Rmu_sc0006453.1_g000054

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006453.1
OG0000187
Physical Location & Seq
Reverse (-)
159447 .. 160712
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006453.1_g000054.1.cds

Sequence Viewer

Length: 981 bp
atgagttccgttgatgccatggctgcccgactcgcctcctctcttgcactggcagagggaaagaagaaggtagatctccgtccatcgcaaggcaatggcttgcgacaatctgaagtttttatggtgggaaaactcctcactgctagggggttcaagttccgttccttcctaggtatgtttcgatctgcctggagggtcaatgggacactacaagttgaagaagccgaaggaggtagggttttgttcactttttcagagcctacagaccgagctagggtttggaggggtgcaccatggggttttaaccgtgctcctgtggctttggctgagccattgtcctttcaacattggtattgggtggaggacacggtggagtttctatgcaaattcagggccgccgcggtggcggagggtaatgccatgcagttcgggatcagcggcttgactacggggtcgggttctgaaggttgcatccatgaagctgcgttcaatcctagggtttcttttaatgggcacagtttgatcttcaagactcaactccctaggatgatcccggagcaactcctgtgcaatcctacatatttggtgcaaaaaccacatcgtaaggtaagcattagagagatagatgagtctgatggtatggtggaattattaacaggcaagcgtcgttctagggttgaggctaaaatcaccatatctccaaagaaactcaaattgagtttggcagttggtaaaaaaaatctggagcctgctgatatggagctggtctcactgtcacagaatgttcaaggcatggtgaagaagaagagagggaggccggtggaaagcaaaaataaaatcccatctggtaccgcgacaaagatgaaggacttgaaggtagatggcgtgaagtctgctaagaaaagtcttttgtctaacttgactggtgcagatgctactgaaagctctaatctgaaaggaaaggagctagttgtggcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

326

Amino Acids

35.78

Weight (kDa)

9.98

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 451
Acc65I GGTACC 1 cut(s) 848
AccB1I GGYRCC 1 cut(s) 848
AccII CGCG 2 cut(s) 401, 854
AciI CCGC 6 cut(s) 396, 399, 401, 407, 438, 852
AclWI GGATC 2 cut(s) 440, 544
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 2 cut(s) 132, 483
AfaI GTAC 1 cut(s) 850
AfiI CCNNNNNNNGG 2 cut(s) 89, 274
AgsI TTSAA 7 cut(s) 154, 218, 344, 490, 529, 788, 874
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 5 cut(s) 272, 482, 763, 945, 967
AluI AGCT 5 cut(s) 272, 482, 763, 945, 967
Alw21I GWGCWC 2 cut(s) 292, 313
Alw26I GTCTC 1 cut(s) 772
Alw44I GTGCAC 1 cut(s) 288
AlwI GGATC 2 cut(s) 440, 544
AoxI GGCC 2 cut(s) 393, 815
ApaLI GTGCAC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 23, 482
ApoI RAATTY 1 cut(s) 386
Asp718I GGTACC 1 cut(s) 848
AspA2I CCTAGG 3 cut(s) 169, 494, 542
AspS9I GGNCC 1 cut(s) 393
AsuC2I CCSGG 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 682, 808
AvrII CCTAGG 3 cut(s) 169, 494, 542
BaeGI GKGCMC 2 cut(s) 292, 516
BanI GGYRCC 1 cut(s) 848
Bbv12I GWGCWC 2 cut(s) 292, 313
BbvI GCAGC 2 cut(s) 10, 469
BccI CCATC 4 cut(s) 91, 629, 850, 875
BciT130I CCWGG 1 cut(s) 190
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 1 cut(s) 772
BfaI CTAG 7 cut(s) 144, 170, 273, 495, 543, 672, 968
BfmI CTRYAG 1 cut(s) 261
BglI GCCNNNNNGGC 1 cut(s) 404
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 24, 396, 399, 439, 483
BlnI CCTAGG 3 cut(s) 169, 494, 542
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 5 cut(s) 25, 397, 400, 440, 484
Bme1390I CCNGG 2 cut(s) 190, 554
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 2 cut(s) 747, 850
BmrFI CCNGG 2 cut(s) 190, 554
BmsI GCATC 3 cut(s) 4, 480, 922
BplI GAGNNNNNCTC 2 cut(s) 752, 784
BpmI CTGGAG 2 cut(s) 211, 764
Bpu1102I GCTNAGC 1 cut(s) 327
BpuMI CCSGG 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 772
BsaJI CCNNGG 6 cut(s) 18, 169, 293, 399, 494, 542
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 682, 712
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 274
Bse118I RCCGGY 1 cut(s) 817
Bse1I ACTGG 2 cut(s) 54, 928
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 6 cut(s) 18, 169, 293, 399, 494, 542
BseGI GGATG 2 cut(s) 471, 552
BseLI CCNNNNNNNGG 2 cut(s) 89, 274
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 54, 928
BseRI GAGGAG 2 cut(s) 28, 125
BseSI GKGCMC 2 cut(s) 292, 516
BseXI GCAGC 2 cut(s) 10, 469
BsgI GTGCAG 1 cut(s) 948
Bsh1236I CGCG 2 cut(s) 401, 854
BshFI GGCC 2 cut(s) 395, 817
BshNI GGYRCC 1 cut(s) 848
BsiHKAI GWGCWC 2 cut(s) 292, 313
BsiSI CCGG 2 cut(s) 554, 818
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 89, 274
BsmAI GTCTC 1 cut(s) 772
BsmFI GGGAC 1 cut(s) 217
BsnI GGCC 2 cut(s) 395, 817
Bso31I GGTCTC 1 cut(s) 772
Bsp1286I GDGCHC 3 cut(s) 292, 313, 516
Bsp143I GATC 5 cut(s) 73, 182, 432, 522, 549
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 2 cut(s) 18, 293
BspACI CCGC 6 cut(s) 396, 399, 401, 407, 438, 852
BspANI GGCC 2 cut(s) 395, 817
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 2 cut(s) 401, 854
BspLI GGNNCC 2 cut(s) 747, 850
BspPI GGATC 2 cut(s) 440, 544
BspT107I GGYRCC 1 cut(s) 848
BspTNI GGTCTC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 817
BsrI ACTGG 2 cut(s) 54, 928
BssAI RCCGGY 1 cut(s) 817
BssECI CCNNGG 6 cut(s) 18, 169, 293, 399, 494, 542
BssMI GATC 5 cut(s) 73, 182, 432, 522, 549
BssT1I CCWWGG 5 cut(s) 18, 169, 293, 494, 542
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 4 cut(s) 308, 370, 518, 774
Bst6I CTCTTC 1 cut(s) 800
BstC8I GCNNGC 3 cut(s) 101, 662, 750
BstDEI CTNAG 2 cut(s) 327, 897
BstDSI CCRYGG 3 cut(s) 18, 293, 399
BstF5I GGATG 2 cut(s) 471, 552
BstFNI CGCG 2 cut(s) 401, 854
BstKTI GATC 5 cut(s) 76, 185, 435, 525, 552
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 5 cut(s) 73, 182, 432, 522, 549
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 404
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 188, 552
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 2 cut(s) 292, 516
BstUI CGCG 2 cut(s) 401, 854
BstV1I GCAGC 2 cut(s) 10, 469
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 395, 817
BtgI CCRYGG 3 cut(s) 18, 293, 399
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 471, 552
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 47, 138, 770
Cac8I GCNNGC 3 cut(s) 101, 662, 750
Cfr10I RCCGGY 1 cut(s) 817
Cfr13I GGNCC 1 cut(s) 393
Cfr42I CCGCGG 1 cut(s) 402
CseI GACGC 1 cut(s) 653
Csp6I GTAC 1 cut(s) 849
CviAII CATG 5 cut(s) 19, 294, 421, 476, 793
CviQI GTAC 1 cut(s) 849
DdeI CTNAG 2 cut(s) 327, 897
DpnI GATC 5 cut(s) 75, 184, 434, 524, 551
DpnII GATC 5 cut(s) 73, 182, 432, 522, 549
DrdI GACNNNNNNGTC 1 cut(s) 451
DseDI GACNNNNNNGTC 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 5 cut(s) 18, 169, 293, 494, 542
Eco31I GGTCTC 1 cut(s) 772
Eco57I CTGAAG 2 cut(s) 132, 483
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 5 cut(s) 18, 169, 293, 494, 542
ErhI CCWWGG 5 cut(s) 18, 169, 293, 494, 542
FaeI CATG 5 cut(s) 22, 297, 424, 479, 796
FaqI GGGAC 1 cut(s) 217
FatI CATG 5 cut(s) 18, 293, 420, 475, 792
Fnu4HI GCNGC 5 cut(s) 24, 396, 399, 439, 483
FokI GGATG 2 cut(s) 458, 559
Fsp4HI GCNGC 5 cut(s) 24, 396, 399, 439, 483
FspBI CTAG 7 cut(s) 144, 170, 273, 495, 543, 672, 968
GluI GCNGC 5 cut(s) 24, 396, 399, 439, 483
GsuI CTGGAG 2 cut(s) 211, 764
HaeIII GGCC 2 cut(s) 395, 817
HapII CCGG 2 cut(s) 554, 818
HgaI GACGC 1 cut(s) 653
Hin1II CATG 5 cut(s) 22, 297, 424, 479, 796
HinfI GANTC 3 cut(s) 30, 532, 629
HpaII CCGG 2 cut(s) 554, 818
HphI GGTGA 2 cut(s) 682, 808
Hpy166II GTNNAC 2 cut(s) 246, 290
Hpy188I TCNGA 5 cut(s) 112, 256, 463, 634, 954
Hpy188III TCNNGA 3 cut(s) 430, 529, 743
Hpy8I GTNNAC 2 cut(s) 246, 290
Hpy99I CGWCG 1 cut(s) 669
HpyAV CCTTC 6 cut(s) 61, 175, 221, 458, 859, 868
HpyCH4III ACNGT 4 cut(s) 308, 370, 518, 774
HpyCH4V TGCA 8 cut(s) 47, 290, 384, 424, 471, 570, 589, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 404
HpyF3I CTNAG 2 cut(s) 327, 897
Hsp92II CATG 5 cut(s) 22, 297, 424, 479, 796
KpnI GGTACC 1 cut(s) 852
KspI CCGCGG 1 cut(s) 402
Kzo9I GATC 5 cut(s) 73, 182, 432, 522, 549
LmnI GCTCC 5 cut(s) 316, 556, 745, 760, 964
Lsp1109I GCAGC 2 cut(s) 10, 469
LweI GCATC 3 cut(s) 4, 480, 922
MaeI CTAG 7 cut(s) 144, 170, 273, 495, 543, 672, 968
MaeIII GTNAC 1 cut(s) 774
MalI GATC 5 cut(s) 75, 184, 434, 524, 551
MboI GATC 5 cut(s) 73, 182, 432, 522, 549
MboII GAAGA 6 cut(s) 76, 230, 517, 811, 814, 817
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 292, 313, 516
MluCI AATT 3 cut(s) 386, 647, 713
MlyI GAGTC 3 cut(s) 24, 526, 638
MseI TTAA 3 cut(s) 303, 507, 653
MspA1I CMGCKG 2 cut(s) 401, 438
MspI CCGG 2 cut(s) 554, 818
MspR9I CCNGG 2 cut(s) 190, 554
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 2 cut(s) 401, 854
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 404
NciI CCSGG 1 cut(s) 554
NcoI CCATGG 2 cut(s) 18, 293
NdeII GATC 5 cut(s) 73, 182, 432, 522, 549
NlaIII CATG 5 cut(s) 22, 297, 424, 479, 796
NlaIV GGNNCC 2 cut(s) 747, 850
NmuCI GTSAC 1 cut(s) 774
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 5 cut(s) 25, 397, 400, 440, 484
PleI GAGTC 3 cut(s) 24, 526, 637
PpsI GAGTC 3 cut(s) 24, 526, 637
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 747, 850
PspPI GGNCC 1 cut(s) 393
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 1 cut(s) 850
RsaNI GTAC 1 cut(s) 849
SacII CCGCGG 1 cut(s) 402
SaqAI TTAA 3 cut(s) 303, 507, 653
SatI GCNGC 5 cut(s) 24, 396, 399, 439, 483
Sau3AI GATC 5 cut(s) 73, 182, 432, 522, 549
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 3 cut(s) 24, 526, 638
ScrFI CCNGG 2 cut(s) 190, 554
SduI GDGCHC 3 cut(s) 292, 313, 516
SfaNI GCATC 3 cut(s) 4, 480, 922
SfcI CTRYAG 1 cut(s) 261
Sfr303I CCGCGG 1 cut(s) 402
SgrBI CCGCGG 1 cut(s) 402
Sse9I AATT 3 cut(s) 386, 647, 713
SsiI CCGC 6 cut(s) 396, 399, 401, 407, 438, 852
SspMI CTAG 7 cut(s) 144, 170, 273, 495, 543, 672, 968
StyD4I CCNGG 2 cut(s) 188, 552
StyI CCWWGG 5 cut(s) 18, 169, 293, 494, 542
TaaI ACNGT 4 cut(s) 308, 370, 518, 774
TaqI TCGA 1 cut(s) 181
TaqII GACCGA 1 cut(s) 282
TasI AATT 3 cut(s) 386, 647, 713
TauI GCSGC 3 cut(s) 398, 401, 441
Tru1I TTAA 3 cut(s) 303, 507, 653
Tru9I TTAA 3 cut(s) 303, 507, 653
TscAI CASTG 3 cut(s) 54, 145, 777
TseFI GTSAC 1 cut(s) 774
TseI GCWGC 2 cut(s) 23, 482
Tsp45I GTSAC 1 cut(s) 774
TspDTI ATGAA 2 cut(s) 492, 878
TspGWI ACGGA 2 cut(s) 68, 149
TspRI CASTG 3 cut(s) 54, 145, 777
VneI GTGCAC 1 cut(s) 288
XapI RAATTY 1 cut(s) 386
XmaJI CCTAGG 3 cut(s) 169, 494, 542
XspI CTAG 7 cut(s) 144, 170, 273, 495, 543, 672, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.