ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 510 |
| AccI | GTMKAC | 1 cut(s) | 326 |
| AciI | CCGC | 3 cut(s) | 500, 509, 533 |
| AclWI | GGATC | 3 cut(s) | 144, 272, 291 |
| AfaI | GTAC | 3 cut(s) | 39, 478, 543 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 394, 437, 543 |
| AflIII | ACRYGT | 1 cut(s) | 418 |
| AgsI | TTSAA | 3 cut(s) | 34, 451, 603 |
| AjnI | CCWGG | 2 cut(s) | 23, 536 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 227, 259 |
| Alw21I | GWGCWC | 2 cut(s) | 193, 437 |
| AlwI | GGATC | 3 cut(s) | 144, 272, 291 |
| Ama87I | CYCGRG | 1 cut(s) | 436 |
| AoxI | GGCC | 2 cut(s) | 440, 534 |
| ApeKI | GCWGC | 2 cut(s) | 497, 577 |
| AspLEI | GCGC | 1 cut(s) | 172 |
| AspS9I | GGNCC | 1 cut(s) | 440 |
| AsuC2I | CCSGG | 1 cut(s) | 389 |
| AsuHPI | GGTGA | 2 cut(s) | 259, 319 |
| AvaI | CYCGRG | 1 cut(s) | 436 |
| AxyI | CCTNAGG | 1 cut(s) | 590 |
| BanII | GRGCYC | 1 cut(s) | 556 |
| Bbv12I | GWGCWC | 2 cut(s) | 193, 437 |
| BbvI | GCAGC | 2 cut(s) | 509, 564 |
| BccI | CCATC | 1 cut(s) | 209 |
| BceAI | ACGGC | 1 cut(s) | 415 |
| BciT130I | CCWGG | 2 cut(s) | 25, 538 |
| BciVI | GTATCC | 1 cut(s) | 395 |
| BcnI | CCSGG | 1 cut(s) | 389 |
| BfaI | CTAG | 2 cut(s) | 50, 153 |
| BfuAI | ACCTGC | 1 cut(s) | 510 |
| BfuI | GTATCC | 1 cut(s) | 395 |
| BisI | GCNGC | 3 cut(s) | 498, 534, 578 |
| BlsI | GCNGC | 3 cut(s) | 499, 535, 579 |
| Bme1390I | CCNGG | 3 cut(s) | 25, 389, 538 |
| BmeT110I | CYCGRG | 1 cut(s) | 436 |
| BmgT120I | GGNCC | 1 cut(s) | 440 |
| BmiI | GGNNCC | 1 cut(s) | 441 |
| BmrFI | CCNGG | 3 cut(s) | 25, 389, 538 |
| BmrI | ACTGGG | 1 cut(s) | 157 |
| BmsI | GCATC | 2 cut(s) | 457, 564 |
| BmuI | ACTGGG | 1 cut(s) | 157 |
| BpuEI | CTTGAG | 1 cut(s) | 90 |
| BpuMI | CCSGG | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 4 cut(s) | 24, 173, 330, 537 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 102, 132 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 394, 437, 543 |
| Bse118I | RCCGGY | 2 cut(s) | 442, 493 |
| Bse1I | ACTGG | 1 cut(s) | 152 |
| Bse21I | CCTNAGG | 1 cut(s) | 590 |
| BseBI | CCWGG | 2 cut(s) | 25, 538 |
| BseDI | CCNNGG | 4 cut(s) | 24, 173, 330, 537 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 394, 437, 543 |
| BseNI | ACTGG | 1 cut(s) | 152 |
| BseRI | GAGGAG | 1 cut(s) | 5 |
| BseXI | GCAGC | 2 cut(s) | 509, 564 |
| BsgI | GTGCAG | 1 cut(s) | 524 |
| BshFI | GGCC | 2 cut(s) | 442, 536 |
| BsiHKAI | GWGCWC | 2 cut(s) | 193, 437 |
| BsiHKCI | CYCGRG | 1 cut(s) | 436 |
| BsiSI | CCGG | 3 cut(s) | 388, 443, 494 |
| BsiWI | CGTACG | 1 cut(s) | 476 |
| BslFI | GGGAC | 3 cut(s) | 97, 350, 502 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 394, 437, 543 |
| BsmFI | GGGAC | 3 cut(s) | 97, 350, 502 |
| BsnI | GGCC | 2 cut(s) | 442, 536 |
| BsoBI | CYCGRG | 1 cut(s) | 436 |
| Bsp1286I | GDGCHC | 3 cut(s) | 193, 437, 556 |
| Bsp143I | GATC | 3 cut(s) | 136, 264, 296 |
| Bsp19I | CCATGG | 1 cut(s) | 173 |
| BspACI | CCGC | 3 cut(s) | 500, 509, 533 |
| BspANI | GGCC | 2 cut(s) | 442, 536 |
| BspLI | GGNNCC | 1 cut(s) | 441 |
| BspMI | ACCTGC | 1 cut(s) | 510 |
| BspPI | GGATC | 3 cut(s) | 144, 272, 291 |
| BsrFI | RCCGGY | 2 cut(s) | 442, 493 |
| BsrI | ACTGG | 1 cut(s) | 152 |
| BssAI | RCCGGY | 2 cut(s) | 442, 493 |
| BssECI | CCNNGG | 4 cut(s) | 24, 173, 330, 537 |
| BssMI | GATC | 3 cut(s) | 136, 264, 296 |
| BssNAI | GTATAC | 1 cut(s) | 327 |
| BssT1I | CCWWGG | 2 cut(s) | 173, 330 |
| Bst1107I | GTATAC | 1 cut(s) | 327 |
| Bst2UI | CCWGG | 2 cut(s) | 25, 538 |
| Bst4CI | ACNGT | 2 cut(s) | 188, 481 |
| Bst6I | CTCTTC | 1 cut(s) | 93 |
| BstC8I | GCNNGC | 3 cut(s) | 428, 444, 507 |
| BstDEI | CTNAG | 1 cut(s) | 590 |
| BstDSI | CCRYGG | 1 cut(s) | 173 |
| BstHHI | GCGC | 1 cut(s) | 172 |
| BstKTI | GATC | 3 cut(s) | 139, 267, 299 |
| BstMBI | GATC | 3 cut(s) | 136, 264, 296 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 149, 432, 506 |
| BstNI | CCWGG | 2 cut(s) | 25, 538 |
| BstSCI | CCNGG | 3 cut(s) | 23, 387, 536 |
| BstV1I | GCAGC | 2 cut(s) | 509, 564 |
| BstX2I | RGATCY | 2 cut(s) | 136, 296 |
| BstYI | RGATCY | 2 cut(s) | 136, 296 |
| BstZ17I | GTATAC | 1 cut(s) | 327 |
| Bsu36I | CCTNAGG | 1 cut(s) | 590 |
| BsuI | GTATCC | 1 cut(s) | 395 |
| BsuRI | GGCC | 2 cut(s) | 442, 536 |
| BtgI | CCRYGG | 1 cut(s) | 173 |
| BtsI | GCAGTG | 1 cut(s) | 18 |
| BtsIMutI | CAGTG | 1 cut(s) | 18 |
| BveI | ACCTGC | 1 cut(s) | 510 |
| Cac8I | GCNNGC | 3 cut(s) | 428, 444, 507 |
| CfoI | GCGC | 1 cut(s) | 172 |
| Cfr10I | RCCGGY | 2 cut(s) | 442, 493 |
| Cfr13I | GGNCC | 1 cut(s) | 440 |
| Csp6I | GTAC | 3 cut(s) | 38, 477, 542 |
| CviAII | CATG | 4 cut(s) | 69, 174, 516, 571 |
| CviJI | RGCY | 8 cut(s) | 104, 152, 206, 406, 426, 442, 536, 554 |
| CviKI_1 | RGCY | 8 cut(s) | 104, 152, 206, 406, 426, 442, 536, 554 |
| CviQI | GTAC | 3 cut(s) | 38, 477, 542 |
| DdeI | CTNAG | 1 cut(s) | 590 |
| DpnI | GATC | 3 cut(s) | 138, 266, 298 |
| DpnII | GATC | 3 cut(s) | 136, 264, 296 |
| Eam1104I | CTCTTC | 1 cut(s) | 93 |
| EarI | CTCTTC | 1 cut(s) | 93 |
| Eco130I | CCWWGG | 2 cut(s) | 173, 330 |
| Eco24I | GRGCYC | 1 cut(s) | 556 |
| Eco81I | CCTNAGG | 1 cut(s) | 590 |
| Eco88I | CYCGRG | 1 cut(s) | 436 |
| EcoRII | CCWGG | 2 cut(s) | 23, 536 |
| EcoT14I | CCWWGG | 2 cut(s) | 173, 330 |
| EcoT22I | ATGCAT | 1 cut(s) | 70 |
| EcoT38I | GRGCYC | 1 cut(s) | 556 |
| ErhI | CCWWGG | 2 cut(s) | 173, 330 |
| FaeI | CATG | 4 cut(s) | 72, 177, 519, 574 |
| FaiI | YATR | 9 cut(s) | 56, 66, 70, 175, 213, 327, 517, 572, 611 |
| FaqI | GGGAC | 3 cut(s) | 97, 350, 502 |
| FatI | CATG | 4 cut(s) | 68, 173, 515, 570 |
| FblI | GTMKAC | 1 cut(s) | 326 |
| Fnu4HI | GCNGC | 3 cut(s) | 498, 534, 578 |
| FriOI | GRGCYC | 1 cut(s) | 556 |
| Fsp4HI | GCNGC | 3 cut(s) | 498, 534, 578 |
| FspBI | CTAG | 2 cut(s) | 50, 153 |
| GlaI | GCGC | 1 cut(s) | 171 |
| GluI | GCNGC | 3 cut(s) | 498, 534, 578 |
| HaeIII | GGCC | 2 cut(s) | 442, 536 |
| HapII | CCGG | 3 cut(s) | 388, 443, 494 |
| HhaI | GCGC | 1 cut(s) | 172 |
| Hin1II | CATG | 4 cut(s) | 72, 177, 519, 574 |
| Hin6I | GCGC | 1 cut(s) | 170 |
| HinP1I | GCGC | 1 cut(s) | 170 |
| HpaII | CCGG | 3 cut(s) | 388, 443, 494 |
| HphI | GGTGA | 2 cut(s) | 259, 319 |
| Hpy166II | GTNNAC | 1 cut(s) | 327 |
| Hpy188I | TCNGA | 4 cut(s) | 136, 228, 296, 301 |
| Hpy188III | TCNNGA | 1 cut(s) | 344 |
| Hpy8I | GTNNAC | 1 cut(s) | 327 |
| HpyAV | CCTTC | 2 cut(s) | 55, 229 |
| HpyCH4III | ACNGT | 2 cut(s) | 188, 481 |
| HpyCH4IV | ACGT | 3 cut(s) | 86, 269, 420 |
| HpyCH4V | TGCA | 8 cut(s) | 68, 91, 143, 274, 470, 505, 519, 566 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 149, 432, 506 |
| HpyF3I | CTNAG | 1 cut(s) | 590 |
| HpySE526I | ACGT | 3 cut(s) | 86, 269, 420 |
| Hsp92II | CATG | 4 cut(s) | 72, 177, 519, 574 |
| HspAI | GCGC | 1 cut(s) | 170 |
| KroI | GCCGGC | 1 cut(s) | 442 |
| KroNI | GCCGGC | 1 cut(s) | 444 |
| Kzo9I | GATC | 3 cut(s) | 136, 264, 296 |
| LmnI | GCTCC | 2 cut(s) | 47, 196 |
| Lsp1109I | GCAGC | 2 cut(s) | 509, 564 |
| LweI | GCATC | 2 cut(s) | 457, 564 |
| MaeI | CTAG | 2 cut(s) | 50, 153 |
| MaeII | ACGT | 3 cut(s) | 86, 269, 420 |
| MaeIII | GTNAC | 1 cut(s) | 410 |
| MalI | GATC | 3 cut(s) | 138, 266, 298 |
| MboI | GATC | 3 cut(s) | 136, 264, 296 |
| MboII | GAAGA | 2 cut(s) | 110, 470 |
| MflI | RGATCY | 2 cut(s) | 136, 296 |
| MhlI | GDGCHC | 3 cut(s) | 193, 437, 556 |
| MnlI | CCTC | 6 cut(s) | 26, 66, 94, 104, 156, 448 |
| Mph1103I | ATGCAT | 1 cut(s) | 70 |
| MroNI | GCCGGC | 1 cut(s) | 442 |
| MseI | TTAA | 1 cut(s) | 183 |
| MspA1I | CMGCKG | 1 cut(s) | 500 |
| MspI | CCGG | 3 cut(s) | 388, 443, 494 |
| MspR9I | CCNGG | 3 cut(s) | 25, 389, 538 |
| MvaI | CCWGG | 2 cut(s) | 25, 538 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 149, 432, 506 |
| NaeI | GCCGGC | 1 cut(s) | 444 |
| NciI | CCSGG | 1 cut(s) | 389 |
| NcoI | CCATGG | 1 cut(s) | 173 |
| NdeII | GATC | 3 cut(s) | 136, 264, 296 |
| NgoMIV | GCCGGC | 1 cut(s) | 442 |
| NlaIII | CATG | 4 cut(s) | 72, 177, 519, 574 |
| NlaIV | GGNNCC | 1 cut(s) | 441 |
| NmuCI | GTSAC | 1 cut(s) | 410 |
| NsiI | ATGCAT | 1 cut(s) | 70 |
| PdiI | GCCGGC | 1 cut(s) | 444 |
| Pfl23II | CGTACG | 1 cut(s) | 476 |
| PkrI | GCNGC | 3 cut(s) | 499, 535, 579 |
| Psp6I | CCWGG | 2 cut(s) | 23, 536 |
| PspGI | CCWGG | 2 cut(s) | 23, 536 |
| PspLI | CGTACG | 1 cut(s) | 476 |
| PspN4I | GGNNCC | 1 cut(s) | 441 |
| PspPI | GGNCC | 1 cut(s) | 440 |
| PsuI | RGATCY | 2 cut(s) | 136, 296 |
| RsaI | GTAC | 3 cut(s) | 39, 478, 543 |
| RsaNI | GTAC | 3 cut(s) | 38, 477, 542 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| SatI | GCNGC | 3 cut(s) | 498, 534, 578 |
| Sau3AI | GATC | 3 cut(s) | 136, 264, 296 |
| Sau96I | GGNCC | 1 cut(s) | 440 |
| ScrFI | CCNGG | 3 cut(s) | 25, 389, 538 |
| SduI | GDGCHC | 3 cut(s) | 193, 437, 556 |
| SfaNI | GCATC | 2 cut(s) | 457, 564 |
| SmlI | CTYRAG | 1 cut(s) | 105 |
| SmoI | CTYRAG | 1 cut(s) | 105 |
| SsiI | CCGC | 3 cut(s) | 500, 509, 533 |
| SspMI | CTAG | 2 cut(s) | 50, 153 |
| StyD4I | CCNGG | 3 cut(s) | 23, 387, 536 |
| StyI | CCWWGG | 2 cut(s) | 173, 330 |
| TaaI | ACNGT | 2 cut(s) | 188, 481 |
| TaiI | ACGT | 3 cut(s) | 89, 272, 423 |
| TaqI | TCGA | 2 cut(s) | 61, 96 |
| TauI | GCSGC | 1 cut(s) | 536 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TscAI | CASTG | 1 cut(s) | 25 |
| TseFI | GTSAC | 1 cut(s) | 410 |
| TseI | GCWGC | 2 cut(s) | 497, 577 |
| Tsp45I | GTSAC | 1 cut(s) | 410 |
| TspDTI | ATGAA | 1 cut(s) | 587 |
| TspRI | CASTG | 1 cut(s) | 25 |
| XmiI | GTMKAC | 1 cut(s) | 326 |
| XspI | CTAG | 2 cut(s) | 50, 153 |
| Zsp2I | ATGCAT | 1 cut(s) | 70 |