Rmu_sc0006317.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006317.1
OG0000187
Physical Location & Seq
Reverse (-)
26182 .. 27000
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006317.1_g000007.1.cds

Sequence Viewer

Length: 567 bp
atgagctctgttgatgccatggctgctagaatagcctcctcatttgccatcactgagggtaagagacagatcgatatgcgttcgactcaaggccagggtttgagacaatccaatgttttcttagaggggaagcttctcaccactcgggagtataagagcaaatcttttatggggatgttctgcaacgcatggagaatcaatggatcgctgcaagtagaggaagttgagggacagagggtgctgtttatgctgtcggatcctgcatatagggttagcgtttggcgcagagcatcatggggctacaaccatgctccggtggctctcgccttctatgatgggatcatgtcagtggataaggttcctttgactatggcatcatactggattaccctgcaaaggatcccgccagccttccgctctgaaagggatgatgacgaggctgagcaaacaatcttgggttcgcagcatacggctccggtggtgcagactgataatcttcctctgcagaataacacgacagcgtcgtgttctgggattgaggctggaaacatttcggctaccatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

188

Amino Acids

20.89

Weight (kDa)

6.12

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 417
AciI CCGC 2 cut(s) 404, 415
AclWI GGATC 6 cut(s) 211, 251, 264, 347, 394, 407
AfiI CCNNNNNNNGG 2 cut(s) 313, 396
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 2 cut(s) 6, 133
AluI AGCT 2 cut(s) 6, 133
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 58, 97
AlwI GGATC 6 cut(s) 211, 251, 264, 347, 394, 407
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 3 cut(s) 23, 208, 463
Asp700I GAANNNNTTC 1 cut(s) 550
AspLEI GCGC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 144
BamHI GGATCC 2 cut(s) 256, 399
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 10, 195, 475
BccI CCATC 2 cut(s) 56, 329
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 58, 97
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 503
BisI GCNGC 3 cut(s) 24, 209, 464
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 3 cut(s) 25, 210, 465
Bme1390I CCNGG 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 144
BmiI GGNNCC 4 cut(s) 258, 360, 401, 474
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 3 cut(s) 4, 299, 383
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 18, 94
BsaWI WCCGGW 2 cut(s) 313, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 396
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 95
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 18, 94
BseGI GGATG 2 cut(s) 180, 433
BseLI CCNNNNNNNGG 2 cut(s) 313, 396
BseMII CTCAG 2 cut(s) 45, 432
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 10, 195, 475
BsgI GTGCAG 1 cut(s) 503
BshFI GGCC 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 314, 476
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 313, 396
BsmAI GTCTC 2 cut(s) 58, 97
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 69, 203, 256, 339, 399
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 2 cut(s) 404, 415
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 46, 433
BspDI ATCGAT 1 cut(s) 72
BspLI GGNNCC 4 cut(s) 258, 360, 401, 474
BspMAI CTGCAG 1 cut(s) 507
BspPI GGATC 6 cut(s) 211, 251, 264, 347, 394, 407
BsrBI CCGCTC 1 cut(s) 417
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 18, 94
BssMI GATC 5 cut(s) 69, 203, 256, 339, 399
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 3 cut(s) 54, 121, 441
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 180, 433
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 5 cut(s) 72, 206, 259, 342, 402
BstMAI GTCTC 2 cut(s) 58, 97
BstMBI GATC 5 cut(s) 69, 203, 256, 339, 399
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 247, 282, 317
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 10, 195, 475
BstX2I RGATCY 2 cut(s) 256, 399
BstYI RGATCY 2 cut(s) 256, 399
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 180, 433
BtsIMutI CAGTG 2 cut(s) 51, 354
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 1 cut(s) 510
CviAII CATG 6 cut(s) 19, 189, 294, 308, 343, 562
DdeI CTNAG 3 cut(s) 54, 121, 441
DpnI GATC 5 cut(s) 71, 205, 258, 341, 401
DpnII GATC 5 cut(s) 69, 203, 256, 339, 399
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 6 cut(s) 22, 192, 297, 311, 346, 565
FaqI GGGAC 1 cut(s) 243
FatI CATG 6 cut(s) 18, 188, 293, 307, 342, 561
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 24, 209, 464
FokI GGATG 2 cut(s) 187, 440
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 24, 209, 464
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 284
GluI GCNGC 3 cut(s) 24, 209, 464
HaeIII GGCC 1 cut(s) 93
HapII CCGG 2 cut(s) 314, 476
HgaI GACGC 1 cut(s) 510
HhaI GCGC 1 cut(s) 285
Hin1II CATG 6 cut(s) 22, 192, 297, 311, 346, 565
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 85, 195
HpaII CCGG 2 cut(s) 314, 476
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 256, 421
Hpy188III TCNNGA 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 2 cut(s) 337, 421
HpyCH4V TGCA 6 cut(s) 183, 211, 263, 394, 484, 505
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 247, 282, 317
HpyF3I CTNAG 3 cut(s) 54, 121, 441
Hsp92II CATG 6 cut(s) 22, 192, 297, 311, 346, 565
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 5 cut(s) 69, 203, 256, 339, 399
LmnI GCTCC 2 cut(s) 316, 478
Lsp1109I GCAGC 3 cut(s) 10, 195, 475
LweI GCATC 3 cut(s) 4, 299, 383
MaeI CTAG 1 cut(s) 27
MalI GATC 5 cut(s) 71, 205, 258, 341, 401
MbiI CCGCTC 1 cut(s) 417
MboI GATC 5 cut(s) 69, 203, 256, 339, 399
MboII GAAGA 1 cut(s) 488
MflI RGATCY 2 cut(s) 256, 399
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 550
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 2 cut(s) 314, 476
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 247, 282, 317
NcoI CCATGG 1 cut(s) 18
NdeII GATC 5 cut(s) 69, 203, 256, 339, 399
NlaIII CATG 6 cut(s) 22, 192, 297, 311, 346, 565
NlaIV GGNNCC 4 cut(s) 258, 360, 401, 474
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 1 cut(s) 195
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 3 cut(s) 25, 210, 465
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 4 cut(s) 258, 360, 401, 474
PstI CTGCAG 1 cut(s) 507
PsuI RGATCY 2 cut(s) 256, 399
PsyI GACNNNGTC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 3 cut(s) 24, 209, 464
Sau3AI GATC 5 cut(s) 69, 203, 256, 339, 399
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 8, 135, 360
SfaNI GCATC 3 cut(s) 4, 299, 383
SfcI CTRYAG 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SsiI CCGC 2 cut(s) 404, 415
SspMI CTAG 1 cut(s) 27
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 2 cut(s) 72, 83
TfiI GAWTC 1 cut(s) 195
TscAI CASTG 2 cut(s) 58, 354
TseI GCWGC 3 cut(s) 23, 208, 463
TspRI CASTG 2 cut(s) 58, 354
Tth111I GACNNNGTC 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.