Rmu_sc0002461.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002461.1
OG0000187
Physical Location & Seq
Reverse (-)
648 .. 2503
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002461.1_g000001.1.cds

Sequence Viewer

Length: 888 bp
atgtgtggctacttaaacagtggcaatgccaaagggcgaatcaatggatccttgcgggtggaggagacagacggtcagagggttctgttcactttgtcggatccttcggatcgagttcatatctggaagggtgctccatgggggtacaatcatgcaccagtggcgctggcatgttatgatggtgtgatgcccgtggaaaaggttcctctaaccatggcctcatactggataacactgcatggtattccccctgtgtttcggtctgaaagagtgatgactatgattggttacacacttggggattttcaggagatcgataagacagggaggaaggccagaaagcttcacattcgggtagaaatctcgctgaacaagccgctgccatttaaacattggtattggctggaagacgaggttgaattcctctgcaaattcaagtattacaaactgtttggccggtgctccatctgtggtttgatgacccatgtaggcttgccttgctcggggctgggattggaggaggatgatgatggggctgagaggatggtgttgggatcgcaaactgcacctacaccgtcggtgactttggctggagccggttgtggaaactcctctgagctctttcttgaacaaacctcggcgacaagtggtgatcagagagctccaggaaactgctatggcaccagattgagttaccgttctagtagtggaaaaaggaagcgaggttgtccggttggtagtaggaataaactgccatatggggagaaaaagaaaggtgcagcaaatgaggctgggcaagtgcagaaggctcccaaatcgaataaggtgaagactgcatctgctggtatgagctccaactcgaaagggaaggagctagttatttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

295

Amino Acids

32.27

Weight (kDa)

9.21

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 680
AciI CCGC 2 cut(s) 55, 377
AclWI GGATC 6 cut(s) 42, 55, 95, 108, 117, 562
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 2 cut(s) 419, 431
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 225, 503
AgsI TTSAA 3 cut(s) 419, 436, 629
AhdI GACNNNNNGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 5 cut(s) 343, 619, 662, 852, 874
AluI AGCT 5 cut(s) 343, 619, 662, 852, 874
Alw21I GWGCWC 5 cut(s) 136, 464, 621, 664, 854
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 6 cut(s) 42, 55, 95, 108, 117, 562
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 3 cut(s) 216, 333, 454
ApeKI GCWGC 2 cut(s) 379, 779
ApoI RAATTY 2 cut(s) 419, 431
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 592, 662, 838
AvaI CYCGRG 1 cut(s) 502
BamHI GGATCC 2 cut(s) 47, 100
BanI GGYRCC 1 cut(s) 680
BanII GRGCYC 3 cut(s) 621, 664, 854
BbsI GAAGAC 2 cut(s) 414, 836
Bbv12I GWGCWC 5 cut(s) 136, 464, 621, 664, 854
BbvI GCAGC 2 cut(s) 366, 791
BccI CCATC 4 cut(s) 173, 473, 524, 538
BciT130I CCWGG 1 cut(s) 666
BclI TGATCA 1 cut(s) 652
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 702, 875
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 3 cut(s) 377, 380, 780
BlsI GCNGC 3 cut(s) 378, 381, 781
Bme1390I CCNGG 1 cut(s) 666
BmeRI GACNNNNNGTC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 502
BmiI GGNNCC 6 cut(s) 49, 102, 204, 595, 682, 810
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 2 cut(s) 177, 845
BpiI GAAGAC 2 cut(s) 414, 836
BpmI CTGGAG 2 cut(s) 612, 648
Bsa29I ATCGAT 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 137, 192, 213, 636
BsaWI WCCGGW 1 cut(s) 730
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 503
Bse118I RCCGGY 2 cut(s) 456, 596
Bse1I ACTGG 2 cut(s) 158, 230
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 666
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 137, 192, 213, 636
BseGI GGATG 2 cut(s) 529, 549
BseLI CCNNNNNNNGG 2 cut(s) 225, 503
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 528, 606
BseNI ACTGG 2 cut(s) 158, 230
BseRI GAGGAG 3 cut(s) 77, 533, 601
BseXI GCAGC 2 cut(s) 366, 791
BseYI CCCAGC 2 cut(s) 508, 791
BsgI GTGCAG 3 cut(s) 549, 798, 821
BshFI GGCC 3 cut(s) 218, 335, 456
BshNI GGYRCC 1 cut(s) 680
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 5 cut(s) 136, 464, 621, 664, 854
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 3 cut(s) 457, 597, 731
BslI CCNNNNNNNGG 2 cut(s) 225, 503
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 3 cut(s) 218, 335, 456
BsoBI CYCGRG 1 cut(s) 502
Bsp1286I GDGCHC 5 cut(s) 136, 464, 621, 664, 854
Bsp143I GATC 6 cut(s) 47, 100, 109, 312, 554, 652
Bsp19I CCATGG 2 cut(s) 137, 213
BspACI CCGC 2 cut(s) 55, 377
BspANI GGCC 3 cut(s) 218, 335, 456
BspCNI CTCAG 2 cut(s) 529, 607
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 6 cut(s) 49, 102, 204, 595, 682, 810
BspPI GGATC 6 cut(s) 42, 55, 95, 108, 117, 562
BspT107I GGYRCC 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 2 cut(s) 456, 596
BsrI ACTGG 2 cut(s) 158, 230
BssAI RCCGGY 2 cut(s) 456, 596
BssECI CCNNGG 4 cut(s) 137, 192, 213, 636
BssMI GATC 6 cut(s) 47, 100, 109, 312, 554, 652
BssT1I CCWWGG 2 cut(s) 137, 213
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 5 cut(s) 20, 74, 450, 576, 698
BstC8I GCNNGC 2 cut(s) 168, 494
BstDEI CTNAG 2 cut(s) 537, 615
BstDSI CCRYGG 3 cut(s) 137, 192, 213
BstF5I GGATG 2 cut(s) 529, 549
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 6 cut(s) 50, 103, 112, 315, 557, 655
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 6 cut(s) 47, 100, 109, 312, 554, 652
BstMWI GCNNNNNNNGC 4 cut(s) 161, 373, 498, 788
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 664
BstV1I GCAGC 2 cut(s) 366, 791
BstV2I GAAGAC 2 cut(s) 414, 836
BstX2I RGATCY 2 cut(s) 47, 100
BstYI RGATCY 2 cut(s) 47, 100
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 3 cut(s) 218, 335, 456
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 3 cut(s) 137, 192, 213
BtsCI GGATG 2 cut(s) 529, 549
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 3 cut(s) 25, 165, 233
Cac8I GCNNGC 2 cut(s) 168, 494
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 2 cut(s) 456, 596
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 145
CviAII CATG 6 cut(s) 138, 152, 171, 214, 239, 485
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 537, 615
DpnI GATC 6 cut(s) 49, 102, 111, 314, 556, 654
DpnII GATC 6 cut(s) 47, 100, 109, 312, 554, 652
DraI TTTAAA 1 cut(s) 388
DriI GACNNNNNGTC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 454
Eam1105I GACNNNNNGTC 1 cut(s) 72
Ecl136II GAGCTC 3 cut(s) 619, 662, 852
Eco130I CCWWGG 2 cut(s) 137, 213
Eco24I GRGCYC 3 cut(s) 621, 664, 854
Eco53kI GAGCTC 3 cut(s) 619, 662, 852
Eco88I CYCGRG 1 cut(s) 502
EcoICRI GAGCTC 3 cut(s) 619, 662, 852
EcoRI GAATTC 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 137, 213
EcoT38I GRGCYC 3 cut(s) 621, 664, 854
ErhI CCWWGG 2 cut(s) 137, 213
FaeI CATG 6 cut(s) 141, 155, 174, 217, 242, 488
FatI CATG 6 cut(s) 137, 151, 170, 213, 238, 484
FauI CCCGC 1 cut(s) 48
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 3 cut(s) 377, 380, 780
FokI GGATG 2 cut(s) 536, 556
FriOI GRGCYC 3 cut(s) 621, 664, 854
Fsp4HI GCNGC 3 cut(s) 377, 380, 780
FspBI CTAG 2 cut(s) 702, 875
GlaI GCGC 1 cut(s) 165
GluI GCNGC 3 cut(s) 377, 380, 780
GsaI CCCAGC 2 cut(s) 512, 795
GsuI CTGGAG 2 cut(s) 612, 648
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 3 cut(s) 218, 335, 456
HapII CCGG 3 cut(s) 457, 597, 731
HhaI GCGC 1 cut(s) 166
Hin1II CATG 6 cut(s) 141, 155, 174, 217, 242, 488
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 1 cut(s) 39
HpaII CCGG 3 cut(s) 457, 597, 731
HphI GGTGA 3 cut(s) 592, 662, 838
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 6 cut(s) 78, 100, 109, 265, 616, 657
Hpy188III TCNNGA 3 cut(s) 124, 308, 626
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 5 cut(s) 114, 121, 325, 799, 862
HpyCH4III ACNGT 5 cut(s) 20, 74, 450, 576, 698
HpyCH4V TGCA 7 cut(s) 155, 238, 429, 566, 779, 802, 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 373, 498, 788
HpyF3I CTNAG 2 cut(s) 537, 615
Hsp92II CATG 6 cut(s) 141, 155, 174, 217, 242, 488
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 6 cut(s) 47, 100, 109, 312, 554, 652
LmnI GCTCC 7 cut(s) 139, 467, 593, 667, 814, 857, 871
Lsp1109I GCAGC 2 cut(s) 366, 791
LweI GCATC 2 cut(s) 177, 845
MaeI CTAG 2 cut(s) 702, 875
MaeIII GTNAC 3 cut(s) 287, 580, 692
MalI GATC 6 cut(s) 49, 102, 111, 314, 556, 654
MboI GATC 6 cut(s) 47, 100, 109, 312, 554, 652
MboII GAAGA 2 cut(s) 419, 841
MflI RGATCY 2 cut(s) 47, 100
MhlI GDGCHC 5 cut(s) 136, 464, 621, 664, 854
MluCI AATT 2 cut(s) 419, 431
MmeI TCCRAC 2 cut(s) 78, 879
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 2 cut(s) 14, 387
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 3 cut(s) 457, 597, 731
MspR9I CCNGG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 4 cut(s) 161, 373, 498, 788
NcoI CCATGG 2 cut(s) 137, 213
NdeI CATATG 1 cut(s) 757
NdeII GATC 6 cut(s) 47, 100, 109, 312, 554, 652
NlaIII CATG 6 cut(s) 141, 155, 174, 217, 242, 488
NlaIV GGNNCC 6 cut(s) 49, 102, 204, 595, 682, 810
NmeAIII GCCGAG 1 cut(s) 617
NmuCI GTSAC 1 cut(s) 580
NspI RCATGY 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 39
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 3 cut(s) 378, 381, 781
Psp124BI GAGCTC 3 cut(s) 621, 664, 854
Psp6I CCWGG 1 cut(s) 664
PspFI CCCAGC 2 cut(s) 508, 791
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 6 cut(s) 49, 102, 204, 595, 682, 810
PsuI RGATCY 2 cut(s) 47, 100
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 3 cut(s) 621, 664, 854
SaqAI TTAA 2 cut(s) 14, 387
SatI GCNGC 3 cut(s) 377, 380, 780
Sau3AI GATC 6 cut(s) 47, 100, 109, 312, 554, 652
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 5 cut(s) 136, 464, 621, 664, 854
SfaNI GCATC 2 cut(s) 177, 845
Sse9I AATT 2 cut(s) 419, 431
SsiI CCGC 2 cut(s) 55, 377
SspMI CTAG 2 cut(s) 702, 875
SstI GAGCTC 3 cut(s) 621, 664, 854
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 2 cut(s) 137, 213
TaaI ACNGT 5 cut(s) 20, 74, 450, 576, 698
TaqI TCGA 4 cut(s) 112, 315, 818, 860
TaqII GACCGA 1 cut(s) 249
TasI AATT 2 cut(s) 419, 431
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 2 cut(s) 14, 387
Tru9I TTAA 2 cut(s) 14, 387
TscAI CASTG 3 cut(s) 25, 165, 240
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 379, 779
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 3 cut(s) 25, 165, 240
XapI RAATTY 2 cut(s) 419, 431
XceI RCATGY 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 2 cut(s) 702, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.