Rroxscaffold_3G00242000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000187
Physical Location & Seq
Forward (+)
34349985 .. 34355432
5448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242000.1

Sequence Viewer

Length: 465 bp
ATGGCCTTGGCGCCGCTCATGGTTGTAGAGTGGGGGAAGCACCGAGCTCGAAGGAGCTCAAAGGTCGAAGAGACGAATGGGATTTTTTTGTGTGAACGAAAAAAGAAAAAGAAGCGATTGAGGATTGGTCACTTCGAGGACCGGCCGACTAGCCGACCTCATCTCGCCGCCTTTGACGAGACGACCGGAGAAGAAAGCAGGGTCGTGGGTGCCCGAAAAGATTTCGGGTGCTTATGGCGGCGGCGTGTGGGTTACCTTCGGGCATACCCCGATGACAGAGAAGCCGCCGGTGGATCGTCGGAGGCCGCCGAGCAGATGGTGGTGGAGGTGATCAACCGGGCTAGGGTTTGTATGGCAAGTAAGGATGTTGTTTTTCATACCGTGGTTCCTAATCAAATGTCGGAAAGTTTGCTTCACAATCCGACAATGCCGCCGAATCGGCCTTGGCGTCGGGTAAATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.67

Weight (kDa)

10.08

Isoelectric Point (pI)

63.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 10, 209
AccBSI CCGCTC 1 cut(s) 16
AciI CCGC 7 cut(s) 14, 168, 238, 241, 285, 306, 431
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 143
AcyI GRCGYC 2 cut(s) 11, 448
AfiI CCNNNNNNNGG 1 cut(s) 343
AluBI AGCT 2 cut(s) 47, 57
AluI AGCT 2 cut(s) 47, 57
Alw21I GWGCWC 2 cut(s) 49, 59
Alw26I GTCTC 2 cut(s) 65, 173
AlwI GGATC 1 cut(s) 301
AoxI GGCC 4 cut(s) 3, 143, 303, 440
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 340
AvaII GGWCC 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 214
BanI GGYRCC 2 cut(s) 10, 209
BanII GRGCYC 2 cut(s) 49, 59
Bbv12I GWGCWC 2 cut(s) 49, 59
BccI CCATC 1 cut(s) 310
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BclI TGATCA 1 cut(s) 330
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 65, 173
BfaI CTAG 3 cut(s) 150, 342, 463
BfoI RGCGCY 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 439
BisI GCNGC 7 cut(s) 14, 168, 239, 242, 285, 306, 431
BlsI GCNGC 7 cut(s) 15, 169, 240, 243, 286, 307, 432
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 3 cut(s) 12, 211, 387
BmrFI CCNGG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 338
BsaHI GRCGYC 2 cut(s) 11, 448
BsaJI CCNNGG 3 cut(s) 6, 381, 443
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 2 cut(s) 141, 287
BseDI CCNNGG 3 cut(s) 6, 381, 443
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 214
BseX3I CGGCCG 1 cut(s) 143
Bsh1285I CGRYCG 2 cut(s) 146, 186
BshFI GGCC 4 cut(s) 5, 145, 305, 442
BshNI GGYRCC 2 cut(s) 10, 209
BsiEI CGRYCG 2 cut(s) 146, 186
BsiHKAI GWGCWC 2 cut(s) 49, 59
BsiSI CCGG 4 cut(s) 142, 186, 288, 337
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 2 cut(s) 65, 173
BsmBI CGTCTC 2 cut(s) 65, 173
BsnI GGCC 4 cut(s) 5, 145, 305, 442
Bsp1286I GDGCHC 3 cut(s) 49, 59, 214
Bsp143I GATC 2 cut(s) 293, 330
BspACI CCGC 7 cut(s) 14, 168, 238, 241, 285, 306, 431
BspANI GGCC 4 cut(s) 5, 145, 305, 442
BspLI GGNNCC 3 cut(s) 12, 211, 387
BspPI GGATC 1 cut(s) 301
BspT107I GGYRCC 2 cut(s) 10, 209
BsrBI CCGCTC 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 141, 287
BssAI RCCGGY 2 cut(s) 141, 287
BssECI CCNNGG 3 cut(s) 6, 381, 443
BssMI GATC 2 cut(s) 293, 330
BssNI GRCGYC 2 cut(s) 11, 448
BssT1I CCWWGG 2 cut(s) 6, 443
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 11, 448
BstDSI CCRYGG 1 cut(s) 381
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 2 cut(s) 296, 333
BstMAI GTCTC 2 cut(s) 65, 173
BstMBI GATC 2 cut(s) 293, 330
BstMCI CGRYCG 2 cut(s) 146, 186
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 143
BsuRI GGCC 4 cut(s) 5, 145, 305, 442
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 370
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 2 cut(s) 141, 287
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 437
CviAII CATG 1 cut(s) 19
CviJI RGCY 9 cut(s) 5, 47, 57, 145, 153, 284, 305, 341, 442
CviKI_1 RGCY 9 cut(s) 5, 47, 57, 145, 153, 284, 305, 341, 442
DinI GGCGCC 1 cut(s) 12
DpnI GATC 2 cut(s) 295, 332
DpnII GATC 2 cut(s) 293, 330
EaeI YGGCCR 1 cut(s) 143
EagI CGGCCG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 2 cut(s) 47, 57
EclXI CGGCCG 1 cut(s) 143
Eco130I CCWWGG 2 cut(s) 6, 443
Eco24I GRGCYC 2 cut(s) 49, 59
Eco47I GGWCC 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 143
Eco53kI GAGCTC 2 cut(s) 47, 57
Eco91I GGTNACC 1 cut(s) 251
EcoICRI GAGCTC 2 cut(s) 47, 57
EcoO65I GGTNACC 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 6, 443
EcoT38I GRGCYC 2 cut(s) 49, 59
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
ErhI CCWWGG 2 cut(s) 6, 443
Esp3I CGTCTC 2 cut(s) 65, 173
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 20, 235, 265, 353, 378
FatI CATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 7 cut(s) 14, 168, 239, 242, 285, 306, 431
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 2 cut(s) 49, 59
Fsp4HI GCNGC 7 cut(s) 14, 168, 239, 242, 285, 306, 431
FspBI CTAG 3 cut(s) 150, 342, 463
GlaI GCGC 1 cut(s) 12
GluI GCNGC 7 cut(s) 14, 168, 239, 242, 285, 306, 431
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 4 cut(s) 5, 145, 305, 442
HapII CCGG 4 cut(s) 142, 186, 288, 337
HgaI GACGC 1 cut(s) 437
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 2 cut(s) 11, 448
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 1 cut(s) 436
HpaII CCGG 4 cut(s) 142, 186, 288, 337
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 301, 403, 423
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 2 cut(s) 301, 453
HpyAV CCTTC 2 cut(s) 45, 266
HpyCH4III ACNGT 1 cut(s) 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
Hsp92I GRCGYC 2 cut(s) 11, 448
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 11
KasI GGCGCC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 2 cut(s) 293, 330
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 155, 184, 199, 301, 350
MaeI CTAG 3 cut(s) 150, 342, 463
MaeIII GTNAC 2 cut(s) 128, 251
MalI GATC 2 cut(s) 295, 332
MbiI CCGCTC 1 cut(s) 16
MboI GATC 2 cut(s) 293, 330
MboII GAAGA 2 cut(s) 80, 203
MhlI GDGCHC 3 cut(s) 49, 59, 214
Mly113I GGCGCC 1 cut(s) 11
MmeI TCCRAC 3 cut(s) 279, 381, 446
MnlI CCTC 5 cut(s) 114, 130, 168, 295, 319
MspI CCGG 4 cut(s) 142, 186, 288, 337
MspR9I CCNGG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 439
NarI GGCGCC 1 cut(s) 11
NciI CCSGG 1 cut(s) 338
NdeII GATC 2 cut(s) 293, 330
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 3 cut(s) 12, 211, 387
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 445
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 7 cut(s) 15, 169, 240, 243, 286, 307, 432
PluTI GGCGCC 1 cut(s) 14
Psp124BI GAGCTC 2 cut(s) 49, 59
PspEI GGTNACC 1 cut(s) 251
PspN4I GGNNCC 3 cut(s) 12, 211, 387
PspPI GGNCC 1 cut(s) 139
SacI GAGCTC 2 cut(s) 49, 59
SatI GCNGC 7 cut(s) 14, 168, 239, 242, 285, 306, 431
Sau3AI GATC 2 cut(s) 293, 330
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 3 cut(s) 49, 59, 214
SetI ASST 6 cut(s) 49, 59, 66, 160, 258, 330
SfoI GGCGCC 1 cut(s) 12
SgrAI CRCCGGYG 1 cut(s) 287
SinI GGWCC 1 cut(s) 139
SsiI CCGC 7 cut(s) 14, 168, 238, 241, 285, 306, 431
SspDI GGCGCC 1 cut(s) 10
SspMI CTAG 3 cut(s) 150, 342, 463
SstI GAGCTC 2 cut(s) 49, 59
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 6, 443
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 3 cut(s) 49, 66, 135
TauI GCSGC 7 cut(s) 16, 170, 241, 244, 287, 308, 433
TfiI GAWTC 1 cut(s) 436
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 139
XspI CTAG 3 cut(s) 150, 342, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.