Rmu_sc0001702.1_g000030

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001702.1
OG0000187
Physical Location & Seq
Forward (+)
91833 .. 93230
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001702.1_g000030.1.cds

Sequence Viewer

Length: 1059 bp
atgagttccgttgatgccatggctgcccgactcgcctcctctcttgtactagcagagagaaagaagaaggtagatctccgtccatcgcaaggtaagggcttgcggcaatctgaagtctttatggttgggaaactcctcactgctagggagttcaaagtttgctccttcctaggtatgttcagatatgcttggagggtcaatgggacgctgcaagttgaagaagctgaaggaggtcgggttttgttcactttttctgatcctacagatcgggctagggtttggaggggtgcgccatgggggtttaactgtgctgttgtagctttggcggagtatgatggggttatgccaattgagagggtgcctttggtaaagtcctcatattggatcacactgcagggtattccacatgcatttagatatgaaagggtgatgataatgatcggatatactttgggagattttcaagagactgataagcaggggaagaaggttggaaagtatgataagctgtttgggagatgtggagtgtgtggtttgatcactcatgttaggttgtcatgctcgaggccggtgttgaacgaagaagatgatgctgcagagcgcacagtattagggtcatcgacgatggagcaaggtagtgctatgcagatcaatattggagccttgaatacgggatcgggttatgaaggttgcagtcaagcagctacgttcactcctagggtttcgttcaatgggcatagtttgatcttcaagactcaactccctaggatgatcccaagaagggagggaggccagtgggaagcaaaaactctagagcatgctgatatggggctggtctcattgccacataatgatcaaggcatggtgaagaagaagggagggaggccagtgggaagcaaaaataaaatctcatctggtacggcgggcaagttgaaggactcgaaggtagatggtactgggaagtggaggtctacaaagaagagtctgttgaccaacttgaatggtgcagatgctattacaagctctaattttaaaggaaatgagctagttgtggcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

352

Amino Acids

38.55

Weight (kDa)

9.64

Isoelectric Point (pI)

26.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 971
AciI CCGC 3 cut(s) 103, 326, 923
AclWI GGATC 4 cut(s) 251, 392, 682, 766
AcuI CTGAAG 2 cut(s) 132, 246
AfaI GTAC 3 cut(s) 48, 919, 955
AfiI CCNNNNNNNGG 3 cut(s) 89, 381, 781
AgsI TTSAA 9 cut(s) 154, 218, 464, 577, 667, 730, 751, 934, 1000
AluBI AGCT 6 cut(s) 224, 320, 508, 704, 1023, 1045
AluI AGCT 6 cut(s) 224, 320, 508, 704, 1023, 1045
Alw26I GTCTC 2 cut(s) 461, 841
AlwI GGATC 4 cut(s) 251, 392, 682, 766
Ama87I CYCGRG 1 cut(s) 562
AoxI GGCC 3 cut(s) 566, 790, 884
ApeKI GCWGC 4 cut(s) 23, 208, 593, 701
AspA2I CCTAGG 3 cut(s) 169, 716, 764
AspLEI GCGC 2 cut(s) 292, 603
AsuHPI GGTGA 2 cut(s) 439, 877
AvaI CYCGRG 1 cut(s) 562
AvrII CCTAGG 3 cut(s) 169, 716, 764
BanI GGYRCC 1 cut(s) 358
BbvI GCAGC 4 cut(s) 10, 195, 580, 713
BccI CCATC 4 cut(s) 91, 329, 619, 944
BceAI ACGGC 1 cut(s) 936
BclI TGATCA 2 cut(s) 537, 853
BcoDI GTCTC 2 cut(s) 461, 841
BfaI CTAG 8 cut(s) 50, 144, 170, 273, 717, 765, 812, 1046
BfmI CTRYAG 3 cut(s) 261, 392, 594
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 24, 104, 209, 594, 702
BlnI CCTAGG 3 cut(s) 169, 716, 764
BlsI GCNGC 5 cut(s) 25, 105, 210, 595, 703
BmeT110I CYCGRG 1 cut(s) 562
BmiI GGNNCC 2 cut(s) 360, 661
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 3 cut(s) 4, 580, 1000
BmuI ACTGGG 1 cut(s) 966
BsaBI GATNNNNATC 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 5 cut(s) 18, 169, 293, 716, 764
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 697, 727
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 381, 781
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 3 cut(s) 793, 887, 961
Bse3DI GCAATG 1 cut(s) 839
Bse8I GATNNNNATC 1 cut(s) 437
BseDI CCNNGG 5 cut(s) 18, 169, 293, 716, 764
BseGI GGATG 1 cut(s) 774
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 3 cut(s) 89, 381, 781
BseMI GCAATG 1 cut(s) 839
BseNI ACTGG 3 cut(s) 793, 887, 961
BseRI GAGGAG 2 cut(s) 28, 125
BseXI GCAGC 4 cut(s) 10, 195, 580, 713
BsgI GTGCAG 1 cut(s) 1026
BshFI GGCC 3 cut(s) 568, 792, 886
BshNI GGYRCC 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 562
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 3 cut(s) 89, 381, 781
BsmAI GTCTC 2 cut(s) 461, 841
BsmFI GGGAC 1 cut(s) 217
BsnI GGCC 3 cut(s) 568, 792, 886
Bso31I GGTCTC 1 cut(s) 841
BsoBI CYCGRG 1 cut(s) 562
Bsp19I CCATGG 2 cut(s) 18, 293
BspACI CCGC 3 cut(s) 103, 326, 923
BspANI GGCC 3 cut(s) 568, 792, 886
BspLI GGNNCC 2 cut(s) 360, 661
BspMAI CTGCAG 2 cut(s) 396, 598
BspPI GGATC 4 cut(s) 251, 392, 682, 766
BspT107I GGYRCC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 841
BsrDI GCAATG 1 cut(s) 839
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 3 cut(s) 793, 887, 961
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 5 cut(s) 18, 169, 293, 716, 764
BssT1I CCWWGG 5 cut(s) 18, 169, 293, 716, 764
Bst4CI ACNGT 2 cut(s) 308, 607
Bst6I CTCTTC 1 cut(s) 974
BstC8I GCNNGC 3 cut(s) 101, 819, 925
BstDSI CCRYGG 2 cut(s) 18, 293
BstF5I GGATG 1 cut(s) 774
BstHHI GCGC 2 cut(s) 292, 603
BstMAI GTCTC 2 cut(s) 461, 841
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 317
BstNSI RCATGY 2 cut(s) 410, 821
BstSFI CTRYAG 3 cut(s) 261, 392, 594
BstV1I GCAGC 4 cut(s) 10, 195, 580, 713
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 3 cut(s) 568, 792, 886
BtgI CCRYGG 2 cut(s) 18, 293
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 774
BtsI GCAGTG 2 cut(s) 138, 389
BtsIMutI CAGTG 4 cut(s) 138, 389, 800, 894
Cac8I GCNNGC 3 cut(s) 101, 819, 925
CfoI GCGC 2 cut(s) 292, 603
Cfr10I RCCGGY 1 cut(s) 568
CseI GACGC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 47, 918, 954
CviAII CATG 7 cut(s) 19, 294, 407, 545, 558, 818, 862
CviQI GTAC 3 cut(s) 47, 918, 954
DraI TTTAAA 1 cut(s) 1033
Eam1104I CTCTTC 1 cut(s) 974
EarI CTCTTC 1 cut(s) 974
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 5 cut(s) 18, 169, 293, 716, 764
Eco31I GGTCTC 1 cut(s) 841
Eco57I CTGAAG 2 cut(s) 132, 246
Eco88I CYCGRG 1 cut(s) 562
EcoT14I CCWWGG 5 cut(s) 18, 169, 293, 716, 764
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 5 cut(s) 18, 169, 293, 716, 764
FaeI CATG 7 cut(s) 22, 297, 410, 548, 561, 821, 865
FaqI GGGAC 1 cut(s) 217
FatI CATG 7 cut(s) 18, 293, 406, 544, 557, 817, 861
FauI CCCGC 1 cut(s) 916
FbaI TGATCA 2 cut(s) 537, 853
FblI GTMKAC 1 cut(s) 971
Fnu4HI GCNGC 5 cut(s) 24, 104, 209, 594, 702
FokI GGATG 1 cut(s) 781
Fsp4HI GCNGC 5 cut(s) 24, 104, 209, 594, 702
FspBI CTAG 8 cut(s) 50, 144, 170, 273, 717, 765, 812, 1046
GlaI GCGC 2 cut(s) 291, 602
GluI GCNGC 5 cut(s) 24, 104, 209, 594, 702
HaeIII GGCC 3 cut(s) 568, 792, 886
HapII CCGG 1 cut(s) 569
HgaI GACGC 1 cut(s) 214
HhaI GCGC 2 cut(s) 292, 603
Hin1II CATG 7 cut(s) 22, 297, 410, 548, 561, 821, 865
Hin6I GCGC 2 cut(s) 290, 601
HinP1I GCGC 2 cut(s) 290, 601
HincII GTYRAC 1 cut(s) 990
HindII GTYRAC 1 cut(s) 990
HinfI GANTC 4 cut(s) 30, 754, 938, 982
HpaII CCGG 1 cut(s) 569
HphI GGTGA 2 cut(s) 439, 877
Hpy166II GTNNAC 4 cut(s) 246, 711, 972, 990
Hpy188I TCNGA 4 cut(s) 112, 182, 256, 443
Hpy188III TCNNGA 3 cut(s) 464, 751, 812
Hpy8I GTNNAC 4 cut(s) 246, 711, 972, 990
Hpy99I CGWCG 1 cut(s) 625
HpyAV CCTTC 9 cut(s) 61, 175, 221, 481, 680, 774, 868, 928, 937
HpyCH4III ACNGT 2 cut(s) 308, 607
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 7 cut(s) 211, 394, 410, 596, 646, 693, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 317
HpySE526I ACGT 1 cut(s) 707
Hsp92II CATG 7 cut(s) 22, 297, 410, 548, 561, 821, 865
HspAI GCGC 2 cut(s) 290, 601
Ksp22I TGATCA 2 cut(s) 537, 853
LmnI GCTCC 3 cut(s) 167, 628, 659
LpnPI CCDG 8 cut(s) 380, 464, 582, 806, 818, 900, 900, 942
Lsp1109I GCAGC 4 cut(s) 10, 195, 580, 713
LweI GCATC 3 cut(s) 4, 580, 1000
MaeI CTAG 8 cut(s) 50, 144, 170, 273, 717, 765, 812, 1046
MaeII ACGT 1 cut(s) 707
MboII GAAGA 9 cut(s) 76, 230, 496, 593, 596, 739, 880, 883, 991
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 73
MluCI AATT 2 cut(s) 348, 1027
MlyI GAGTC 4 cut(s) 24, 748, 932, 991
MmeI TCCRAC 1 cut(s) 472
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 2 cut(s) 303, 1032
MspI CCGG 1 cut(s) 569
MunI CAATTG 1 cut(s) 348
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 317
NcoI CCATGG 2 cut(s) 18, 293
NlaIII CATG 7 cut(s) 22, 297, 410, 548, 561, 821, 865
NlaIV GGNNCC 2 cut(s) 360, 661
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 2 cut(s) 410, 821
PaeI GCATGC 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 562
PkrI GCNGC 5 cut(s) 25, 105, 210, 595, 703
PleI GAGTC 4 cut(s) 24, 748, 932, 990
PpsI GAGTC 4 cut(s) 24, 748, 932, 990
PspN4I GGNNCC 2 cut(s) 360, 661
PspXI VCTCGAGB 1 cut(s) 562
PstI CTGCAG 2 cut(s) 396, 598
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 3 cut(s) 48, 919, 955
RsaNI GTAC 3 cut(s) 47, 918, 954
SaqAI TTAA 2 cut(s) 303, 1032
SatI GCNGC 5 cut(s) 24, 104, 209, 594, 702
SchI GAGTC 4 cut(s) 24, 748, 932, 991
SfaNI GCATC 3 cut(s) 4, 580, 1000
SfcI CTRYAG 3 cut(s) 261, 392, 594
Sfr274I CTCGAG 1 cut(s) 562
SlaI CTCGAG 1 cut(s) 562
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
SphI GCATGC 1 cut(s) 821
Sse9I AATT 2 cut(s) 348, 1027
SsiI CCGC 3 cut(s) 103, 326, 923
SspI AATATT 1 cut(s) 655
SspMI CTAG 8 cut(s) 50, 144, 170, 273, 717, 765, 812, 1046
StyI CCWWGG 5 cut(s) 18, 169, 293, 716, 764
TaaI ACNGT 2 cut(s) 308, 607
TaiI ACGT 1 cut(s) 710
TaqI TCGA 3 cut(s) 563, 620, 941
TasI AATT 2 cut(s) 348, 1027
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 303, 1032
Tru9I TTAA 2 cut(s) 303, 1032
TscAI CASTG 4 cut(s) 145, 396, 800, 894
TseI GCWGC 4 cut(s) 23, 208, 593, 701
TspDTI ATGAA 2 cut(s) 435, 699
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 4 cut(s) 145, 396, 800, 894
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 2 cut(s) 410, 821
XhoI CTCGAG 1 cut(s) 562
XmaJI CCTAGG 3 cut(s) 169, 716, 764
XmiI GTMKAC 1 cut(s) 971
XspI CTAG 8 cut(s) 50, 144, 170, 273, 717, 765, 812, 1046
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.