Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 905 |
| Acc36I | ACCTGC | 3 cut(s) | 803, 817, 905 |
| Acc65I | GGTACC | 1 cut(s) | 751 |
| AccB1I | GGYRCC | 1 cut(s) | 751 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 470 |
| AccBSI | CCGCTC | 1 cut(s) | 23 |
| AccII | CGCG | 1 cut(s) | 93 |
| AccIII | TCCGGA | 1 cut(s) | 60 |
| AciI | CCGC | 2 cut(s) | 21, 921 |
| AclWI | GGATC | 2 cut(s) | 164, 272 |
| AcuI | CTGAAG | 1 cut(s) | 767 |
| AfaI | GTAC | 5 cut(s) | 32, 260, 520, 625, 753 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 261, 470 |
| AgeI | ACCGGT | 1 cut(s) | 754 |
| AgsI | TTSAA | 4 cut(s) | 233, 343, 353, 724 |
| AhlI | ACTAGT | 1 cut(s) | 626 |
| AjnI | CCWGG | 3 cut(s) | 48, 330, 441 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 710, 742 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 559, 591 |
| AluBI | AGCT | 9 cut(s) | 13, 170, 559, 688, 704, 742, 892, 904, 956 |
| AluI | AGCT | 9 cut(s) | 13, 170, 559, 688, 704, 742, 892, 904, 956 |
| Alw21I | GWGCWC | 1 cut(s) | 172 |
| Alw26I | GTCTC | 2 cut(s) | 799, 858 |
| AlwI | GGATC | 2 cut(s) | 164, 272 |
| Ama87I | CYCGRG | 2 cut(s) | 24, 583 |
| Aor13HI | TCCGGA | 1 cut(s) | 60 |
| AoxI | GGCC | 3 cut(s) | 360, 439, 457 |
| ApeKI | GCWGC | 2 cut(s) | 556, 760 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 401, 433 |
| AsiGI | ACCGGT | 1 cut(s) | 754 |
| Asp718I | GGTACC | 1 cut(s) | 751 |
| AspLEI | GCGC | 1 cut(s) | 93 |
| AspS9I | GGNCC | 1 cut(s) | 473 |
| AsuHPI | GGTGA | 5 cut(s) | 10, 88, 238, 319, 799 |
| AvaI | CYCGRG | 2 cut(s) | 24, 583 |
| AvaII | GGWCC | 1 cut(s) | 473 |
| BanI | GGYRCC | 1 cut(s) | 751 |
| BanII | GRGCYC | 1 cut(s) | 172 |
| BbsI | GAAGAC | 1 cut(s) | 652 |
| Bbv12I | GWGCWC | 1 cut(s) | 172 |
| BbvCI | CCTCAGC | 1 cut(s) | 250 |
| BbvI | GCAGC | 2 cut(s) | 568, 772 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 3 cut(s) | 50, 332, 443 |
| BcoDI | GTCTC | 2 cut(s) | 799, 858 |
| BcuI | ACTAGT | 1 cut(s) | 626 |
| BfaI | CTAG | 4 cut(s) | 203, 627, 701, 743 |
| BfmI | CTRYAG | 1 cut(s) | 810 |
| BfuAI | ACCTGC | 3 cut(s) | 803, 817, 905 |
| BisI | GCNGC | 2 cut(s) | 557, 761 |
| BlsI | GCNGC | 2 cut(s) | 558, 762 |
| Bme1390I | CCNGG | 3 cut(s) | 50, 332, 443 |
| Bme18I | GGWCC | 1 cut(s) | 473 |
| BmeT110I | CYCGRG | 2 cut(s) | 24, 583 |
| BmgT120I | GGNCC | 1 cut(s) | 473 |
| BmiI | GGNNCC | 2 cut(s) | 732, 753 |
| BmrFI | CCNGG | 3 cut(s) | 50, 332, 443 |
| BmsI | GCATC | 3 cut(s) | 288, 416, 543 |
| BpiI | GAAGAC | 1 cut(s) | 652 |
| Bpu10I | CCTNAGC | 1 cut(s) | 250 |
| BpuEI | CTTGAG | 1 cut(s) | 674 |
| Bsa29I | ATCGAT | 1 cut(s) | 40 |
| BsaI | GGTCTC | 1 cut(s) | 799 |
| BsaJI | CCNNGG | 4 cut(s) | 49, 173, 330, 331 |
| BsaWI | WCCGGW | 3 cut(s) | 60, 733, 754 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 261, 470 |
| Bse118I | RCCGGY | 1 cut(s) | 754 |
| Bse1I | ACTGG | 1 cut(s) | 266 |
| BseAI | TCCGGA | 1 cut(s) | 60 |
| BseBI | CCWGG | 3 cut(s) | 50, 332, 443 |
| BseCI | ATCGAT | 1 cut(s) | 40 |
| BseDI | CCNNGG | 4 cut(s) | 49, 173, 330, 331 |
| BseGI | GGATG | 4 cut(s) | 60, 279, 382, 664 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 261, 470 |
| BseMII | CTCAG | 3 cut(s) | 264, 291, 759 |
| BseNI | ACTGG | 1 cut(s) | 266 |
| BseRI | GAGGAG | 1 cut(s) | 500 |
| BseXI | GCAGC | 2 cut(s) | 568, 772 |
| BsgI | GTGCAG | 1 cut(s) | 779 |
| Bsh1236I | CGCG | 1 cut(s) | 93 |
| Bsh1285I | CGRYCG | 1 cut(s) | 148 |
| BshFI | GGCC | 3 cut(s) | 362, 441, 459 |
| BshNI | GGYRCC | 1 cut(s) | 751 |
| BshTI | ACCGGT | 1 cut(s) | 754 |
| BshVI | ATCGAT | 1 cut(s) | 40 |
| BsiEI | CGRYCG | 1 cut(s) | 148 |
| BsiHKAI | GWGCWC | 1 cut(s) | 172 |
| BsiHKCI | CYCGRG | 2 cut(s) | 24, 583 |
| BsiSI | CCGG | 3 cut(s) | 61, 734, 755 |
| BslFI | GGGAC | 1 cut(s) | 544 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 261, 470 |
| BsmAI | GTCTC | 2 cut(s) | 799, 858 |
| BsmBI | CGTCTC | 1 cut(s) | 858 |
| BsmFI | GGGAC | 1 cut(s) | 544 |
| BsmI | GAATGC | 2 cut(s) | 70, 616 |
| BsnI | GGCC | 3 cut(s) | 362, 441, 459 |
| Bso31I | GGTCTC | 1 cut(s) | 799 |
| BsoBI | CYCGRG | 2 cut(s) | 24, 583 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp13I | TCCGGA | 1 cut(s) | 60 |
| Bsp143I | GATC | 5 cut(s) | 41, 145, 156, 264, 318 |
| Bsp19I | CCATGG | 1 cut(s) | 173 |
| BspACI | CCGC | 2 cut(s) | 21, 921 |
| BspANI | GGCC | 3 cut(s) | 362, 441, 459 |
| BspCNI | CTCAG | 3 cut(s) | 263, 292, 760 |
| BspDI | ATCGAT | 1 cut(s) | 40 |
| BspEI | TCCGGA | 1 cut(s) | 60 |
| BspFNI | CGCG | 1 cut(s) | 93 |
| BspLI | GGNNCC | 2 cut(s) | 732, 753 |
| BspMAI | CTGCAG | 1 cut(s) | 814 |
| BspMI | ACCTGC | 3 cut(s) | 803, 817, 905 |
| BspPI | GGATC | 2 cut(s) | 164, 272 |
| BspT107I | GGYRCC | 1 cut(s) | 751 |
| BspTNI | GGTCTC | 1 cut(s) | 799 |
| BsrBI | CCGCTC | 1 cut(s) | 23 |
| BsrFI | RCCGGY | 1 cut(s) | 754 |
| BsrI | ACTGG | 1 cut(s) | 266 |
| BssAI | RCCGGY | 1 cut(s) | 754 |
| BssECI | CCNNGG | 4 cut(s) | 49, 173, 330, 331 |
| BssMI | GATC | 5 cut(s) | 41, 145, 156, 264, 318 |
| BssT1I | CCWWGG | 1 cut(s) | 173 |
| Bst2UI | CCWGG | 3 cut(s) | 50, 332, 443 |
| Bst4CI | ACNGT | 1 cut(s) | 511 |
| Bst6I | CTCTTC | 2 cut(s) | 635, 791 |
| BstDEI | CTNAG | 4 cut(s) | 250, 300, 514, 768 |
| BstDSI | CCRYGG | 1 cut(s) | 173 |
| BstF5I | GGATG | 4 cut(s) | 60, 279, 382, 664 |
| BstFNI | CGCG | 1 cut(s) | 93 |
| BstHHI | GCGC | 1 cut(s) | 93 |
| BstKTI | GATC | 5 cut(s) | 44, 148, 159, 267, 321 |
| BstMAI | GTCTC | 2 cut(s) | 799, 858 |
| BstMBI | GATC | 5 cut(s) | 41, 145, 156, 264, 318 |
| BstMCI | CGRYCG | 1 cut(s) | 148 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 465, 553 |
| BstNI | CCWGG | 3 cut(s) | 50, 332, 443 |
| BstSCI | CCNGG | 3 cut(s) | 48, 330, 441 |
| BstSFI | CTRYAG | 1 cut(s) | 810 |
| BstUI | CGCG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 2 cut(s) | 568, 772 |
| BstV2I | GAAGAC | 1 cut(s) | 652 |
| BstX2I | RGATCY | 1 cut(s) | 156 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 370 |
| BstYI | RGATCY | 1 cut(s) | 156 |
| Bsu15I | ATCGAT | 1 cut(s) | 40 |
| BsuRI | GGCC | 3 cut(s) | 362, 441, 459 |
| BsuTUI | ATCGAT | 1 cut(s) | 40 |
| BtgI | CCRYGG | 1 cut(s) | 173 |
| BtsCI | GGATG | 4 cut(s) | 60, 279, 382, 664 |
| BtsI | GCAGTG | 1 cut(s) | 86 |
| BtsIMutI | CAGTG | 1 cut(s) | 86 |
| BveI | ACCTGC | 3 cut(s) | 803, 817, 905 |
| CfoI | GCGC | 1 cut(s) | 93 |
| Cfr10I | RCCGGY | 1 cut(s) | 754 |
| Cfr13I | GGNCC | 1 cut(s) | 473 |
| ClaI | ATCGAT | 1 cut(s) | 40 |
| CseI | GACGC | 3 cut(s) | 82, 146, 582 |
| Csp6I | GTAC | 5 cut(s) | 31, 259, 519, 624, 752 |
| CspAI | ACCGGT | 1 cut(s) | 754 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 898, 933 |
| CviAII | CATG | 5 cut(s) | 69, 174, 188, 452, 465 |
| CviQI | GTAC | 5 cut(s) | 31, 259, 519, 624, 752 |
| DdeI | CTNAG | 4 cut(s) | 250, 300, 514, 768 |
| DpnI | GATC | 5 cut(s) | 43, 147, 158, 266, 320 |
| DpnII | GATC | 5 cut(s) | 41, 145, 156, 264, 318 |
| Eam1104I | CTCTTC | 2 cut(s) | 635, 791 |
| EarI | CTCTTC | 2 cut(s) | 635, 791 |
| EciI | GGCGGA | 1 cut(s) | 936 |
| Ecl136II | GAGCTC | 1 cut(s) | 170 |
| Eco130I | CCWWGG | 1 cut(s) | 173 |
| Eco147I | AGGCCT | 1 cut(s) | 459 |
| Eco24I | GRGCYC | 1 cut(s) | 172 |
| Eco31I | GGTCTC | 1 cut(s) | 799 |
| Eco47I | GGWCC | 1 cut(s) | 473 |
| Eco53kI | GAGCTC | 1 cut(s) | 170 |
| Eco57I | CTGAAG | 1 cut(s) | 767 |
| Eco88I | CYCGRG | 2 cut(s) | 24, 583 |
| EcoICRI | GAGCTC | 1 cut(s) | 170 |
| EcoRII | CCWGG | 3 cut(s) | 48, 330, 441 |
| EcoT14I | CCWWGG | 1 cut(s) | 173 |
| EcoT22I | ATGCAT | 1 cut(s) | 70 |
| EcoT38I | GRGCYC | 1 cut(s) | 172 |
| ErhI | CCWWGG | 1 cut(s) | 173 |
| Esp3I | CGTCTC | 1 cut(s) | 858 |
| FaeI | CATG | 5 cut(s) | 72, 177, 191, 455, 468 |
| FaqI | GGGAC | 1 cut(s) | 544 |
| FatI | CATG | 5 cut(s) | 68, 173, 187, 451, 464 |
| Fnu4HI | GCNGC | 2 cut(s) | 557, 761 |
| FokI | GGATG | 4 cut(s) | 67, 266, 389, 671 |
| FriOI | GRGCYC | 1 cut(s) | 172 |
| Fsp4HI | GCNGC | 2 cut(s) | 557, 761 |
| FspBI | CTAG | 4 cut(s) | 203, 627, 701, 743 |
| GlaI | GCGC | 1 cut(s) | 92 |
| GluI | GCNGC | 2 cut(s) | 557, 761 |
| HaeIII | GGCC | 3 cut(s) | 362, 441, 459 |
| HapII | CCGG | 3 cut(s) | 61, 734, 755 |
| HgaI | GACGC | 3 cut(s) | 82, 146, 582 |
| HhaI | GCGC | 1 cut(s) | 93 |
| Hin1II | CATG | 5 cut(s) | 72, 177, 191, 455, 468 |
| Hin6I | GCGC | 1 cut(s) | 91 |
| HinP1I | GCGC | 1 cut(s) | 91 |
| HindIII | AAGCTT | 3 cut(s) | 11, 890, 902 |
| HinfI | GANTC | 6 cut(s) | 37, 233, 497, 618, 697, 929 |
| HpaII | CCGG | 3 cut(s) | 61, 734, 755 |
| HphI | GGTGA | 5 cut(s) | 10, 88, 238, 319, 799 |
| Hpy166II | GTNNAC | 1 cut(s) | 86 |
| Hpy188I | TCNGA | 4 cut(s) | 136, 301, 323, 681 |
| Hpy188III | TCNNGA | 5 cut(s) | 26, 61, 149, 160, 471 |
| Hpy8I | GTNNAC | 1 cut(s) | 86 |
| Hpy99I | CGWCG | 1 cut(s) | 598 |
| HpyAV | CCTTC | 3 cut(s) | 157, 470, 940 |
| HpyCH4III | ACNGT | 1 cut(s) | 511 |
| HpyCH4IV | ACGT | 1 cut(s) | 666 |
| HpyCH4V | TGCA | 8 cut(s) | 68, 274, 396, 556, 614, 760, 812, 914 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 465, 553 |
| HpyF3I | CTNAG | 4 cut(s) | 250, 300, 514, 768 |
| HpySE526I | ACGT | 1 cut(s) | 666 |
| Hsp92II | CATG | 5 cut(s) | 72, 177, 191, 455, 468 |
| HspAI | GCGC | 1 cut(s) | 91 |
| Kpn2I | TCCGGA | 1 cut(s) | 60 |
| KpnI | GGTACC | 1 cut(s) | 755 |
| Kzo9I | GATC | 5 cut(s) | 41, 145, 156, 264, 318 |
| LmnI | GCTCC | 3 cut(s) | 167, 175, 923 |
| Lsp1109I | GCAGC | 2 cut(s) | 568, 772 |
| LweI | GCATC | 3 cut(s) | 288, 416, 543 |
| MaeI | CTAG | 4 cut(s) | 203, 627, 701, 743 |
| MaeII | ACGT | 1 cut(s) | 666 |
| MaeIII | GTNAC | 4 cut(s) | 179, 445, 667, 787 |
| MalI | GATC | 5 cut(s) | 43, 147, 158, 266, 320 |
| MbiI | CCGCTC | 1 cut(s) | 23 |
| MboI | GATC | 5 cut(s) | 41, 145, 156, 264, 318 |
| MboII | GAAGA | 6 cut(s) | 562, 652, 657, 773, 808, 859 |
| MflI | RGATCY | 1 cut(s) | 156 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MlyI | GAGTC | 3 cut(s) | 627, 706, 923 |
| MmeI | TCCRAC | 1 cut(s) | 688 |
| Mph1103I | ATGCAT | 1 cut(s) | 70 |
| MroI | TCCGGA | 1 cut(s) | 60 |
| MspI | CCGG | 3 cut(s) | 61, 734, 755 |
| MspR9I | CCNGG | 3 cut(s) | 50, 332, 443 |
| Mva1269I | GAATGC | 2 cut(s) | 70, 616 |
| MvaI | CCWGG | 3 cut(s) | 50, 332, 443 |
| MvnI | CGCG | 1 cut(s) | 93 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 465, 553 |
| NcoI | CCATGG | 1 cut(s) | 173 |
| NdeII | GATC | 5 cut(s) | 41, 145, 156, 264, 318 |
| NlaIII | CATG | 5 cut(s) | 72, 177, 191, 455, 468 |
| NlaIV | GGNNCC | 2 cut(s) | 732, 753 |
| NmuCI | GTSAC | 2 cut(s) | 667, 787 |
| NsiI | ATGCAT | 1 cut(s) | 70 |
| PaeR7I | CTCGAG | 1 cut(s) | 583 |
| PaqCI | CACCTGC | 1 cut(s) | 905 |
| PasI | CCCWGGG | 1 cut(s) | 331 |
| PceI | AGGCCT | 1 cut(s) | 459 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 590 |
| PctI | GAATGC | 2 cut(s) | 70, 616 |
| PfeI | GAWTC | 3 cut(s) | 37, 233, 497 |
| PflFI | GACNNNGTC | 1 cut(s) | 665 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 470 |
| PinAI | ACCGGT | 1 cut(s) | 754 |
| PkrI | GCNGC | 2 cut(s) | 558, 762 |
| Ple19I | CGATCG | 1 cut(s) | 148 |
| PleI | GAGTC | 3 cut(s) | 626, 705, 923 |
| PpsI | GAGTC | 3 cut(s) | 626, 705, 923 |
| Psp124BI | GAGCTC | 1 cut(s) | 172 |
| Psp6I | CCWGG | 3 cut(s) | 48, 330, 441 |
| PspGI | CCWGG | 3 cut(s) | 48, 330, 441 |
| PspN4I | GGNNCC | 2 cut(s) | 732, 753 |
| PspPI | GGNCC | 1 cut(s) | 473 |
| PspXI | VCTCGAGB | 1 cut(s) | 583 |
| PstI | CTGCAG | 1 cut(s) | 814 |
| PsuI | RGATCY | 1 cut(s) | 156 |
| PsyI | GACNNNGTC | 1 cut(s) | 665 |
| PvuI | CGATCG | 1 cut(s) | 148 |
| RsaI | GTAC | 5 cut(s) | 32, 260, 520, 625, 753 |
| RsaNI | GTAC | 5 cut(s) | 31, 259, 519, 624, 752 |
| SacI | GAGCTC | 1 cut(s) | 172 |
| SatI | GCNGC | 2 cut(s) | 557, 761 |
| Sau3AI | GATC | 5 cut(s) | 41, 145, 156, 264, 318 |
| Sau96I | GGNCC | 1 cut(s) | 473 |
| SbfI | CCTGCAGG | 1 cut(s) | 814 |
| SchI | GAGTC | 3 cut(s) | 627, 706, 923 |
| ScrFI | CCNGG | 3 cut(s) | 50, 332, 443 |
| SdaI | CCTGCAGG | 1 cut(s) | 814 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SfaNI | GCATC | 3 cut(s) | 288, 416, 543 |
| SfcI | CTRYAG | 1 cut(s) | 810 |
| Sfr274I | CTCGAG | 1 cut(s) | 583 |
| SinI | GGWCC | 1 cut(s) | 473 |
| SlaI | CTCGAG | 1 cut(s) | 583 |
| SmlI | CTYRAG | 2 cut(s) | 583, 689 |
| SmoI | CTYRAG | 2 cut(s) | 583, 689 |
| SpeI | ACTAGT | 1 cut(s) | 626 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 814 |
| SseBI | AGGCCT | 1 cut(s) | 459 |
| SsiI | CCGC | 2 cut(s) | 21, 921 |
| SspMI | CTAG | 4 cut(s) | 203, 627, 701, 743 |
| SstI | GAGCTC | 1 cut(s) | 172 |
| StuI | AGGCCT | 1 cut(s) | 459 |
| StyD4I | CCNGG | 3 cut(s) | 48, 330, 441 |
| StyI | CCWWGG | 1 cut(s) | 173 |
| TaaI | ACNGT | 1 cut(s) | 511 |
| TaiI | ACGT | 1 cut(s) | 669 |
| TaqI | TCGA | 8 cut(s) | 40, 148, 384, 424, 431, 578, 584, 596 |
| TatI | WGTACW | 1 cut(s) | 30 |
| TfiI | GAWTC | 3 cut(s) | 37, 233, 497 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TseFI | GTSAC | 2 cut(s) | 667, 787 |
| TseI | GCWGC | 2 cut(s) | 556, 760 |
| Tsp45I | GTSAC | 2 cut(s) | 667, 787 |
| TspDTI | ATGAA | 3 cut(s) | 393, 510, 623 |
| TspGWI | ACGGA | 2 cut(s) | 611, 730 |
| TspRI | CASTG | 1 cut(s) | 93 |
| Tth111I | GACNNNGTC | 1 cut(s) | 665 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 470 |
| VpaK11BI | GGWCC | 1 cut(s) | 473 |
| XhoI | CTCGAG | 1 cut(s) | 583 |
| XspI | CTAG | 4 cut(s) | 203, 627, 701, 743 |
| Zsp2I | ATGCAT | 1 cut(s) | 70 |