCWGG 1 cut(s) 179
AloI GAACNNNNNNTCC 2 cut(s) 160, 192
AluBI AGCT 2 cut(s) 212, 385
AluI AGCT 2 cut(s) 212, 385
Alw26I GTCTC 2 cut(s) 250, 539
AlwI GGATC 2 cut(s) 278, 397
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 3 cut(s) 27, 366, 548
ApeKI GCWGC 1 cut(s) 616
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AspS9I GGNCC 2 cut(s) 548, 586
AsuHPI GGTGA 3 cut(s) 244, 353, 601
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 1 cut(s) 586
BalI TGGCCA 1 cut(s) 29
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 603
BccI CCATC 2 cut(s) 215, 429
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 250, 539
BfaI CTAG 2 cut(s) 209, 590
BfmI CTRYAG 1 cut(s) 147
BfuAI ACCTGC 3 cut(s) 40, 66, 164
BglI GCCNNNNNGGC 1 cut(s) 639
BisI GCNGC 2 cut(s) 86, 617
BlpI GCTNAGC 1 cut(s) 386
BlsI GCNGC 2 cut(s) 87, 618
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 548, 586
BmiI GGNNCC 2 cut(s) 178, 549
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 4 cut(s) 133, 294, 399, 491
BoxI GACNNNNGTC 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 386
BsaAI YACGTR 1 cut(s) 529
BsaBI GATNNNNATC 2 cut(s) 156, 189
BsaI GGTCTC 2 cut(s) 250, 539
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 545
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 30
Bse8I GATNNNNATC 2 cut(s) 156, 189
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 285
BseJI GATNNNNATC 2 cut(s) 156, 189
BseLI CCNNNNNNNGG 2 cut(s) 544, 545
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 27, 519
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 603
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 602
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 3 cut(s) 29, 368, 550
BsiEI CGRYCG 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 544
BslI CCNNNNNNNGG 2 cut(s) 544, 545
BsmAI GTCTC 2 cut(s) 250, 539
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 3 cut(s) 29, 368, 550
Bso31I GGTCTC 2 cut(s) 250, 539
BsoBI CYCGRG 1 cut(s) 544
Bsp143I GATC 5 cut(s) 151, 157, 270, 324, 402
Bsp1720I GCTNAGC 1 cut(s) 386
BspACI CCGC 2 cut(s) 85, 110
BspANI GGCC 3 cut(s) 29, 368, 550
BspCNI CTCAG 2 cut(s) 28, 518
BspLI GGNNCC 2 cut(s) 178, 549
BspMI ACCTGC 3 cut(s) 40, 66, 164
BspPI GGATC 2 cut(s) 278, 397
BspTNI GGTCTC 2 cut(s) 250, 539
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 5 cut(s) 151, 157, 270, 324, 402
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 1 cut(s) 555
BstBAI YACGTR 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 15, 90, 635
BstDEI CTNAG 4 cut(s) 36, 386, 505, 657
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 5 cut(s) 154, 160, 273, 327, 405
BstMAI GTCTC 2 cut(s) 250, 539
BstMBI GATC 5 cut(s) 151, 157, 270, 324, 402
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 14, 203, 639
BstNI CCWGG 1 cut(s) 181
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 3 cut(s) 29, 368, 550
BtsCI GGATG 1 cut(s) 285
BveI ACCTGC 3 cut(s) 40, 66, 164
Cac8I GCNNGC 3 cut(s) 15, 90, 635
Cfr13I GGNCC 2 cut(s) 548, 586
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 293, 540
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 4 cut(s) 36, 386, 505, 657
DpnI GATC 5 cut(s) 153, 159, 272, 326, 404
DpnII GATC 5 cut(s) 151, 157, 270, 324, 402
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco31I GGTCTC 2 cut(s) 250, 539
Eco47I GGWCC 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 296, 543
FaiI YATR 4 cut(s) 189, 294, 323, 541
FatI CATG 2 cut(s) 292, 539
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 86, 617
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 86, 617
FspBI CTAG 2 cut(s) 209, 590
GluI GCNGC 2 cut(s) 86, 617
GsaI CCCAGC 1 cut(s) 641
HaeIII GGCC 3 cut(s) 29, 368, 550
Hin1II CATG 2 cut(s) 296, 543
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 2 cut(s) 239, 606
HphI GGTGA 3 cut(s) 244, 353, 601
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 155, 166, 651
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 5 cut(s) 70, 163, 259, 367, 436
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 280, 582, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 203, 639
HpyF3I CTNAG 4 cut(s) 36, 386, 505, 657
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 2 cut(s) 296, 543
Kzo9I GATC 5 cut(s) 151, 157, 270, 324, 402
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 4 cut(s) 133, 294, 399, 491
MaeI CTAG 2 cut(s) 209, 590
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 5 cut(s) 130, 226, 520, 596, 607
MalI GATC 5 cut(s) 153, 159, 272, 326, 404
MboI GATC 5 cut(s) 151, 157, 270, 324, 402
MboII GAAGA 2 cut(s) 12, 572
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 2 cut(s) 201, 354
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 6 cut(s) 31, 36, 106, 442, 561, 565
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 3 cut(s) 348, 411, 477
MslI CAYNNNNRTG 1 cut(s) 395
Msp20I TGGCCA 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 14, 203, 639
NdeII GATC 5 cut(s) 151, 157, 270, 324, 402
NlaIII CATG 2 cut(s) 296, 543
NlaIV GGNNCC 2 cut(s) 178, 549
NmuCI GTSAC 4 cut(s) 130, 226, 596, 607
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 87, 618
PleI GAGTC 1 cut(s) 614
PpsI GAGTC 1 cut(s) 614
Ppu21I YACGTR 1 cut(s) 529
PshAI GACNNNNGTC 1 cut(s) 421
PsiI TTATAA 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 178, 549
PspPI GGNCC 2 cut(s) 548, 586
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 395
SalI GTCGAC 1 cut(s) 53
SaqAI TTAA 3 cut(s) 348, 411, 477
SatI GCNGC 2 cut(s) 86, 617
Sau3AI GATC 5 cut(s) 151, 157, 270, 324, 402
Sau96I GGNCC 2 cut(s) 548, 586
SchI GAGTC 1 cut(s) 615
ScrFI CCNGG 1 cut(s) 181
SfaNI GCATC 4 cut(s) 133, 294, 399, 491
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 586
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 2 cut(s) 201, 354
SsiI CCGC 2 cut(s) 85, 110
SspMI CTAG 2 cut(s) 209, 590
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 1 cut(s) 531
TaqI TCGA 2 cut(s) 54, 652
TaqII GACCGA 2 cut(s) 79, 232
TasI AATT 2 cut(s) 201, 354
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 3 cut(s) 348, 411, 477
Tru9I TTAA 3 cut(s) 348, 411, 477
TseFI GTSAC 4 cut(s) 130, 226, 596, 607
TseI GCWGC 1 cut(s) 616
Tsp45I GTSAC 4 cut(s) 130, 226, 596, 607
TspGWI ACGGA 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 586
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 209, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.