Rorug02G0224000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000187
Physical Location & Seq
Forward (+)
21700676 .. 21703516
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0224000.1

Sequence Viewer

Length: 1998 bp
ATGGCGCCTTGTATCATGAAACTACCATATCTACCAATCCATATCCTCTTTTTCCTTTTGTTTCTTCCCTATGCTTGCTCAATTTCTTTCCAAATACCCCGATTTGATGCGAGTGCAACCAACATTGTGTATGAGGGAGATGCACTGCCTGCTGTAGGAGTTATCGAACTCATCAACAAATATAGGTATATATGCCGTGTCGGCAGGGCCACCTACGCTGAGAGAATCCCAATCTGGAACTCTCGTACGGGGAAGGTCACTGACTTCACAACCCATTTCTCATTTGTCATCCAAAGACAAGAAACCACTTCTTATGGCAGCGGAATTGCATTCTTTCTTGCTCCTTTTGGATATCAAATCCCCCCAAATTCAGCTGGTGGATTTCTAGGCCTACTCAACACCACAAACAGTGACTACGCCGGAAGCCAGATTGTTGTAGTTGAGTTTGACCCCTTCGTGAACCCAGAATGGGACCCTCCATATCAGCATGTGGGGATCAACAGAAACTCAATTTCTTCTGTTGCGAGCACCCCTTGGAATATTAGCTTACACGATGGAGACACTACTGATGTATGGATCACCTACAGTGCTACAACAACCACACTCAGTGTCAATTGGAGCTACCGAACTACCCCTGCTTCTGCAGAGGAGACAACTAGTCTTTCATACCAAATTGATCTGGCAAAAGTCCTGCCTGAGTGGGTCACAGTAGGATTTTCAGCTGGTACTGGTGGAGACGCTGGGACACGAAATCAGATTGTATCGTGGGAATTCAATTCGACTTTGGATAGGAAGTATCCCGGTCCAGGTCTCCGAAAGGGTGCAAAGAAGATCTTAATGAAAATAGCAGTACCAGTGGCAGTTTCATTGGTTTCTCTGATTGCTGGGATGGTTATTGCAGTAAACATTCCGAGGTTGTATAGGTGGAGATACAAAAAAGGAATCGTGACAGAACCAGGAGCAGAGGAAGAAAGATTGACTTCAATCAATCAAGACAGTAGTGACAGAGGAGCCGGAATGAGAAGGTTCCCTTATTCAGAAATTGAAAGTGCTACCAACAACTTCTCTGAGCAGGTGGGCGAAGGAGGGTCTAGTACGGTTTACAGGGGTAACCTTCCTACTGATGATACCGCTGTCGCTGTGAAGAAAATTTCAAGCAGGTCAGGGCAGGGAAGAAAGGAGTGTATGACGGAAGTGAAGCTCATTAGTAGCTTGAGACACCCAAATCTTGTGCAACTGAAAGGATGGGGGCAAGACAAAGAGGAGAAGACGTTCCTACTTGTTTACGAGTTCATGCCAAATGGAAGCCTTGATGCTCACCTCTTTGGGAAGGGGTGTGCTTTAACCTGGGATGATAGATACAAGATATGCGGGGGGTTGGCCACTGCATTGCTCTATCTTCATGATCCATATCTTCATCAAGGGTGGAAGCAATGCGTGGTGCACCGAGACATTAAATCAAGCAACATCCTATTAGACTCTAGCTTTAATGTCAAGCTAGGCGACTTTGGGTTAGCTCGGCTTATGGATTTTGAGCTAGATCCAGAGACAACTGGGTGGGCTGGAACACCAGGTTATGTGGATCCAGAATATGTACTCAGCAGAAAGGCTAGTAAAGAGTCGGATGTTTATAGCTTTGGGGTCGTTATCTTGGAAATTGCTACTGGAGAAAGGTCGGTGGACTCTATGGGACTGGTAGAGAGGGTTTGGGACCTTTACGAACAAGGTAAGCTTCTTTCAGCTGTGGATAAGAGTTTGCAGGAGGAGTATGATAAGAAACAAGCAGAGAGATTGATGCTGGTAGGACTGTGGTGTGCTCACCCTGTTCGAAATGAAAGGCCCTCTATAAGGAAAGCAATTGAGTATATTCACTTTGATGCTGATTTGCCAAATCTTCCTAAGAAGATGCCTGTTCGAGTGTATCAGCAACCTACACCGCCGCCCTCAGTCAGCTCCACCGAAGCTTTAAGTACAAAAAGCCTTCAAGATGGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

665

Amino Acids

73.99

Weight (kDa)

6.31

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 28 - 263 1.9e-68 Legume lectin domain
PK_Tyr_Ser-Thr PF07714 355 - 619 2.5e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 356 - 621 2.6e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1063
Acc36I ACCTGC 2 cut(s) 1063, 1149
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 5 cut(s) 321, 1131, 1371, 1937, 1940
AclWI GGATC 6 cut(s) 503, 584, 1400, 1535, 1577, 1590
AcoI YGGCCR 1 cut(s) 1380
AcsI RAATTY 3 cut(s) 367, 770, 1149
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 6 cut(s) 247, 727, 852, 1096, 1596, 1972
AfiI CCNNNNNNNGG 4 cut(s) 155, 469, 806, 1848
AgsI TTSAA 5 cut(s) 775, 984, 1046, 1155, 1985
AhdI GACNNNNNGTC 1 cut(s) 657
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 4 cut(s) 805, 955, 1346, 1570
AloI GAACNNNNNNTCC 2 cut(s) 1256, 1288
Alw21I GWGCWC 3 cut(s) 530, 1446, 1819
Alw26I GTCTC 7 cut(s) 552, 644, 729, 815, 1210, 1443, 1541
Alw44I GTGCAC 1 cut(s) 1442
AlwI GGATC 6 cut(s) 503, 584, 1400, 1535, 1577, 1590
AoxI GGCC 4 cut(s) 207, 388, 1380, 1838
ApaLI GTGCAC 1 cut(s) 1442
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 3 cut(s) 367, 770, 1149
Asp700I GAANNNNTTC 1 cut(s) 1271
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 5 cut(s) 207, 472, 803, 1711, 1839
AsuC2I CCSGG 1 cut(s) 801
AsuHPI GGTGA 3 cut(s) 571, 1310, 1811
AsuII TTCGAA 1 cut(s) 1828
AvaII GGWCC 3 cut(s) 472, 803, 1711
BaeGI GKGCMC 1 cut(s) 1446
BaeI ACNNNNGTAYC 2 cut(s) 1119, 1152
BalI TGGCCA 1 cut(s) 1382
BamHI GGATCC 1 cut(s) 1582
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 1274
Bbv12I GWGCWC 3 cut(s) 530, 1446, 1819
BbvI GCAGC 1 cut(s) 330
BccI CCATC 4 cut(s) 548, 883, 1239, 1982
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 4 cut(s) 807, 957, 1348, 1572
BciVI GTATCC 1 cut(s) 807
BcnI CCSGG 1 cut(s) 801
BcoDI GTCTC 7 cut(s) 552, 644, 729, 815, 1210, 1443, 1541
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 7 cut(s) 386, 657, 1092, 1482, 1499, 1538, 1611
BfmI CTRYAG 3 cut(s) 153, 583, 642
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 2 cut(s) 1063, 1149
BfuI GTATCC 1 cut(s) 807
BglI GCCNNNNNGGC 1 cut(s) 201
BglII AGATCT 1 cut(s) 831
BisI GCNGC 2 cut(s) 319, 1940
BlsI GCNGC 2 cut(s) 320, 1941
Bme1390I CCNGG 5 cut(s) 801, 807, 957, 1348, 1572
Bme18I GGWCC 3 cut(s) 472, 803, 1711
BmeRI GACNNNNNGTC 1 cut(s) 657
BmgT120I GGNCC 5 cut(s) 207, 472, 803, 1711, 1839
BmiI GGNNCC 7 cut(s) 6, 473, 474, 1012, 1028, 1584, 1712
BmrFI CCNGG 5 cut(s) 801, 807, 957, 1348, 1572
BmrI ACTGGG 1 cut(s) 1563
BmsI GCATC 6 cut(s) 97, 130, 1303, 1785, 1867, 1896
BmuI ACTGGG 1 cut(s) 1563
BpiI GAAGAC 1 cut(s) 1274
BpmI CTGGAG 1 cut(s) 1686
Bpu14I TTCGAA 1 cut(s) 1828
BpuEI CTTGAG 1 cut(s) 1234
BpuMI CCSGG 1 cut(s) 801
BsaBI GATNNNNATC 1 cut(s) 1410
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 815
BsaJI CCNNGG 3 cut(s) 533, 911, 1347
BsaXI ACNNNNNCTCC 2 cut(s) 1256, 1286
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 469, 806, 1848
Bse1I ACTGG 5 cut(s) 733, 854, 1558, 1669, 1698
Bse3DI GCAATG 2 cut(s) 1388, 1439
Bse8I GATNNNNATC 1 cut(s) 1410
BseBI CCWGG 4 cut(s) 807, 957, 1348, 1572
BseDI CCNNGG 3 cut(s) 533, 911, 1347
BseGI GGATG 6 cut(s) 288, 894, 1250, 1357, 1467, 1630
BseJI GATNNNNATC 1 cut(s) 1410
BseLI CCNNNNNNNGG 4 cut(s) 155, 469, 806, 1848
BseMI GCAATG 2 cut(s) 1388, 1439
BseMII CTCAG 6 cut(s) 210, 619, 687, 1059, 1612, 1959
BseNI ACTGG 5 cut(s) 733, 854, 1558, 1669, 1698
BseRI GAGGAG 4 cut(s) 662, 1023, 1277, 1778
BseSI GKGCMC 1 cut(s) 1446
BseXI GCAGC 1 cut(s) 330
BseYI CCCAGC 2 cut(s) 740, 884
BshFI GGCC 4 cut(s) 209, 390, 1382, 1840
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 3 cut(s) 530, 1446, 1819
BsiSI CCGG 3 cut(s) 420, 801, 1014
BsiWI CGTACG 1 cut(s) 245
BslFI GGGAC 4 cut(s) 485, 757, 1704, 1724
BslI CCNNNNNNNGG 4 cut(s) 155, 469, 806, 1848
BsmAI GTCTC 7 cut(s) 552, 644, 729, 815, 1210, 1443, 1541
BsmBI CGTCTC 1 cut(s) 729
BsmFI GGGAC 4 cut(s) 485, 757, 1704, 1724
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 4 cut(s) 209, 390, 1382, 1840
Bso31I GGTCTC 1 cut(s) 815
Bsp119I TTCGAA 1 cut(s) 1828
Bsp1286I GDGCHC 3 cut(s) 530, 1446, 1819
Bsp143I GATC 7 cut(s) 495, 576, 676, 831, 1405, 1540, 1582
BspACI CCGC 5 cut(s) 321, 1131, 1371, 1937, 1940
BspANI GGCC 4 cut(s) 209, 390, 1382, 1840
BspCNI CTCAG 6 cut(s) 211, 618, 688, 1060, 1611, 1958
BspHI TCATGA 2 cut(s) 15, 1402
BspLI GGNNCC 7 cut(s) 6, 473, 474, 1012, 1028, 1584, 1712
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 2 cut(s) 1063, 1149
BspPI GGATC 6 cut(s) 503, 584, 1400, 1535, 1577, 1590
BspT104I TTCGAA 1 cut(s) 1828
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 815
BsrDI GCAATG 2 cut(s) 1388, 1439
BsrI ACTGG 5 cut(s) 733, 854, 1558, 1669, 1698
BssECI CCNNGG 3 cut(s) 533, 911, 1347
BssMI GATC 7 cut(s) 495, 576, 676, 831, 1405, 1540, 1582
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 4 cut(s) 807, 957, 1348, 1572
Bst4CI ACNGT 6 cut(s) 410, 587, 709, 998, 1099, 1809
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 1828
BstC8I GCNNGC 3 cut(s) 76, 150, 526
BstDEI CTNAG 7 cut(s) 219, 605, 696, 1068, 1598, 1899, 1945
BstEII GGTNACC 1 cut(s) 1109
BstENI CCTNNNNNAGG 2 cut(s) 153, 1846
BstF5I GGATG 6 cut(s) 288, 894, 1250, 1357, 1467, 1630
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 7 cut(s) 498, 579, 679, 834, 1408, 1543, 1585
BstMAI GTCTC 7 cut(s) 552, 644, 729, 815, 1210, 1443, 1541
BstMBI GATC 7 cut(s) 495, 576, 676, 831, 1405, 1540, 1582
BstMWI GCNNNNNNNGC 3 cut(s) 149, 201, 215
BstNI CCWGG 4 cut(s) 807, 957, 1348, 1572
BstNSI RCATGY 1 cut(s) 491
BstPI GGTNACC 1 cut(s) 1109
BstSCI CCNGG 5 cut(s) 799, 805, 955, 1346, 1570
BstSFI CTRYAG 3 cut(s) 153, 583, 642
BstSLI GKGCMC 1 cut(s) 1446
BstV1I GCAGC 1 cut(s) 330
BstV2I GAAGAC 1 cut(s) 1274
BstX2I RGATCY 3 cut(s) 831, 1540, 1582
BstYI RGATCY 3 cut(s) 831, 1540, 1582
BsuI GTATCC 1 cut(s) 807
BsuRI GGCC 4 cut(s) 209, 390, 1382, 1840
BtsCI GGATG 6 cut(s) 288, 894, 1250, 1357, 1467, 1630
BtsI GCAGTG 2 cut(s) 143, 1383
BtsIMutI CAGTG 7 cut(s) 143, 258, 415, 592, 613, 861, 1383
BveI ACCTGC 2 cut(s) 1063, 1149
Cac8I GCNNGC 3 cut(s) 76, 150, 526
CciI TCATGA 2 cut(s) 15, 1402
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 5 cut(s) 207, 472, 803, 1711, 1839
CseI GACGC 1 cut(s) 746
CsiI ACCWGGT 1 cut(s) 1570
Csp6I GTAC 6 cut(s) 246, 726, 851, 1095, 1595, 1971
CviAII CATG 4 cut(s) 16, 488, 1294, 1403
CviQI GTAC 6 cut(s) 246, 726, 851, 1095, 1595, 1971
DdeI CTNAG 7 cut(s) 219, 605, 696, 1068, 1598, 1899, 1945
DinI GGCGCC 1 cut(s) 6
DpnI GATC 7 cut(s) 497, 578, 678, 833, 1407, 1542, 1584
DpnII GATC 7 cut(s) 495, 576, 676, 831, 1405, 1540, 1582
DraIII CACNNNGTG 1 cut(s) 608
DriI GACNNNNNGTC 1 cut(s) 657
EaeI YGGCCR 1 cut(s) 1380
Eam1105I GACNNNNNGTC 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 533
Eco147I AGGCCT 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 815
Eco32I GATATC 1 cut(s) 353
Eco47I GGWCC 3 cut(s) 472, 803, 1711
Eco91I GGTNACC 1 cut(s) 1109
EcoNI CCTNNNNNAGG 2 cut(s) 153, 1846
EcoO109I RGGNCCY 3 cut(s) 472, 1711, 1839
EcoO65I GGTNACC 1 cut(s) 1109
EcoRI GAATTC 1 cut(s) 770
EcoRII CCWGG 4 cut(s) 805, 955, 1346, 1570
EcoRV GATATC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 533
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 533
Esp3I CGTCTC 1 cut(s) 729
FaeI CATG 4 cut(s) 19, 491, 1297, 1406
FalI AAGNNNNNCTT 8 cut(s) 818, 850, 964, 996, 1015, 1047, 1716, 1748
FaqI GGGAC 4 cut(s) 485, 757, 1704, 1724
FatI CATG 4 cut(s) 15, 487, 1293, 1402
FauI CCCGC 1 cut(s) 1364
Fnu4HI GCNGC 2 cut(s) 319, 1940
FokI GGATG 6 cut(s) 275, 901, 1257, 1364, 1454, 1637
Fsp4HI GCNGC 2 cut(s) 319, 1940
FspBI CTAG 7 cut(s) 386, 657, 1092, 1482, 1499, 1538, 1611
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 319, 1940
GsaI CCCAGC 2 cut(s) 744, 888
GsuI CTGGAG 1 cut(s) 1686
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 209, 390, 1382, 1840
HapII CCGG 3 cut(s) 420, 801, 1014
HgaI GACGC 1 cut(s) 746
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 19, 491, 1297, 1406
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 2 cut(s) 1730, 1962
HinfI GANTC 5 cut(s) 225, 942, 1478, 1619, 1682
HpaII CCGG 3 cut(s) 420, 801, 1014
HphI GGTGA 3 cut(s) 571, 1310, 1811
Hpy166II GTNNAC 6 cut(s) 460, 904, 1102, 1285, 1444, 1681
Hpy188I TCNGA 7 cut(s) 756, 815, 879, 912, 1039, 1069, 1624
Hpy188III TCNNGA 9 cut(s) 16, 235, 457, 946, 992, 1403, 1544, 1586, 1985
Hpy8I GTNNAC 6 cut(s) 460, 904, 1102, 1285, 1444, 1681
HpyAV CCTTC 7 cut(s) 247, 463, 1017, 1076, 1124, 1324, 1991
HpyCH4III ACNGT 6 cut(s) 410, 587, 709, 998, 1099, 1809
HpyCH4IV ACGT 1 cut(s) 1271
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 201, 215
HpyF3I CTNAG 7 cut(s) 219, 605, 696, 1068, 1598, 1899, 1945
HpySE526I ACGT 1 cut(s) 1271
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 19, 491, 1297, 1406
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KflI GGGWCCC 1 cut(s) 472
Kzo9I GATC 7 cut(s) 495, 576, 676, 831, 1405, 1540, 1582
LmnI GCTCC 5 cut(s) 346, 618, 959, 1010, 1958
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 6 cut(s) 97, 130, 1303, 1785, 1867, 1896
MabI ACCWGGT 1 cut(s) 1570
MaeI CTAG 7 cut(s) 386, 657, 1092, 1482, 1499, 1538, 1611
MaeII ACGT 1 cut(s) 1271
MaeIII GTNAC 6 cut(s) 256, 410, 703, 946, 1001, 1109
MalI GATC 7 cut(s) 497, 578, 678, 833, 1407, 1542, 1584
MboI GATC 7 cut(s) 495, 576, 676, 831, 1405, 1540, 1582
MfeI CAATTG 2 cut(s) 613, 1857
MflI RGATCY 3 cut(s) 831, 1540, 1582
MhlI GDGCHC 3 cut(s) 530, 1446, 1819
MlsI TGGCCA 1 cut(s) 1382
MluNI TGGCCA 1 cut(s) 1382
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 1472, 1628, 1676
MmeI TCCRAC 1 cut(s) 1602
Mox20I TGGCCA 1 cut(s) 1382
MroXI GAANNNNTTC 1 cut(s) 1271
MscI TGGCCA 1 cut(s) 1382
MseI TTAA 5 cut(s) 836, 1343, 1455, 1488, 1967
MslI CAYNNNNRTG 1 cut(s) 1875
Msp20I TGGCCA 1 cut(s) 1382
MspA1I CMGCKG 5 cut(s) 321, 374, 722, 1133, 1742
MspI CCGG 3 cut(s) 420, 801, 1014
MspR9I CCNGG 5 cut(s) 801, 807, 957, 1348, 1572
MunI CAATTG 2 cut(s) 613, 1857
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 4 cut(s) 807, 957, 1348, 1572
MwoI GCNNNNNNNGC 3 cut(s) 149, 201, 215
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 801
NdeII GATC 7 cut(s) 495, 576, 676, 831, 1405, 1540, 1582
NlaIII CATG 4 cut(s) 19, 491, 1297, 1406
NlaIV GGNNCC 7 cut(s) 6, 473, 474, 1012, 1028, 1584, 1712
NmeAIII GCCGAG 1 cut(s) 1498
NmuCI GTSAC 5 cut(s) 256, 410, 703, 946, 1001
NspI RCATGY 1 cut(s) 491
NspV TTCGAA 1 cut(s) 1828
PagI TCATGA 2 cut(s) 15, 1402
PaqCI CACCTGC 1 cut(s) 1063
PceI AGGCCT 1 cut(s) 390
PctI GAATGC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 1271
PfeI GAWTC 2 cut(s) 225, 942
Pfl23II CGTACG 1 cut(s) 245
PkrI GCNGC 2 cut(s) 320, 1941
PleI GAGTC 3 cut(s) 1472, 1627, 1676
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 1472, 1627, 1676
PpuMI RGGWCCY 2 cut(s) 472, 1711
Psp5II RGGWCCY 2 cut(s) 472, 1711
Psp6I CCWGG 4 cut(s) 805, 955, 1346, 1570
PspEI GGTNACC 1 cut(s) 1109
PspFI CCCAGC 2 cut(s) 740, 884
PspGI CCWGG 4 cut(s) 805, 955, 1346, 1570
PspLI CGTACG 1 cut(s) 245
PspN4I GGNNCC 7 cut(s) 6, 473, 474, 1012, 1028, 1584, 1712
PspPI GGNCC 5 cut(s) 207, 472, 803, 1711, 1839
PspPPI RGGWCCY 2 cut(s) 472, 1711
PstI CTGCAG 1 cut(s) 646
PsuI RGATCY 3 cut(s) 831, 1540, 1582
PvuII CAGCTG 3 cut(s) 374, 722, 1742
RsaI GTAC 6 cut(s) 247, 727, 852, 1096, 1596, 1972
RsaNI GTAC 6 cut(s) 246, 726, 851, 1095, 1595, 1971
RseI CAYNNNNRTG 1 cut(s) 1875
SaqAI TTAA 5 cut(s) 836, 1343, 1455, 1488, 1967
SatI GCNGC 2 cut(s) 319, 1940
Sau3AI GATC 7 cut(s) 495, 576, 676, 831, 1405, 1540, 1582
Sau96I GGNCC 5 cut(s) 207, 472, 803, 1711, 1839
SchI GAGTC 3 cut(s) 1472, 1628, 1676
ScrFI CCNGG 5 cut(s) 801, 807, 957, 1348, 1572
SduI GDGCHC 3 cut(s) 530, 1446, 1819
SexAI ACCWGGT 1 cut(s) 1570
SfaNI GCATC 6 cut(s) 97, 130, 1303, 1785, 1867, 1896
SfcI CTRYAG 3 cut(s) 153, 583, 642
SfoI GGCGCC 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 1828
SinI GGWCC 3 cut(s) 472, 803, 1711
SmiMI CAYNNNNRTG 1 cut(s) 1875
SmlI CTYRAG 1 cut(s) 1213
SmoI CTYRAG 1 cut(s) 1213
SpeI ACTAGT 1 cut(s) 656
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 5 cut(s) 321, 1131, 1371, 1937, 1940
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 541
SspMI CTAG 7 cut(s) 386, 657, 1092, 1482, 1499, 1538, 1611
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 5 cut(s) 799, 805, 955, 1346, 1570
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 6 cut(s) 410, 587, 709, 998, 1099, 1809
TaiI ACGT 1 cut(s) 1274
TaqI TCGA 4 cut(s) 165, 779, 1828, 1915
TatI WGTACW 2 cut(s) 1594, 1970
TauI GCSGC 1 cut(s) 1942
TfiI GAWTC 2 cut(s) 225, 942
Tru1I TTAA 5 cut(s) 836, 1343, 1455, 1488, 1967
Tru9I TTAA 5 cut(s) 836, 1343, 1455, 1488, 1967
TscAI CASTG 7 cut(s) 150, 265, 415, 592, 613, 861, 1390
TseFI GTSAC 5 cut(s) 256, 410, 703, 946, 1001
TseI GCWGC 1 cut(s) 318
Tsp45I GTSAC 5 cut(s) 256, 410, 703, 946, 1001
TspDTI ATGAA 8 cut(s) 32, 654, 854, 855, 1282, 1391, 1406, 1848
TspGWI ACGGA 1 cut(s) 1205
TspRI CASTG 7 cut(s) 150, 265, 415, 592, 613, 861, 1390
VneI GTGCAC 1 cut(s) 1442
VpaK11BI GGWCC 3 cut(s) 472, 803, 1711
XagI CCTNNNNNAGG 2 cut(s) 153, 1846
XapI RAATTY 3 cut(s) 367, 770, 1149
XceI RCATGY 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 1271
XspI CTAG 7 cut(s) 386, 657, 1092, 1482, 1499, 1538, 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.