Rmu_sc0001168.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001168.1
OG0000187
Physical Location & Seq
Forward (+)
14823 .. 15222
400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001168.1_g000005.1.cds

Sequence Viewer

Length: 306 bp
atgtgcaacatagaggcagttgacactgtagcagcgcggcaggcatcatctttgaccatcgtagaagggaagaagtctttcttgggcatgttccgatcagcttggaacgtgaatggactatttaatctagaggaagcagacagtggtagggttttgttcacgttctctgatccagctgacaaggctagggtttggagaagtgggccttggggatttaagcgtgcttcagcgtcgctcccatcgatgggatcccttcaagacataatcttactagatcttgctgcaggggattctgccggcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.84

Weight (kDa)

5.23

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 37
AciI CCGC 1 cut(s) 37
AclWI GGATC 3 cut(s) 164, 243, 256
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 244, 245
AgsI TTSAA 1 cut(s) 257
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 190, 222
AluBI AGCT 2 cut(s) 101, 176
AluI AGCT 2 cut(s) 101, 176
AlwI GGATC 3 cut(s) 164, 243, 256
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 32, 281
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 203
BamHI GGATCC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 44, 268
BccI CCATC 3 cut(s) 65, 238, 247
BfaI CTAG 3 cut(s) 128, 186, 272
BfmI CTRYAG 2 cut(s) 27, 282
BglII AGATCT 1 cut(s) 274
BisI GCNGC 3 cut(s) 33, 38, 282
BlsI GCNGC 3 cut(s) 34, 39, 283
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 250
BmsI GCATC 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 245
Bse118I RCCGGY 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 244, 245
BseXI GCAGC 2 cut(s) 44, 268
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 205
BshVI ATCGAT 1 cut(s) 242
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 244, 245
BsnI GGCC 1 cut(s) 205
Bsp143I GATC 4 cut(s) 95, 169, 248, 274
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 242
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 250
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 3 cut(s) 164, 243, 256
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 4 cut(s) 95, 169, 248, 274
BssT1I CCWWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 28, 143
BstC8I GCNNGC 3 cut(s) 42, 222, 298
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 4 cut(s) 98, 172, 251, 277
BstMBI GATC 4 cut(s) 95, 169, 248, 274
BstMWI GCNNNNNNNGC 2 cut(s) 41, 182
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 2 cut(s) 27, 282
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 44, 268
BstX2I RGATCY 2 cut(s) 248, 274
BstYI RGATCY 2 cut(s) 248, 274
Bsu15I ATCGAT 1 cut(s) 242
BsuRI GGCC 1 cut(s) 205
BsuTUI ATCGAT 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 24, 148
Cac8I GCNNGC 3 cut(s) 42, 222, 298
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 242
CseI GACGC 1 cut(s) 219
CviAII CATG 1 cut(s) 88
CviJI RGCY 5 cut(s) 101, 176, 185, 205, 300
CviKI_1 RGCY 5 cut(s) 101, 176, 185, 205, 300
DpnI GATC 4 cut(s) 97, 171, 250, 276
DpnII GATC 4 cut(s) 95, 169, 248, 274
Eco130I CCWWGG 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 11, 89, 263
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 190, 222
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 33, 38, 282
Fsp4HI GCNGC 3 cut(s) 33, 38, 282
FspBI CTAG 3 cut(s) 128, 186, 272
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 33, 38, 282
HaeIII GGCC 1 cut(s) 205
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 297
Hpy166II GTNNAC 2 cut(s) 22, 159
Hpy188I TCNGA 2 cut(s) 95, 169
Hpy188III TCNNGA 2 cut(s) 128, 257
Hpy8I GTNNAC 2 cut(s) 22, 159
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 59, 263
HpyCH4III ACNGT 2 cut(s) 28, 143
HpyCH4IV ACGT 2 cut(s) 108, 161
HpyCH4V TGCA 2 cut(s) 6, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 182
HpySE526I ACGT 2 cut(s) 108, 161
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 35
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 95, 169, 248, 274
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 3 cut(s) 26, 186, 270
Lsp1109I GCAGC 2 cut(s) 44, 268
LweI GCATC 1 cut(s) 53
MaeI CTAG 3 cut(s) 128, 186, 272
MaeII ACGT 2 cut(s) 108, 161
MalI GATC 4 cut(s) 97, 171, 250, 276
MboI GATC 4 cut(s) 95, 169, 248, 274
MboII GAAGA 1 cut(s) 82
MflI RGATCY 2 cut(s) 248, 274
MnlI CCTC 2 cut(s) 7, 124
MroNI GCCGGC 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 2 cut(s) 123, 216
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 41, 182
NaeI GCCGGC 1 cut(s) 298
NdeII GATC 4 cut(s) 95, 169, 248, 274
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 250
NspI RCATGY 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PdiI GCCGGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 3 cut(s) 34, 39, 283
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 2 cut(s) 248, 274
PvuII CAGCTG 1 cut(s) 176
SaqAI TTAA 2 cut(s) 123, 216
SatI GCNGC 3 cut(s) 33, 38, 282
Sau3AI GATC 4 cut(s) 95, 169, 248, 274
Sau96I GGNCC 1 cut(s) 203
SetI ASST 4 cut(s) 103, 111, 164, 178
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 2 cut(s) 27, 282
SsiI CCGC 1 cut(s) 37
SspMI CTAG 3 cut(s) 128, 186, 272
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 28, 143
TaiI ACGT 2 cut(s) 111, 164
TaqI TCGA 1 cut(s) 242
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 123, 216
Tru9I TTAA 2 cut(s) 123, 216
TscAI CASTG 2 cut(s) 31, 148
TseI GCWGC 2 cut(s) 32, 281
TspRI CASTG 2 cut(s) 31, 148
XbaI TCTAGA 1 cut(s) 127
XceI RCATGY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 3 cut(s) 128, 186, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.