ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 479 |
| Acc36I | ACCTGC | 1 cut(s) | 439 |
| Acc65I | GGTACC | 1 cut(s) | 298 |
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AccIII | TCCGGA | 1 cut(s) | 507 |
| AcsI | RAATTY | 1 cut(s) | 431 |
| AcuI | CTGAAG | 1 cut(s) | 534 |
| AcvI | CACGTG | 1 cut(s) | 440 |
| AfaI | GTAC | 3 cut(s) | 300, 428, 453 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 76, 215 |
| AflIII | ACRYGT | 1 cut(s) | 223 |
| AgsI | TTSAA | 3 cut(s) | 58, 272, 365 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| AleI | CACNNNNGTG | 1 cut(s) | 122 |
| AluBI | AGCT | 2 cut(s) | 54, 260 |
| AluI | AGCT | 2 cut(s) | 54, 260 |
| Alw21I | GWGCWC | 1 cut(s) | 84 |
| Alw26I | GTCTC | 1 cut(s) | 282 |
| Aor13HI | TCCGGA | 1 cut(s) | 507 |
| ApoI | RAATTY | 1 cut(s) | 431 |
| Asp718I | GGTACC | 1 cut(s) | 298 |
| AspS9I | GGNCC | 1 cut(s) | 335 |
| AsuHPI | GGTGA | 2 cut(s) | 109, 128 |
| AvaII | GGWCC | 1 cut(s) | 335 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| BanII | GRGCYC | 1 cut(s) | 522 |
| BbrPI | CACGTG | 1 cut(s) | 440 |
| BbsI | GAAGAC | 2 cut(s) | 162, 240 |
| Bbv12I | GWGCWC | 1 cut(s) | 84 |
| BccI | CCATC | 3 cut(s) | 141, 343, 512 |
| BceAI | ACGGC | 1 cut(s) | 151 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BcoDI | GTCTC | 1 cut(s) | 282 |
| BfuAI | ACCTGC | 1 cut(s) | 439 |
| Bme1390I | CCNGG | 1 cut(s) | 14 |
| Bme18I | GGWCC | 1 cut(s) | 335 |
| BmgT120I | GGNCC | 1 cut(s) | 335 |
| BmiI | GGNNCC | 2 cut(s) | 300, 337 |
| BmrFI | CCNGG | 1 cut(s) | 14 |
| BmsI | GCATC | 1 cut(s) | 490 |
| BpiI | GAAGAC | 2 cut(s) | 162, 240 |
| Bpu10I | CCTNAGC | 1 cut(s) | 261 |
| BpuEI | CTTGAG | 1 cut(s) | 339 |
| BsaAI | YACGTR | 1 cut(s) | 440 |
| BsaJI | CCNNGG | 1 cut(s) | 13 |
| BsaWI | WCCGGW | 2 cut(s) | 76, 507 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 76, 215 |
| Bse1I | ACTGG | 1 cut(s) | 282 |
| Bse3DI | GCAATG | 1 cut(s) | 467 |
| BseAI | TCCGGA | 1 cut(s) | 507 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseDI | CCNNGG | 1 cut(s) | 13 |
| BseGI | GGATG | 3 cut(s) | 23, 424, 504 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 76, 215 |
| BseMI | GCAATG | 1 cut(s) | 467 |
| BseMII | CTCAG | 1 cut(s) | 275 |
| BseNI | ACTGG | 1 cut(s) | 282 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BsiHKAI | GWGCWC | 1 cut(s) | 84 |
| BsiSI | CCGG | 2 cut(s) | 77, 508 |
| BslFI | GGGAC | 1 cut(s) | 30 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 76, 215 |
| BsmAI | GTCTC | 1 cut(s) | 282 |
| BsmFI | GGGAC | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 2 cut(s) | 84, 522 |
| Bsp13I | TCCGGA | 1 cut(s) | 507 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspEI | TCCGGA | 1 cut(s) | 507 |
| BspLI | GGNNCC | 2 cut(s) | 300, 337 |
| BspMI | ACCTGC | 1 cut(s) | 439 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BsrDI | GCAATG | 1 cut(s) | 467 |
| BsrI | ACTGG | 1 cut(s) | 282 |
| BssECI | CCNNGG | 1 cut(s) | 13 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| BstBAI | YACGTR | 1 cut(s) | 440 |
| BstC8I | GCNNGC | 1 cut(s) | 372 |
| BstDEI | CTNAG | 2 cut(s) | 156, 261 |
| BstF5I | GGATG | 3 cut(s) | 23, 424, 504 |
| BstMAI | GTCTC | 1 cut(s) | 282 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstNSI | RCATGY | 2 cut(s) | 227, 448 |
| BstSCI | CCNGG | 1 cut(s) | 12 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 240 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 44 |
| BtsCI | GGATG | 3 cut(s) | 23, 424, 504 |
| BveI | ACCTGC | 1 cut(s) | 439 |
| Cac8I | GCNNGC | 1 cut(s) | 372 |
| Cfr13I | GGNCC | 1 cut(s) | 335 |
| Csp6I | GTAC | 3 cut(s) | 299, 427, 452 |
| CviAII | CATG | 4 cut(s) | 215, 224, 327, 445 |
| CviJI | RGCY | 7 cut(s) | 5, 48, 54, 69, 260, 353, 520 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 48, 54, 69, 260, 353, 520 |
| CviQI | GTAC | 3 cut(s) | 299, 427, 452 |
| DdeI | CTNAG | 2 cut(s) | 156, 261 |
| Eco24I | GRGCYC | 1 cut(s) | 522 |
| Eco32I | GATATC | 1 cut(s) | 547 |
| Eco47I | GGWCC | 1 cut(s) | 335 |
| Eco57I | CTGAAG | 1 cut(s) | 534 |
| Eco72I | CACGTG | 1 cut(s) | 440 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| EcoRV | GATATC | 1 cut(s) | 547 |
| EcoT38I | GRGCYC | 1 cut(s) | 522 |
| FaeI | CATG | 4 cut(s) | 218, 227, 330, 448 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 225, 257 |
| FaqI | GGGAC | 1 cut(s) | 30 |
| FatI | CATG | 4 cut(s) | 214, 223, 326, 444 |
| FokI | GGATG | 3 cut(s) | 10, 431, 491 |
| FriOI | GRGCYC | 1 cut(s) | 522 |
| HapII | CCGG | 2 cut(s) | 77, 508 |
| Hin1II | CATG | 4 cut(s) | 218, 227, 330, 448 |
| HpaII | CCGG | 2 cut(s) | 77, 508 |
| HphI | GGTGA | 2 cut(s) | 109, 128 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 335 |
| Hpy188I | TCNGA | 1 cut(s) | 230 |
| Hpy188III | TCNNGA | 5 cut(s) | 263, 272, 356, 485, 508 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 335 |
| HpyAV | CCTTC | 1 cut(s) | 509 |
| HpyCH4IV | ACGT | 2 cut(s) | 393, 439 |
| HpyCH4V | TGCA | 4 cut(s) | 204, 323, 437, 448 |
| HpyF3I | CTNAG | 2 cut(s) | 156, 261 |
| HpySE526I | ACGT | 2 cut(s) | 393, 439 |
| Hsp92II | CATG | 4 cut(s) | 218, 227, 330, 448 |
| Kpn2I | TCCGGA | 1 cut(s) | 507 |
| KpnI | GGTACC | 1 cut(s) | 302 |
| LpnPI | CCDG | 9 cut(s) | 26, 90, 120, 248, 263, 352, 434, 498, 521 |
| LweI | GCATC | 1 cut(s) | 490 |
| MaeII | ACGT | 2 cut(s) | 393, 439 |
| MaeIII | GTNAC | 1 cut(s) | 440 |
| MboII | GAAGA | 2 cut(s) | 162, 245 |
| MhlI | GDGCHC | 2 cut(s) | 84, 522 |
| MluCI | AATT | 2 cut(s) | 431, 560 |
| MmeI | TCCRAC | 1 cut(s) | 118 |
| MnlI | CCTC | 6 cut(s) | 20, 130, 222, 259, 449, 534 |
| MroI | TCCGGA | 1 cut(s) | 507 |
| MseI | TTAA | 1 cut(s) | 405 |
| MslI | CAYNNNNRTG | 2 cut(s) | 42, 122 |
| MspI | CCGG | 2 cut(s) | 77, 508 |
| MspR9I | CCNGG | 1 cut(s) | 14 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| NlaIII | CATG | 4 cut(s) | 218, 227, 330, 448 |
| NlaIV | GGNNCC | 2 cut(s) | 300, 337 |
| NmuCI | GTSAC | 1 cut(s) | 440 |
| NspI | RCATGY | 2 cut(s) | 227, 448 |
| OliI | CACNNNNGTG | 1 cut(s) | 122 |
| PciI | ACATGT | 1 cut(s) | 223 |
| PmaCI | CACGTG | 1 cut(s) | 440 |
| PmlI | CACGTG | 1 cut(s) | 440 |
| Ppu21I | YACGTR | 1 cut(s) | 440 |
| PscI | ACATGT | 1 cut(s) | 223 |
| PsiI | TTATAA | 1 cut(s) | 479 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspCI | CACGTG | 1 cut(s) | 440 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| PspN4I | GGNNCC | 2 cut(s) | 300, 337 |
| PspPI | GGNCC | 1 cut(s) | 335 |
| RsaI | GTAC | 3 cut(s) | 300, 428, 453 |
| RsaNI | GTAC | 3 cut(s) | 299, 427, 452 |
| RseI | CAYNNNNRTG | 2 cut(s) | 42, 122 |
| SaqAI | TTAA | 1 cut(s) | 405 |
| Sau96I | GGNCC | 1 cut(s) | 335 |
| ScrFI | CCNGG | 1 cut(s) | 14 |
| SduI | GDGCHC | 2 cut(s) | 84, 522 |
| SfaNI | GCATC | 1 cut(s) | 490 |
| SinI | GGWCC | 1 cut(s) | 335 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 42, 122 |
| SmlI | CTYRAG | 1 cut(s) | 354 |
| SmoI | CTYRAG | 1 cut(s) | 354 |
| Sse9I | AATT | 2 cut(s) | 431, 560 |
| StyD4I | CCNGG | 1 cut(s) | 12 |
| TaiI | ACGT | 2 cut(s) | 396, 442 |
| TasI | AATT | 2 cut(s) | 431, 560 |
| Tru1I | TTAA | 1 cut(s) | 405 |
| Tru9I | TTAA | 1 cut(s) | 405 |
| TseFI | GTSAC | 1 cut(s) | 440 |
| Tsp45I | GTSAC | 1 cut(s) | 440 |
| TspGWI | ACGGA | 2 cut(s) | 112, 431 |
| VpaK11BI | GGWCC | 1 cut(s) | 335 |
| XapI | RAATTY | 1 cut(s) | 431 |
| XceI | RCATGY | 2 cut(s) | 227, 448 |