Rmu_sc0009891.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009891.1
OG0000187
Physical Location & Seq
Forward (+)
8092 .. 8852
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009891.1_g000003.1.cds

Sequence Viewer

Length: 522 bp
atggttgctcggctggcttcttctctggccgttgctgaggggaggaagcaggtcgacctgcgatcgacacaggggaaggcggaggggaaaagggttcttgtcactctgtctgatgctacagatcaagatcgggtctggaaggcaggttcatggggttataatcatgctccaattgccctagcttactacgatggcttgactgccattgaatcggaaattgacaaacaggccaagaaggttggaaagcttagcatcagggtggagatcccttttaaccgaccattgtccttcgaacgatggtattgggtggaggataaagtcgagtttctctacaagtttaagtttgacaaactctttagtagatgctcagtttgtggtttggttactcacgtaggtctcccatgctcggggcctcctttggaagagaatgatgaggcagaatgcacggtcctagtgagtcacaggcgagtcaccttgctgcaccggagccgcagcctgctgggcaacttatctcgaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.49

Weight (kDa)

9.08

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
Acc36I ACCTGC 3 cut(s) 40, 66, 134
AccI GTMKAC 1 cut(s) 54
AciI CCGC 2 cut(s) 80, 490
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 406, 407
AgsI TTSAA 1 cut(s) 209
AloI GAACNNNNNNTCC 2 cut(s) 130, 162
AluBI AGCT 2 cut(s) 182, 247
AluI AGCT 2 cut(s) 182, 247
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 3 cut(s) 27, 228, 410
ApeKI GCWGC 2 cut(s) 478, 492
AspS9I GGNCC 2 cut(s) 410, 448
AsuHPI GGTGA 1 cut(s) 463
AsuII TTCGAA 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 406
AvaII GGWCC 1 cut(s) 448
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 465, 504
BccI CCATC 2 cut(s) 185, 291
BceAI ACGGC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 2 cut(s) 179, 452
BfmI CTRYAG 1 cut(s) 117
BfuAI ACCTGC 3 cut(s) 40, 66, 134
BglI GCCNNNNNGGC 1 cut(s) 501
BisI GCNGC 3 cut(s) 479, 490, 493
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 3 cut(s) 480, 491, 494
Bme18I GGWCC 1 cut(s) 448
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 410, 448
BmiI GGNNCC 2 cut(s) 411, 488
BmsI GCATC 3 cut(s) 103, 261, 353
BoxI GACNNNNGTC 1 cut(s) 283
Bpu10I CCTNAGC 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 483
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 407
Bse8I GATNNNNATC 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 406, 407
BseMII CTCAG 2 cut(s) 27, 381
BseXI GCAGC 2 cut(s) 465, 504
BseYI CCCAGC 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 464
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 3 cut(s) 29, 230, 412
BsiEI CGRYCG 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 2 cut(s) 406, 407
BsmAI GTCTC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 3 cut(s) 29, 230, 412
Bso31I GGTCTC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 406
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 4 cut(s) 62, 121, 127, 264
Bsp1720I GCTNAGC 1 cut(s) 248
BspACI CCGC 2 cut(s) 80, 490
BspANI GGCC 3 cut(s) 29, 230, 412
BspCNI CTCAG 2 cut(s) 28, 380
BspLI GGNNCC 2 cut(s) 411, 488
BspMI ACCTGC 3 cut(s) 40, 66, 134
BspPI GGATC 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 401
BssMI GATC 4 cut(s) 62, 121, 127, 264
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 417
BstBAI YACGTR 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 15, 497
BstDEI CTNAG 4 cut(s) 36, 248, 367, 519
BstKTI GATC 4 cut(s) 65, 124, 130, 267
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 4 cut(s) 62, 121, 127, 264
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 14, 173, 501
BstPAI GACNNNNGTC 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 465, 504
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 3 cut(s) 29, 230, 412
BveI ACCTGC 3 cut(s) 40, 66, 134
Cac8I GCNNGC 2 cut(s) 15, 497
Cfr13I GGNCC 2 cut(s) 410, 448
CviAII CATG 3 cut(s) 150, 164, 402
DdeI CTNAG 4 cut(s) 36, 248, 367, 519
DpnI GATC 4 cut(s) 64, 123, 129, 266
DpnII GATC 4 cut(s) 62, 121, 127, 264
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 410
FaeI CATG 3 cut(s) 153, 167, 405
FaiI YATR 4 cut(s) 151, 159, 165, 403
FatI CATG 3 cut(s) 149, 163, 401
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 479, 490, 493
Fsp4HI GCNGC 3 cut(s) 479, 490, 493
FspBI CTAG 2 cut(s) 179, 452
GluI GCNGC 3 cut(s) 479, 490, 493
GsaI CCCAGC 1 cut(s) 503
HaeIII GGCC 3 cut(s) 29, 230, 412
HapII CCGG 1 cut(s) 484
Hin1II CATG 3 cut(s) 153, 167, 405
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 209, 457, 468
HpaII CCGG 1 cut(s) 484
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 112, 214
Hpy188III TCNNGA 3 cut(s) 125, 136, 513
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 70, 133, 229, 298
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 444, 481
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 173, 501
HpyF3I CTNAG 4 cut(s) 36, 248, 367, 519
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 3 cut(s) 153, 167, 405
Kzo9I GATC 4 cut(s) 62, 121, 127, 264
LmnI GCTCC 2 cut(s) 172, 486
Lsp1109I GCAGC 2 cut(s) 465, 504
LweI GCATC 3 cut(s) 103, 261, 353
MaeI CTAG 2 cut(s) 179, 452
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 4 cut(s) 100, 382, 458, 469
MalI GATC 4 cut(s) 64, 123, 129, 266
MboI GATC 4 cut(s) 62, 121, 127, 264
MboII GAAGA 2 cut(s) 12, 434
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 1 cut(s) 264
MluCI AATT 2 cut(s) 171, 216
MlyI GAGTC 2 cut(s) 466, 477
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 6 cut(s) 31, 36, 76, 304, 423, 427
MseI TTAA 2 cut(s) 273, 339
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 1 cut(s) 484
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 14, 173, 501
NdeII GATC 4 cut(s) 62, 121, 127, 264
NlaIII CATG 3 cut(s) 153, 167, 405
NlaIV GGNNCC 2 cut(s) 411, 488
NmuCI GTSAC 3 cut(s) 100, 458, 469
NspV TTCGAA 1 cut(s) 291
PctI GAATGC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 3 cut(s) 480, 491, 494
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 2 cut(s) 465, 476
PpsI GAGTC 2 cut(s) 465, 476
Ppu21I YACGTR 1 cut(s) 391
PshAI GACNNNNGTC 1 cut(s) 283
PsiI TTATAA 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 411, 488
PspPI GGNCC 2 cut(s) 410, 448
PsuI RGATCY 1 cut(s) 264
PvuI CGATCG 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 257
SalI GTCGAC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 273, 339
SatI GCNGC 3 cut(s) 479, 490, 493
Sau3AI GATC 4 cut(s) 62, 121, 127, 264
Sau96I GGNCC 2 cut(s) 410, 448
SchI GAGTC 2 cut(s) 466, 477
SfaNI GCATC 3 cut(s) 103, 261, 353
SfcI CTRYAG 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 2 cut(s) 171, 216
SsiI CCGC 2 cut(s) 80, 490
SspMI CTAG 2 cut(s) 179, 452
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 393
TaqI TCGA 5 cut(s) 54, 65, 291, 321, 514
TasI AATT 2 cut(s) 171, 216
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 273, 339
Tru9I TTAA 2 cut(s) 273, 339
TseFI GTSAC 3 cut(s) 100, 458, 469
TseI GCWGC 2 cut(s) 478, 492
Tsp45I GTSAC 3 cut(s) 100, 458, 469
TspDTI ATGAA 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 179, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.