Rmu_sc0004926.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004926.1
OG0000187
Physical Location & Seq
Forward (+)
14639 .. 15643
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004926.1_g000004.1.cds

Sequence Viewer

Length: 783 bp
atgagttccgttgatgccatggctgcccgactcgcctcctctcttgcactggcagagggaaagaagaaggtagatctccatccatcgcaaggtaagggcttgcggcaatctgaagtctttatggttgggaaactcctcactgctagggagttcaaggttcgctccttcctagatcctacaggccgggctagggtttggaagggtgcgccatgggggtttaaccgtgctcccgtggctttggtggagtatgatggggttatgccaattgagaatgtgcctttggtgaagtcctcctattggatcaaaatgcagggtattccaccagcatttagatctgaaagggtgatgacaatgatcaaatatactttgggagattttcaggagattcgtaagcaggggaagaaggttggcaagtaccagattcgggttgagattcctctgatcaggccattgtcctttcaacgatggtattgggtggaagacacaggggagtttttgtgcaaatttaggtatgataagctatttgggaggtgtggagtgtgtgaagtgtgtgggttgatcacccatgttgggctactgtgctcggggccggcgttgaatgaagaagatgatgctacaaatgataggagcatgtaccttggaataaatggagctgaaatgaagaaatggagttttcctgatccgactaggaatcccagtcaacccaggaatcttgatgaggctaggaaacctgaaggcattaggagaccacatgatgacgtgggagatattttgggagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

260

Amino Acids

29.4

Weight (kDa)

9.23

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 103
AclWI GGATC 3 cut(s) 167, 308, 674
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 2 cut(s) 132, 753
AfaI GTAC 2 cut(s) 416, 635
AfiI CCNNNNNNNGG 5 cut(s) 89, 190, 297, 424, 570
AgsI TTSAA 3 cut(s) 154, 461, 598
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 704
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 2 cut(s) 520, 653
AluI AGCT 2 cut(s) 520, 653
Alw21I GWGCWC 2 cut(s) 229, 584
Alw26I GTCTC 1 cut(s) 739
AlwI GGATC 3 cut(s) 167, 308, 674
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 3 cut(s) 181, 446, 587
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 503
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 295, 355, 553
AvaI CYCGRG 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 2 cut(s) 229, 584
BbvI GCAGC 1 cut(s) 10
BccI CCATC 4 cut(s) 87, 91, 245, 459
BciT130I CCWGG 1 cut(s) 706
BclI TGATCA 3 cut(s) 354, 441, 558
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 5 cut(s) 144, 170, 189, 687, 723
BfmI CTRYAG 1 cut(s) 177
BglII AGATCT 2 cut(s) 73, 332
BisI GCNGC 2 cut(s) 24, 104
BlsI GCNGC 2 cut(s) 25, 105
Bme1390I CCNGG 2 cut(s) 185, 706
BmeT110I CYCGRG 1 cut(s) 583
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 2 cut(s) 185, 706
BmrI ACTGGG 1 cut(s) 690
BmsI GCATC 2 cut(s) 4, 601
BmuI ACTGGG 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 486
BpuMI CCSGG 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 739
BsaJI CCNNGG 5 cut(s) 18, 209, 231, 637, 704
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 190, 297, 424, 570
Bse118I RCCGGY 1 cut(s) 589
Bse1I ACTGG 2 cut(s) 54, 696
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 5 cut(s) 18, 209, 231, 637, 704
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 5 cut(s) 89, 190, 297, 424, 570
BseNI ACTGG 2 cut(s) 54, 696
BseRI GAGGAG 2 cut(s) 28, 125
BseXI GCAGC 1 cut(s) 10
BshFI GGCC 3 cut(s) 183, 448, 589
BsiHKAI GWGCWC 2 cut(s) 229, 584
BsiHKCI CYCGRG 1 cut(s) 583
BsiSI CCGG 2 cut(s) 184, 590
BslI CCNNNNNNNGG 5 cut(s) 89, 190, 297, 424, 570
BsmAI GTCTC 1 cut(s) 739
BsnI GGCC 3 cut(s) 183, 448, 589
Bso31I GGTCTC 1 cut(s) 739
BsoBI CYCGRG 1 cut(s) 583
Bsp1286I GDGCHC 2 cut(s) 229, 584
Bsp143I GATC 8 cut(s) 73, 172, 300, 332, 354, 441, 558, 679
Bsp19I CCATGG 2 cut(s) 18, 209
BspACI CCGC 1 cut(s) 103
BspANI GGCC 3 cut(s) 183, 448, 589
BspLI GGNNCC 1 cut(s) 588
BspPI GGATC 3 cut(s) 167, 308, 674
BspTNI GGTCTC 1 cut(s) 739
BsrFI RCCGGY 1 cut(s) 589
BsrI ACTGG 2 cut(s) 54, 696
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 5 cut(s) 18, 209, 231, 637, 704
BssMI GATC 8 cut(s) 73, 172, 300, 332, 354, 441, 558, 679
BssT1I CCWWGG 3 cut(s) 18, 209, 637
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 2 cut(s) 224, 579
BstC8I GCNNGC 2 cut(s) 101, 591
BstDSI CCRYGG 3 cut(s) 18, 209, 231
BstF5I GGATG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 8 cut(s) 76, 175, 303, 335, 357, 444, 561, 682
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 8 cut(s) 73, 172, 300, 332, 354, 441, 558, 679
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 233
BstNI CCWGG 1 cut(s) 706
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 2 cut(s) 183, 704
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 3 cut(s) 73, 172, 332
BstYI RGATCY 3 cut(s) 73, 172, 332
BsuRI GGCC 3 cut(s) 183, 448, 589
BtgI CCRYGG 3 cut(s) 18, 209, 231
BtgZI GCGATG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 47, 138
Cac8I GCNNGC 2 cut(s) 101, 591
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 587
Csp6I GTAC 2 cut(s) 415, 634
CviAII CATG 5 cut(s) 19, 210, 566, 631, 752
CviQI GTAC 2 cut(s) 415, 634
DpnI GATC 8 cut(s) 75, 174, 302, 334, 356, 443, 560, 681
DpnII GATC 8 cut(s) 73, 172, 300, 332, 354, 441, 558, 679
Eco130I CCWWGG 3 cut(s) 18, 209, 637
Eco31I GGTCTC 1 cut(s) 739
Eco57I CTGAAG 2 cut(s) 132, 753
Eco88I CYCGRG 1 cut(s) 583
EcoRII CCWGG 1 cut(s) 704
EcoT14I CCWWGG 3 cut(s) 18, 209, 637
ErhI CCWWGG 3 cut(s) 18, 209, 637
FaeI CATG 5 cut(s) 22, 213, 569, 634, 755
FatI CATG 5 cut(s) 18, 209, 565, 630, 751
FbaI TGATCA 3 cut(s) 354, 441, 558
Fnu4HI GCNGC 2 cut(s) 24, 104
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 24, 104
FspBI CTAG 5 cut(s) 144, 170, 189, 687, 723
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 24, 104
HaeIII GGCC 3 cut(s) 183, 448, 589
HapII CCGG 2 cut(s) 184, 590
HhaI GCGC 1 cut(s) 208
Hin1II CATG 5 cut(s) 22, 213, 569, 634, 755
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 701
HindII GTYRAC 1 cut(s) 701
HinfI GANTC 6 cut(s) 30, 385, 421, 433, 691, 709
HpaII CCGG 2 cut(s) 184, 590
HphI GGTGA 3 cut(s) 295, 355, 553
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 4 cut(s) 112, 337, 441, 684
Hpy188III TCNNGA 3 cut(s) 380, 677, 713
Hpy8I GTNNAC 1 cut(s) 701
HpyAV CCTTC 5 cut(s) 61, 175, 193, 397, 728
HpyCH4III ACNGT 2 cut(s) 224, 579
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 3 cut(s) 47, 310, 501
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 233
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 5 cut(s) 22, 213, 569, 634, 755
HspAI GCGC 1 cut(s) 206
KroI GCCGGC 1 cut(s) 589
KroNI GCCGGC 1 cut(s) 591
Ksp22I TGATCA 3 cut(s) 354, 441, 558
Kzo9I GATC 8 cut(s) 73, 172, 300, 332, 354, 441, 558, 679
LmnI GCTCC 4 cut(s) 167, 232, 627, 650
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 2 cut(s) 4, 601
MaeI CTAG 5 cut(s) 144, 170, 189, 687, 723
MaeII ACGT 1 cut(s) 759
MalI GATC 8 cut(s) 75, 174, 302, 334, 356, 443, 560, 681
MboI GATC 8 cut(s) 73, 172, 300, 332, 354, 441, 558, 679
MboII GAAGA 6 cut(s) 76, 412, 491, 614, 617, 673
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 3 cut(s) 73, 172, 332
MhlI GDGCHC 2 cut(s) 229, 584
MluCI AATT 2 cut(s) 264, 503
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 707
MnlI CCTC 8 cut(s) 46, 49, 49, 146, 301, 447, 522, 712
MroNI GCCGGC 1 cut(s) 589
MseI TTAA 2 cut(s) 219, 781
MspI CCGG 2 cut(s) 184, 590
MspR9I CCNGG 2 cut(s) 185, 706
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 706
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 233
NaeI GCCGGC 1 cut(s) 591
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 2 cut(s) 18, 209
NdeII GATC 8 cut(s) 73, 172, 300, 332, 354, 441, 558, 679
NgoMIV GCCGGC 1 cut(s) 589
NlaIII CATG 5 cut(s) 22, 213, 569, 634, 755
NlaIV GGNNCC 1 cut(s) 588
NspI RCATGY 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 590
PdiI GCCGGC 1 cut(s) 591
PfeI GAWTC 5 cut(s) 385, 421, 433, 691, 709
PkrI GCNGC 2 cut(s) 25, 105
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 704
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 3 cut(s) 73, 172, 332
RsaI GTAC 2 cut(s) 416, 635
RsaNI GTAC 2 cut(s) 415, 634
SaqAI TTAA 2 cut(s) 219, 781
SatI GCNGC 2 cut(s) 24, 104
Sau3AI GATC 8 cut(s) 73, 172, 300, 332, 354, 441, 558, 679
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 185, 706
SduI GDGCHC 2 cut(s) 229, 584
SfaNI GCATC 2 cut(s) 4, 601
SfcI CTRYAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 264, 503
SsiI CCGC 1 cut(s) 103
SspMI CTAG 5 cut(s) 144, 170, 189, 687, 723
StyD4I CCNGG 2 cut(s) 183, 704
StyI CCWWGG 3 cut(s) 18, 209, 637
TaaI ACNGT 2 cut(s) 224, 579
TaiI ACGT 1 cut(s) 762
TasI AATT 2 cut(s) 264, 503
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 5 cut(s) 385, 421, 433, 691, 709
Tru1I TTAA 2 cut(s) 219, 781
Tru9I TTAA 2 cut(s) 219, 781
TscAI CASTG 2 cut(s) 54, 145
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 615, 674
TspRI CASTG 2 cut(s) 54, 145
XapI RAATTY 1 cut(s) 503
XceI RCATGY 1 cut(s) 634
XspI CTAG 5 cut(s) 144, 170, 189, 687, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.