Rmu_sc0000007.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000007.1
OG0000187
Physical Location & Seq
Forward (+)
1929 .. 3203
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000007.1_g000002.1.cds

Sequence Viewer

Length: 1275 bp
atgtcttctgttgatgcaatggctgctagactagcctcctctcttgctatcgctgaaggcaagaggcagattgatctgcgaccaacgcagggcaaaggtttgcgacaggcaaacgttttcttggtgggtaagcttctcaccgctcgtgatttcaaggtcaaatccttcttggggatgttccgcaacgcctggaggattaatgggtcgttgcaggtggaggaggcagaagagcagcgggtgctcttcacgttgtcggatccggctgatcgagttcgaatctggcgtggtgctccatggggatataatcacgctccggtggctttggcttggtatgatggtgtcatgccggtggagaaggtgcctttaactaggtcatcatattggatcactcttcagaagataccaccggcgttcaggtcggagcgcgtcatgaccatgatcggttatacgctgggggacttccaggaaattgataagaatgccaagaaaacggggcaactccggattagggttgagataccgctgaataaaccattgcccttcaagcgatggtacttggtggaggatgaggtagacttttgctgtcaattccgatatgataaactctttgggcggtgttcagtgtgtgggctagtcacgcacgtggggttgccttgctcagggccggcgctggatgaagatgatgatgaagcagagcgcactgttctagggtctcagaccgtgatgccggagatgcatagtgggggttcgtcaaggcaaggagcctgggcgggatccacatcaggcactgctactggtgtgcgagttaggggttctaacccatgtcctccgttggtgtttcggactcctgatcccagtccgagtggggagccaggtctgactgttccagctatgaagccgaaacgacaagtgctggtccgtgaccttcaggagacagcagagtctccggaacgcataactggcaaacgtcggggacgtgaagacagcatgactatctcccctaagaaactaaagctgagtttggcggtggggaaaaaaaatctcattcttgactcggagaatcttggtttggaccttatacaggaggaggatcacgctgggagtatgaagcggaaacgcggccgaccttttggaagtaggaataagccatcatctggtgctaagaagcatacctcaaaacatgctgaaggcaaggcccaggacaagtctccaaagaagaagcaagttgtggggaaacactccaacccaacagggaaggagttggctctcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

424

Amino Acids

46.93

Weight (kDa)

9.76

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
AasI GACNNNNNNGTC 1 cut(s) 940
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 1154
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 573
AccII CGCG 2 cut(s) 426, 1119
AccIII TCCGGA 2 cut(s) 501, 946
AciI CCGC 9 cut(s) 141, 181, 235, 521, 613, 770, 1025, 1111, 1119
AclI AACGTT 1 cut(s) 114
AclWI GGATC 7 cut(s) 251, 264, 392, 768, 781, 845, 1098
AcoI YGGCCR 1 cut(s) 1120
AcuI CTGAAG 4 cut(s) 75, 377, 911, 1206
AcvI CACGTG 1 cut(s) 643
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 6 cut(s) 89, 171, 508, 659, 1081, 1154
AgsI TTSAA 2 cut(s) 154, 544
AjiI CACGTC 1 cut(s) 977
AjnI CCWGG 5 cut(s) 188, 462, 764, 871, 1197
AjuI GAANNNNNNNTTGG 2 cut(s) 1052, 1084
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 3 cut(s) 133, 890, 1015
AluI AGCT 3 cut(s) 133, 890, 1015
Alw21I GWGCWC 2 cut(s) 243, 292
Alw26I GTCTC 4 cut(s) 717, 926, 948, 1212
AlwI GGATC 7 cut(s) 251, 264, 392, 768, 781, 845, 1098
AlwNI CAGNNNCTG 1 cut(s) 788
Aor13HI TCCGGA 2 cut(s) 501, 946
AoxI GGCC 3 cut(s) 662, 1120, 1194
ApeKI GCWGC 2 cut(s) 23, 232
AseI ATTAAT 1 cut(s) 198
AspLEI GCGC 3 cut(s) 426, 670, 699
AspS9I GGNCC 4 cut(s) 662, 916, 1072, 1195
AsuHPI GGTGA 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 274
AvaII GGWCC 2 cut(s) 916, 1072
BamHI GGATCC 2 cut(s) 256, 773
BanI GGYRCC 1 cut(s) 358
BauI CACGAG 1 cut(s) 144
BbrPI CACGTG 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 987
Bbv12I GWGCWC 2 cut(s) 243, 292
BbvI GCAGC 2 cut(s) 10, 244
BccI CCATC 3 cut(s) 329, 543, 1156
BciT130I CCWGG 5 cut(s) 190, 464, 766, 873, 1199
BcoDI GTCTC 4 cut(s) 717, 926, 948, 1212
BfaI CTAG 5 cut(s) 27, 32, 369, 632, 707
BfoI RGCGCY 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 3 cut(s) 24, 233, 1120
BlsI GCNGC 3 cut(s) 25, 234, 1121
Bme1390I CCNGG 5 cut(s) 190, 464, 766, 873, 1199
Bme18I GGWCC 2 cut(s) 916, 1072
BmgBI CACGTC 1 cut(s) 977
BmgT120I GGNCC 4 cut(s) 662, 916, 1072, 1195
BmiI GGNNCC 5 cut(s) 258, 360, 763, 775, 870
BmrFI CCNGG 5 cut(s) 190, 464, 766, 873, 1199
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 3 cut(s) 4, 714, 723
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 1 cut(s) 987
BpmI CTGGAG 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 658
Bpu14I TTCGAA 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 778
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 3 cut(s) 293, 765, 1197
BsaWI WCCGGW 3 cut(s) 313, 501, 946
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 171, 508, 659, 1081, 1154
Bse118I RCCGGY 3 cut(s) 346, 406, 664
Bse1I ACTGG 3 cut(s) 799, 855, 964
Bse3DI GCAATG 2 cut(s) 24, 533
Bse8I GATNNNNATC 1 cut(s) 778
BseAI TCCGGA 2 cut(s) 501, 946
BseBI CCWGG 5 cut(s) 190, 464, 766, 873, 1199
BseDI CCNNGG 3 cut(s) 293, 765, 1197
BseGI GGATG 3 cut(s) 180, 571, 679
BseJI GATNNNNATC 1 cut(s) 778
BseLI CCNNNNNNNGG 6 cut(s) 89, 171, 508, 659, 1081, 1154
BseMI GCAATG 2 cut(s) 24, 533
BseMII CTCAG 3 cut(s) 672, 728, 1007
BseNI ACTGG 3 cut(s) 799, 855, 964
BseRI GAGGAG 3 cut(s) 28, 233, 1100
BseX3I CGGCCG 1 cut(s) 1120
BseXI GCAGC 2 cut(s) 10, 244
BseYI CCCAGC 2 cut(s) 451, 1097
Bsh1236I CGCG 2 cut(s) 426, 1119
Bsh1285I CGRYCG 1 cut(s) 1123
BshFI GGCC 3 cut(s) 664, 1122, 1196
BshNI GGYRCC 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 1123
BsiHKAI GWGCWC 2 cut(s) 243, 292
BsiSI CCGG 8 cut(s) 260, 314, 347, 407, 502, 665, 728, 947
BslFI GGGAC 2 cut(s) 470, 987
BslI CCNNNNNNNGG 6 cut(s) 89, 171, 508, 659, 1081, 1154
BsmAI GTCTC 4 cut(s) 717, 926, 948, 1212
BsmFI GGGAC 2 cut(s) 470, 987
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 3 cut(s) 664, 1122, 1196
Bso31I GGTCTC 1 cut(s) 717
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 243, 292
Bsp13I TCCGGA 2 cut(s) 501, 946
Bsp143I GATC 8 cut(s) 73, 256, 265, 384, 438, 773, 850, 1090
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 9 cut(s) 141, 181, 235, 521, 613, 770, 1025, 1111, 1119
BspANI GGCC 3 cut(s) 664, 1122, 1196
BspCNI CTCAG 3 cut(s) 671, 727, 1008
BspEI TCCGGA 2 cut(s) 501, 946
BspFNI CGCG 2 cut(s) 426, 1119
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 5 cut(s) 258, 360, 763, 775, 870
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 7 cut(s) 251, 264, 392, 768, 781, 845, 1098
BspQI GCTCTTC 2 cut(s) 222, 248
BspT104I TTCGAA 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 717
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 2 cut(s) 24, 533
BsrFI RCCGGY 3 cut(s) 346, 406, 664
BsrI ACTGG 3 cut(s) 799, 855, 964
BssAI RCCGGY 3 cut(s) 346, 406, 664
BssECI CCNNGG 3 cut(s) 293, 765, 1197
BssMI GATC 8 cut(s) 73, 256, 265, 384, 438, 773, 850, 1090
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 5 cut(s) 190, 464, 766, 873, 1199
Bst4CI ACNGT 3 cut(s) 703, 721, 883
Bst6I CTCTTC 3 cut(s) 222, 248, 396
BstAPI GCANNNNNTGC 2 cut(s) 23, 238
BstBAI YACGTR 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 5 cut(s) 658, 714, 1002, 1016, 1161
BstDSI CCRYGG 1 cut(s) 293
BstENI CCTNNNNNAGG 2 cut(s) 657, 1079
BstF5I GGATG 3 cut(s) 180, 571, 679
BstFNI CGCG 2 cut(s) 426, 1119
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 3 cut(s) 426, 670, 699
BstKTI GATC 8 cut(s) 76, 259, 268, 387, 441, 776, 853, 1093
BstMAI GTCTC 4 cut(s) 717, 926, 948, 1212
BstMBI GATC 8 cut(s) 73, 256, 265, 384, 438, 773, 850, 1090
BstMCI CGRYCG 1 cut(s) 1123
BstMWI GCNNNNNNNGC 9 cut(s) 23, 32, 85, 238, 317, 544, 637, 733, 960
BstNI CCWGG 5 cut(s) 190, 464, 766, 873, 1199
BstNSI RCATGY 1 cut(s) 1184
BstSCI CCNGG 5 cut(s) 188, 462, 764, 871, 1197
BstUI CGCG 2 cut(s) 426, 1119
BstV1I GCAGC 2 cut(s) 10, 244
BstV2I GAAGAC 1 cut(s) 987
BstX2I RGATCY 2 cut(s) 256, 773
BstYI RGATCY 2 cut(s) 256, 773
BstZI CGGCCG 1 cut(s) 1120
BsuRI GGCC 3 cut(s) 664, 1122, 1196
BtgI CCRYGG 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 562
BtrI CACGTC 1 cut(s) 977
BtsCI GGATG 3 cut(s) 180, 571, 679
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 3 cut(s) 627, 699, 786
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 666
CaiI CAGNNNCTG 1 cut(s) 788
CciI TCATGA 1 cut(s) 429
CfoI GCGC 3 cut(s) 426, 670, 699
Cfr10I RCCGGY 3 cut(s) 346, 406, 664
Cfr13I GGNCC 4 cut(s) 662, 916, 1072, 1195
CseI GACGC 1 cut(s) 415
Csp6I GTAC 1 cut(s) 553
CviAII CATG 7 cut(s) 294, 343, 430, 436, 822, 988, 1181
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 5 cut(s) 658, 714, 1002, 1016, 1161
DpnI GATC 8 cut(s) 75, 258, 267, 386, 440, 775, 852, 1092
DpnII GATC 8 cut(s) 73, 256, 265, 384, 438, 773, 850, 1090
DrdI GACNNNNNNGTC 1 cut(s) 940
DseDI GACNNNNNNGTC 1 cut(s) 940
EaeI YGGCCR 1 cut(s) 1120
EagI CGGCCG 1 cut(s) 1120
Eam1104I CTCTTC 3 cut(s) 222, 248, 396
EarI CTCTTC 3 cut(s) 222, 248, 396
EclXI CGGCCG 1 cut(s) 1120
Eco130I CCWWGG 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 916, 1072
Eco52I CGGCCG 1 cut(s) 1120
Eco57I CTGAAG 4 cut(s) 75, 377, 911, 1206
Eco72I CACGTG 1 cut(s) 643
EcoNI CCTNNNNNAGG 2 cut(s) 657, 1079
EcoRII CCWGG 5 cut(s) 188, 462, 764, 871, 1197
EcoT14I CCWWGG 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 738
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 7 cut(s) 297, 346, 433, 439, 825, 991, 1184
FaqI GGGAC 2 cut(s) 470, 987
FatI CATG 7 cut(s) 293, 342, 429, 435, 821, 987, 1180
FauI CCCGC 2 cut(s) 228, 763
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 3 cut(s) 24, 233, 1120
FokI GGATG 3 cut(s) 187, 578, 686
Fsp4HI GCNGC 3 cut(s) 24, 233, 1120
FspBI CTAG 5 cut(s) 27, 32, 369, 632, 707
GlaI GCGC 3 cut(s) 425, 669, 698
GluI GCNGC 3 cut(s) 24, 233, 1120
GsaI CCCAGC 2 cut(s) 455, 1101
GsuI CTGGAG 1 cut(s) 211
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 3 cut(s) 664, 1122, 1196
HapII CCGG 8 cut(s) 260, 314, 347, 407, 502, 665, 728, 947
HgaI GACGC 1 cut(s) 415
HhaI GCGC 3 cut(s) 426, 670, 699
Hin1II CATG 7 cut(s) 297, 346, 433, 439, 825, 991, 1184
Hin6I GCGC 3 cut(s) 424, 668, 697
HinP1I GCGC 3 cut(s) 424, 668, 697
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 5 cut(s) 276, 844, 941, 1052, 1060
HpaII CCGG 8 cut(s) 260, 314, 347, 407, 502, 665, 728, 947
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 9 cut(s) 256, 396, 421, 593, 717, 843, 861, 879, 1057
Hpy188III TCNNGA 7 cut(s) 146, 430, 502, 848, 929, 947, 1049
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 1 cut(s) 972
HpyAV CCTTC 7 cut(s) 50, 175, 349, 550, 935, 1181, 1249
HpyCH4III ACNGT 3 cut(s) 703, 721, 883
HpyCH4IV ACGT 5 cut(s) 114, 248, 642, 967, 976
HpyCH4V TGCA 3 cut(s) 17, 211, 736
HpyF10VI GCNNNNNNNGC 9 cut(s) 23, 32, 85, 238, 317, 544, 637, 733, 960
HpyF3I CTNAG 5 cut(s) 658, 714, 1002, 1016, 1161
HpySE526I ACGT 5 cut(s) 114, 248, 642, 967, 976
Hsp92II CATG 7 cut(s) 297, 346, 433, 439, 825, 991, 1184
HspAI GCGC 3 cut(s) 424, 668, 697
Kpn2I TCCGGA 2 cut(s) 501, 946
KroI GCCGGC 1 cut(s) 664
KroNI GCCGGC 1 cut(s) 666
Kzo9I GATC 8 cut(s) 73, 256, 265, 384, 438, 773, 850, 1090
LguI GCTCTTC 2 cut(s) 222, 248
LmnI GCTCC 5 cut(s) 295, 316, 421, 761, 868
Lsp1109I GCAGC 2 cut(s) 10, 244
LweI GCATC 3 cut(s) 4, 714, 723
MaeI CTAG 5 cut(s) 27, 32, 369, 632, 707
MaeII ACGT 5 cut(s) 114, 248, 642, 967, 976
MaeIII GTNAC 2 cut(s) 634, 920
MalI GATC 8 cut(s) 75, 258, 267, 386, 440, 775, 852, 1092
MbiI CCGCTC 1 cut(s) 143
MboI GATC 8 cut(s) 73, 256, 265, 384, 438, 773, 850, 1090
MboII GAAGA 7 cut(s) 235, 239, 383, 409, 689, 992, 1228
MflI RGATCY 2 cut(s) 256, 773
MhlI GDGCHC 2 cut(s) 243, 292
MluCI AATT 2 cut(s) 468, 587
MlyI GAGTC 3 cut(s) 838, 950, 1046
MmeI TCCRAC 3 cut(s) 234, 399, 1266
Mph1103I ATGCAT 1 cut(s) 738
MroI TCCGGA 2 cut(s) 501, 946
MroNI GCCGGC 1 cut(s) 664
MseI TTAA 3 cut(s) 198, 365, 1273
MslI CAYNNNNRTG 3 cut(s) 347, 434, 641
MspA1I CMGCKG 2 cut(s) 235, 523
MspI CCGG 8 cut(s) 260, 314, 347, 407, 502, 665, 728, 947
MspR9I CCNGG 5 cut(s) 190, 464, 766, 873, 1199
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 5 cut(s) 190, 464, 766, 873, 1199
MvnI CGCG 2 cut(s) 426, 1119
MwoI GCNNNNNNNGC 9 cut(s) 23, 32, 85, 238, 317, 544, 637, 733, 960
NaeI GCCGGC 1 cut(s) 666
NcoI CCATGG 1 cut(s) 293
NdeII GATC 8 cut(s) 73, 256, 265, 384, 438, 773, 850, 1090
NgoMIV GCCGGC 1 cut(s) 664
NlaIII CATG 7 cut(s) 297, 346, 433, 439, 825, 991, 1184
NlaIV GGNNCC 5 cut(s) 258, 360, 763, 775, 870
NmuCI GTSAC 2 cut(s) 634, 920
NsiI ATGCAT 1 cut(s) 738
NspI RCATGY 1 cut(s) 1184
NspV TTCGAA 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 641
PagI TCATGA 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 202
PciSI GCTCTTC 2 cut(s) 222, 248
PcsI WCGNNNNNNNCGW 2 cut(s) 280, 973
PctI GAATGC 1 cut(s) 484
PdiI GCCGGC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 276, 1060
PflMI CCANNNNNTGG 1 cut(s) 1154
PfoI TCCNGGA 1 cut(s) 462
PkrI GCNGC 3 cut(s) 25, 234, 1121
PleI GAGTC 3 cut(s) 838, 949, 1046
PmaCI CACGTG 1 cut(s) 643
PmlI CACGTG 1 cut(s) 643
PpsI GAGTC 3 cut(s) 838, 949, 1046
Ppu21I YACGTR 1 cut(s) 643
PshBI ATTAAT 1 cut(s) 198
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 5 cut(s) 188, 462, 764, 871, 1197
PspCI CACGTG 1 cut(s) 643
PspFI CCCAGC 2 cut(s) 451, 1097
PspGI CCWGG 5 cut(s) 188, 462, 764, 871, 1197
PspN4I GGNNCC 5 cut(s) 258, 360, 763, 775, 870
PspPI GGNCC 4 cut(s) 662, 916, 1072, 1195
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 2 cut(s) 256, 773
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 3 cut(s) 347, 434, 641
SapI GCTCTTC 2 cut(s) 222, 248
SaqAI TTAA 3 cut(s) 198, 365, 1273
SatI GCNGC 3 cut(s) 24, 233, 1120
Sau3AI GATC 8 cut(s) 73, 256, 265, 384, 438, 773, 850, 1090
Sau96I GGNCC 4 cut(s) 662, 916, 1072, 1195
SchI GAGTC 3 cut(s) 838, 950, 1046
ScrFI CCNGG 5 cut(s) 190, 464, 766, 873, 1199
SduI GDGCHC 2 cut(s) 243, 292
SfaNI GCATC 3 cut(s) 4, 714, 723
SfuI TTCGAA 1 cut(s) 274
SgrAI CRCCGGYG 1 cut(s) 406
SinI GGWCC 2 cut(s) 916, 1072
SmiMI CAYNNNNRTG 3 cut(s) 347, 434, 641
Sse9I AATT 2 cut(s) 468, 587
SsiI CCGC 9 cut(s) 141, 181, 235, 521, 613, 770, 1025, 1111, 1119
SspMI CTAG 5 cut(s) 27, 32, 369, 632, 707
StyD4I CCNGG 5 cut(s) 188, 462, 764, 871, 1197
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 3 cut(s) 703, 721, 883
TaiI ACGT 5 cut(s) 117, 251, 645, 970, 979
TaqI TCGA 2 cut(s) 268, 274
TasI AATT 2 cut(s) 468, 587
TauI GCSGC 1 cut(s) 1122
TfiI GAWTC 2 cut(s) 276, 1060
Tru1I TTAA 3 cut(s) 198, 365, 1273
Tru9I TTAA 3 cut(s) 198, 365, 1273
TscAI CASTG 3 cut(s) 627, 706, 793
TseFI GTSAC 2 cut(s) 634, 920
TseI GCWGC 2 cut(s) 23, 232
Tsp45I GTSAC 2 cut(s) 634, 920
TspDTI ATGAA 4 cut(s) 690, 702, 908, 1121
TspGWI ACGGA 2 cut(s) 819, 908
TspRI CASTG 3 cut(s) 627, 706, 793
Van91I CCANNNNNTGG 1 cut(s) 1154
VpaK11BI GGWCC 2 cut(s) 916, 1072
VspI ATTAAT 1 cut(s) 198
XagI CCTNNNNNAGG 2 cut(s) 657, 1079
XceI RCATGY 1 cut(s) 1184
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 5 cut(s) 27, 32, 369, 632, 707
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.