ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 4 - 72 | 2e-06 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 295 |
| Acc36I | ACCTGC | 1 cut(s) | 295 |
| Acc65I | GGTACC | 1 cut(s) | 238 |
| AccB1I | GGYRCC | 1 cut(s) | 238 |
| AccBSI | CCGCTC | 1 cut(s) | 42 |
| AccI | GTMKAC | 1 cut(s) | 326 |
| AciI | CCGC | 1 cut(s) | 40 |
| AclWI | GGATC | 2 cut(s) | 272, 291 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AfaI | GTAC | 1 cut(s) | 240 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 154, 261 |
| AgsI | TTSAA | 1 cut(s) | 34 |
| AjnI | CCWGG | 2 cut(s) | 23, 147 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 227, 259 |
| AlwI | GGATC | 2 cut(s) | 272, 291 |
| Asp718I | GGTACC | 1 cut(s) | 238 |
| AspA2I | CCTAGG | 1 cut(s) | 49 |
| AspLEI | GCGC | 1 cut(s) | 172 |
| AspS9I | GGNCC | 2 cut(s) | 37, 136 |
| AsuHPI | GGTGA | 3 cut(s) | 88, 259, 319 |
| AvaII | GGWCC | 2 cut(s) | 37, 136 |
| AvrII | CCTAGG | 1 cut(s) | 49 |
| BanI | GGYRCC | 1 cut(s) | 238 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 2 cut(s) | 25, 149 |
| BfaI | CTAG | 2 cut(s) | 50, 153 |
| BfuAI | ACCTGC | 1 cut(s) | 295 |
| BlnI | CCTAGG | 1 cut(s) | 49 |
| Bme1390I | CCNGG | 2 cut(s) | 25, 149 |
| Bme18I | GGWCC | 2 cut(s) | 37, 136 |
| BmgT120I | GGNCC | 2 cut(s) | 37, 136 |
| BmiI | GGNNCC | 2 cut(s) | 138, 240 |
| BmrFI | CCNGG | 2 cut(s) | 25, 149 |
| BsaJI | CCNNGG | 3 cut(s) | 24, 49, 173 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 102, 132 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 154, 261 |
| Bse3DI | GCAATG | 1 cut(s) | 86 |
| BseBI | CCWGG | 2 cut(s) | 25, 149 |
| BseDI | CCNNGG | 3 cut(s) | 24, 49, 173 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 154, 261 |
| BseMI | GCAATG | 1 cut(s) | 86 |
| BshNI | GGYRCC | 1 cut(s) | 238 |
| BslFI | GGGAC | 1 cut(s) | 97 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 154, 261 |
| BsmFI | GGGAC | 1 cut(s) | 97 |
| Bsp143I | GATC | 3 cut(s) | 62, 264, 296 |
| Bsp19I | CCATGG | 1 cut(s) | 173 |
| BspACI | CCGC | 1 cut(s) | 40 |
| BspLI | GGNNCC | 2 cut(s) | 138, 240 |
| BspMI | ACCTGC | 1 cut(s) | 295 |
| BspPI | GGATC | 2 cut(s) | 272, 291 |
| BspT107I | GGYRCC | 1 cut(s) | 238 |
| BsrBI | CCGCTC | 1 cut(s) | 42 |
| BsrDI | GCAATG | 1 cut(s) | 86 |
| BssECI | CCNNGG | 3 cut(s) | 24, 49, 173 |
| BssMI | GATC | 3 cut(s) | 62, 264, 296 |
| BssNAI | GTATAC | 1 cut(s) | 327 |
| BssT1I | CCWWGG | 2 cut(s) | 49, 173 |
| Bst1107I | GTATAC | 1 cut(s) | 327 |
| Bst2UI | CCWGG | 2 cut(s) | 25, 149 |
| Bst4CI | ACNGT | 1 cut(s) | 243 |
| Bst6I | CTCTTC | 1 cut(s) | 93 |
| BstDSI | CCRYGG | 1 cut(s) | 173 |
| BstHHI | GCGC | 1 cut(s) | 172 |
| BstKTI | GATC | 3 cut(s) | 65, 267, 299 |
| BstMBI | GATC | 3 cut(s) | 62, 264, 296 |
| BstNI | CCWGG | 2 cut(s) | 25, 149 |
| BstSCI | CCNGG | 2 cut(s) | 23, 147 |
| BstX2I | RGATCY | 1 cut(s) | 296 |
| BstYI | RGATCY | 1 cut(s) | 296 |
| BstZ17I | GTATAC | 1 cut(s) | 327 |
| BtgI | CCRYGG | 1 cut(s) | 173 |
| BveI | ACCTGC | 1 cut(s) | 295 |
| CfoI | GCGC | 1 cut(s) | 172 |
| Cfr13I | GGNCC | 2 cut(s) | 37, 136 |
| Csp6I | GTAC | 1 cut(s) | 239 |
| CviAII | CATG | 3 cut(s) | 69, 174, 194 |
| CviJI | RGCY | 4 cut(s) | 104, 152, 200, 206 |
| CviKI_1 | RGCY | 4 cut(s) | 104, 152, 200, 206 |
| CviQI | GTAC | 1 cut(s) | 239 |
| DpnI | GATC | 3 cut(s) | 64, 266, 298 |
| DpnII | GATC | 3 cut(s) | 62, 264, 296 |
| Eam1104I | CTCTTC | 1 cut(s) | 93 |
| EarI | CTCTTC | 1 cut(s) | 93 |
| Eco130I | CCWWGG | 2 cut(s) | 49, 173 |
| Eco47I | GGWCC | 2 cut(s) | 37, 136 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| EcoRII | CCWGG | 2 cut(s) | 23, 147 |
| EcoT14I | CCWWGG | 2 cut(s) | 49, 173 |
| ErhI | CCWWGG | 2 cut(s) | 49, 173 |
| FaeI | CATG | 3 cut(s) | 72, 177, 197 |
| FaiI | YATR | 6 cut(s) | 56, 70, 175, 195, 213, 327 |
| FaqI | GGGAC | 1 cut(s) | 97 |
| FatI | CATG | 3 cut(s) | 68, 173, 193 |
| FblI | GTMKAC | 1 cut(s) | 326 |
| FspBI | CTAG | 2 cut(s) | 50, 153 |
| GlaI | GCGC | 1 cut(s) | 171 |
| HhaI | GCGC | 1 cut(s) | 172 |
| Hin1II | CATG | 3 cut(s) | 72, 177, 197 |
| Hin6I | GCGC | 1 cut(s) | 170 |
| HinP1I | GCGC | 1 cut(s) | 170 |
| HphI | GGTGA | 3 cut(s) | 88, 259, 319 |
| Hpy166II | GTNNAC | 2 cut(s) | 126, 327 |
| Hpy188I | TCNGA | 3 cut(s) | 136, 296, 301 |
| Hpy188III | TCNNGA | 1 cut(s) | 345 |
| Hpy8I | GTNNAC | 2 cut(s) | 126, 327 |
| HpyAV | CCTTC | 3 cut(s) | 55, 101, 229 |
| HpyCH4III | ACNGT | 1 cut(s) | 243 |
| HpyCH4IV | ACGT | 1 cut(s) | 269 |
| HpyCH4V | TGCA | 3 cut(s) | 68, 91, 274 |
| HpySE526I | ACGT | 1 cut(s) | 269 |
| Hsp92II | CATG | 3 cut(s) | 72, 177, 197 |
| HspAI | GCGC | 1 cut(s) | 170 |
| KpnI | GGTACC | 1 cut(s) | 242 |
| Kzo9I | GATC | 3 cut(s) | 62, 264, 296 |
| LmnI | GCTCC | 1 cut(s) | 47 |
| LpnPI | CCDG | 6 cut(s) | 10, 37, 134, 161, 300, 330 |
| MaeI | CTAG | 2 cut(s) | 50, 153 |
| MaeII | ACGT | 1 cut(s) | 269 |
| MalI | GATC | 3 cut(s) | 64, 266, 298 |
| MbiI | CCGCTC | 1 cut(s) | 42 |
| MboI | GATC | 3 cut(s) | 62, 264, 296 |
| MboII | GAAGA | 1 cut(s) | 110 |
| MfeI | CAATTG | 1 cut(s) | 228 |
| MflI | RGATCY | 1 cut(s) | 296 |
| MluCI | AATT | 1 cut(s) | 228 |
| MnlI | CCTC | 6 cut(s) | 66, 94, 104, 156, 265, 309 |
| MseI | TTAA | 1 cut(s) | 183 |
| MslI | CAYNNNNRTG | 1 cut(s) | 192 |
| MspR9I | CCNGG | 2 cut(s) | 25, 149 |
| MunI | CAATTG | 1 cut(s) | 228 |
| MvaI | CCWGG | 2 cut(s) | 25, 149 |
| NcoI | CCATGG | 1 cut(s) | 173 |
| NdeII | GATC | 3 cut(s) | 62, 264, 296 |
| NlaIII | CATG | 3 cut(s) | 72, 177, 197 |
| NlaIV | GGNNCC | 2 cut(s) | 138, 240 |
| PaqCI | CACCTGC | 1 cut(s) | 295 |
| Psp6I | CCWGG | 2 cut(s) | 23, 147 |
| PspGI | CCWGG | 2 cut(s) | 23, 147 |
| PspN4I | GGNNCC | 2 cut(s) | 138, 240 |
| PspPI | GGNCC | 2 cut(s) | 37, 136 |
| PsuI | RGATCY | 1 cut(s) | 296 |
| RsaI | GTAC | 1 cut(s) | 240 |
| RsaNI | GTAC | 1 cut(s) | 239 |
| RseI | CAYNNNNRTG | 1 cut(s) | 192 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| Sau3AI | GATC | 3 cut(s) | 62, 264, 296 |
| Sau96I | GGNCC | 2 cut(s) | 37, 136 |
| ScrFI | CCNGG | 2 cut(s) | 25, 149 |
| SetI | ASST | 7 cut(s) | 39, 55, 115, 240, 272, 280, 289 |
| SinI | GGWCC | 2 cut(s) | 37, 136 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 192 |
| Sse9I | AATT | 1 cut(s) | 228 |
| SsiI | CCGC | 1 cut(s) | 40 |
| SspMI | CTAG | 2 cut(s) | 50, 153 |
| StyD4I | CCNGG | 2 cut(s) | 23, 147 |
| StyI | CCWWGG | 2 cut(s) | 49, 173 |
| TaaI | ACNGT | 1 cut(s) | 243 |
| TaiI | ACGT | 1 cut(s) | 272 |
| TaqI | TCGA | 2 cut(s) | 61, 96 |
| TasI | AATT | 1 cut(s) | 228 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TspDTI | ATGAA | 1 cut(s) | 182 |
| VpaK11BI | GGWCC | 2 cut(s) | 37, 136 |
| XmaJI | CCTAGG | 1 cut(s) | 49 |
| XmiI | GTMKAC | 1 cut(s) | 326 |
| XspI | CTAG | 2 cut(s) | 50, 153 |