Rmu_sc0007115.1_g000002

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007115.1
OG0000187
Physical Location & Seq
Reverse (-)
4777 .. 5875
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007115.1_g000002.1.cds

Sequence Viewer

Length: 939 bp
atgtttcggaatgaatggagggtacacggatcgttgcgtgtggaggaagcggaggggcaaagggttcttgtcactctgtctgatgctacaattcagaatcagatctggaagggaggtccatggggttataatcacgctctaattgccctagcttactacgatggtgtggttgccattgaatcggtctccttcaacacatcgtcatactggatcactttgcaaggcatcccccctgcgttccgttccgaaagagtgatgactatgattggctttactcttggtctcccatgctcggggcctcctttggaagagaatgatgaggcagaacgcacggtcctgggtgcgtcacaggcgagtcaccttgctgcaccggagccgcagtctgctgggcaacttatctcaacctcaagttgggcttcaactagcacagtgaatgcaggagttcgggctagggtttctttgggtggcaaggtcgttgttttccgtattgtgcttcccaactctatgttggagcgactactccataattcggcactgttgatgcgtcgacctcggcatcaagctaagatacgagaactgcctgagatgatggctatacctgacagcatcataggaaagaggagactgagggaggatgataccattattatatctccaaagaagcttaaactgagccttgccattggaaaaagaaatttgaatctggaatcggagcaactaggtttagtaccggtgctgcaaactgaggaacagcccctccaggtaaagagaaagagggggagacctgtaggtagtaagaacaaattatcctatggggaaaagaagaaagcaaagcagggggacgagaccagggtaaagaaaaagtttctccccaagcttgacaaggcaagtggcagatcaggctcccatccgaaagggaaggagctaactcttttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

312

Amino Acids

34.58

Weight (kDa)

10.05

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000187)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20170 FvH4_4g06831
rosa_chinensis RchiOBHm_Chr1g0321991 RchiOBHm_Chr2g0161811
rosa_laevigata RLG00000015375 RLG00000018377
rosa_multiflora Rmu_co8011754.1_g000001 Rmu_co8019986.1_g000001 Rmu_co8067766.1_g000001 Rmu_co8156128.1_g000001 Rmu_co8219154.1_g000003 Rmu_co8297235.1_g000001 Rmu_co8345223.1_g000001 Rmu_co8364775.1_g000001 Rmu_co8465075.1_g000001 Rmu_sc0000007.1_g000002 Rmu_sc0000054.1_g000015 Rmu_sc0000054.1_g000023 Rmu_sc0000145.1_g000010 Rmu_sc0000166.1_g000006 Rmu_sc0000218.1_g000012 Rmu_sc0000339.1_g000008 Rmu_sc0000342.1_g000015 Rmu_sc0000464.1_g000008 Rmu_sc0000620.1_g000003 Rmu_sc0000638.1_g000017 Rmu_sc0000890.1_g000007 Rmu_sc0000894.1_g000024 Rmu_sc0000909.1_g000010 Rmu_sc0000928.1_g000020 Rmu_sc0000977.1_g000007 Rmu_sc0001022.1_g000003 Rmu_sc0001035.1_g000037 Rmu_sc0001060.1_g000008 Rmu_sc0001168.1_g000005 Rmu_sc0001173.1_g000022 Rmu_sc0001179.1_g000016 Rmu_sc0001408.1_g000003 Rmu_sc0001455.1_g000005 Rmu_sc0001484.1_g000008 Rmu_sc0001585.1_g000010 Rmu_sc0001702.1_g000030 Rmu_sc0001755.1_g000063 Rmu_sc0001903.1_g000009 Rmu_sc0002099.1_g000001 Rmu_sc0002142.1_g000012 Rmu_sc0002158.1_g000014 Rmu_sc0002307.1_g000009 Rmu_sc0002358.1_g000013 Rmu_sc0002421.1_g000002 Rmu_sc0002426.1_g000003 Rmu_sc0002438.1_g000001 Rmu_sc0002461.1_g000001 Rmu_sc0002508.1_g000003 Rmu_sc0002532.1_g000056 Rmu_sc0002583.1_g000002 Rmu_sc0002927.1_g000033 Rmu_sc0003033.1_g000040 Rmu_sc0003271.1_g000006 Rmu_sc0003381.1_g000006 Rmu_sc0003507.1_g000007 Rmu_sc0003578.1_g000003 Rmu_sc0003693.1_g000004 Rmu_sc0003693.1_g000005 Rmu_sc0003704.1_g000003 Rmu_sc0003840.1_g000002 Rmu_sc0004084.1_g000026 Rmu_sc0004193.1_g000007 Rmu_sc0004234.1_g000033 Rmu_sc0004235.1_g000025 Rmu_sc0004435.1_g000006 Rmu_sc0004727.1_g000003 Rmu_sc0004741.1_g000001 Rmu_sc0004926.1_g000004 Rmu_sc0005365.1_g000001 Rmu_sc0005392.1_g000007 Rmu_sc0005415.1_g000001 Rmu_sc0005539.1_g000007 Rmu_sc0005708.1_g000017 Rmu_sc0006317.1_g000007 Rmu_sc0006453.1_g000054 Rmu_sc0006536.1_g000004 Rmu_sc0006740.1_g000022 Rmu_sc0006763.1_g000012 Rmu_sc0007115.1_g000002 Rmu_sc0007115.1_g000010 Rmu_sc0007129.1_g000017 Rmu_sc0007131.1_g000010 Rmu_sc0008373.1_g000008 Rmu_sc0009005.1_g000008 Rmu_sc0009252.1_g000007 Rmu_sc0009599.1_g000022 Rmu_sc0009785.1_g000027 Rmu_sc0009891.1_g000003 Rmu_sc0010099.1_g000010 Rmu_sc0010266.1_g000008 Rmu_sc0010334.1_g000003 Rmu_sc0010381.1_g000001 Rmu_sc0010496.1_g000003 Rmu_sc0010496.1_g000004 Rmu_sc0010546.1_g000003 Rmu_sc0011482.1_g000006 Rmu_sc0011875.1_g000010 Rmu_sc0011917.1_g000006 Rmu_sc0012293.1_g000004 Rmu_sc0012847.1_g000003 Rmu_sc0013773.1_g000001 Rmu_sc0016060.1_g000003 Rmu_sc0016170.1_g000013 Rmu_sc0016393.1_g000002 Rmu_sc0017589.1_g000001 Rmu_sc0017786.1_g000005 Rmu_sc0018326.1_g000002 Rmu_sc0020760.1_g000001 Rmu_sc0021262.1_g000003 Rmu_sc0023851.1_g000002 Rmu_sc0024044.1_g000001 Rmu_sc0026820.1_g000001 Rmu_sc0032306.1_g000001 Rmu_sc0035666.1_g000001 Rmu_sc0036881.1_g000001 Rmu_sc0037030.1_g000001 Rmu_sc0037158.1_g000001 Rmu_ssc0000016.1_g000002 Rmu_ssc0000044.1_g000012 Rmu_ssc0000044.1_g000014 Rmu_ssc0000050.1_g000064 Rmu_ssc0000064.1_g000022 Rmu_ssc0000154.1_g000037 Rmu_ssc0000178.1_g000013 Rmu_ssc0000217.1_g000022 Rmu_ssc0000392.1_g000004
rosa_roxburghii Rroxscaffold_3G00242000 Rroxscaffold_3G00242530 Rroxscaffold_6G00406010
rosa_rugosa Rorug01G0062000 Rorug02G0224000 Rorug02G0262900 Rorug02G0263000 Rorug02G0358900 Rorug02G0360500 Rorug02G0378500.1 Rorug02G0378600 Rorug02G0394700 Rorug03G0122900 Rorug03G0254600 Rorug03G0254700 Rorug03G0254800 Rorug04G0042200.1 Rorug04G0378100 Rorug05G0053400 Rorug05G0238600 Rorug05G0364500 Rorug05G0562000 Rorug06G0089300 Rorug06G0089400 Rorug06G0145700 Rorug07G0111600 Rorug07G0229500.1 Rorug07G0287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AccI GTMKAC 1 cut(s) 547
AciI CCGC 2 cut(s) 50, 377
AclWI GGATC 2 cut(s) 37, 218
AcsI RAATTY 1 cut(s) 694
AfaI GTAC 2 cut(s) 24, 729
AfiI CCNNNNNNNGG 4 cut(s) 292, 293, 411, 529
AgeI ACCGGT 1 cut(s) 730
AgsI TTSAA 4 cut(s) 179, 193, 420, 700
AjnI CCWGG 3 cut(s) 336, 759, 848
AloI GAACNNNNNNTCC 6 cut(s) 318, 350, 741, 773, 791, 823
AluBI AGCT 5 cut(s) 152, 563, 664, 877, 925
AluI AGCT 5 cut(s) 152, 563, 664, 877, 925
Alw26I GTCTC 5 cut(s) 190, 287, 616, 775, 839
AlwI GGATC 2 cut(s) 37, 218
Ama87I CYCGRG 1 cut(s) 292
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 365, 736
ApoI RAATTY 1 cut(s) 694
AsiGI ACCGGT 1 cut(s) 730
AspS9I GGNCC 3 cut(s) 116, 296, 334
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 292
AvaII GGWCC 2 cut(s) 116, 334
BbvI GCAGC 2 cut(s) 352, 723
BccI CCATC 3 cut(s) 155, 583, 915
BciT130I CCWGG 3 cut(s) 338, 761, 850
BcoDI GTCTC 5 cut(s) 190, 287, 616, 775, 839
BfaI CTAG 4 cut(s) 149, 423, 450, 719
BfmI CTRYAG 1 cut(s) 786
BglII AGATCT 1 cut(s) 102
BisI GCNGC 3 cut(s) 366, 377, 737
BlsI GCNGC 3 cut(s) 367, 378, 738
Bme1390I CCNGG 3 cut(s) 338, 761, 850
Bme18I GGWCC 2 cut(s) 116, 334
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 3 cut(s) 116, 296, 334
BmiI GGNNCC 3 cut(s) 297, 375, 904
BmrFI CCNGG 3 cut(s) 338, 761, 850
BmsI GCATC 5 cut(s) 73, 234, 531, 565, 615
BpmI CTGGAG 1 cut(s) 743
BpuEI CTTGAG 1 cut(s) 391
BsaI GGTCTC 4 cut(s) 190, 287, 775, 839
BsaJI CCNNGG 4 cut(s) 119, 337, 551, 849
BsaWI WCCGGW 2 cut(s) 370, 730
BsaXI ACNNNNNCTCC 4 cut(s) 365, 395, 741, 771
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 293, 411, 529
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 3 cut(s) 338, 761, 850
BseDI CCNNGG 4 cut(s) 119, 337, 551, 849
BseGI GGATG 3 cut(s) 225, 640, 907
BseLI CCNNNNNNNGG 4 cut(s) 292, 293, 411, 529
BseMII CTCAG 4 cut(s) 573, 617, 662, 735
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 634
BseXI GCAGC 2 cut(s) 352, 723
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 298
BshTI ACCGGT 1 cut(s) 730
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 2 cut(s) 371, 731
BslFI GGGAC 1 cut(s) 854
BslI CCNNNNNNNGG 4 cut(s) 292, 293, 411, 529
BsmAI GTCTC 5 cut(s) 190, 287, 616, 775, 839
BsmFI GGGAC 1 cut(s) 854
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 1 cut(s) 298
Bso31I GGTCTC 4 cut(s) 190, 287, 775, 839
BsoBI CYCGRG 1 cut(s) 292
Bsp143I GATC 4 cut(s) 29, 102, 210, 896
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 2 cut(s) 50, 377
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 4 cut(s) 574, 618, 663, 736
BspLI GGNNCC 3 cut(s) 297, 375, 904
BspPI GGATC 2 cut(s) 37, 218
BspTNI GGTCTC 4 cut(s) 190, 287, 775, 839
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 4 cut(s) 119, 337, 551, 849
BssMI GATC 4 cut(s) 29, 102, 210, 896
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 3 cut(s) 338, 761, 850
Bst4CI ACNGT 3 cut(s) 334, 430, 537
Bst6I CTCTTC 1 cut(s) 303
BstDEI CTNAG 5 cut(s) 564, 582, 626, 671, 744
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 3 cut(s) 225, 640, 907
BstKTI GATC 4 cut(s) 32, 105, 213, 899
BstMAI GTCTC 5 cut(s) 190, 287, 616, 775, 839
BstMBI GATC 4 cut(s) 29, 102, 210, 896
BstMWI GCNNNNNNNGC 3 cut(s) 143, 350, 900
BstNI CCWGG 3 cut(s) 338, 761, 850
BstSCI CCNGG 3 cut(s) 336, 759, 848
BstSFI CTRYAG 1 cut(s) 786
BstV1I GCAGC 2 cut(s) 352, 723
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 3 cut(s) 225, 640, 907
BtsIMutI CAGTG 2 cut(s) 435, 533
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 3 cut(s) 116, 296, 334
CseI GACGC 2 cut(s) 333, 533
Csp6I GTAC 2 cut(s) 23, 728
CspAI ACCGGT 1 cut(s) 730
CspCI CAANNNNNGTGG 2 cut(s) 871, 906
CviAII CATG 2 cut(s) 120, 288
CviQI GTAC 2 cut(s) 23, 728
DdeI CTNAG 5 cut(s) 564, 582, 626, 671, 744
DpnI GATC 4 cut(s) 31, 104, 212, 898
DpnII GATC 4 cut(s) 29, 102, 210, 896
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 119
Eco31I GGTCTC 4 cut(s) 190, 287, 775, 839
Eco47I GGWCC 2 cut(s) 116, 334
Eco88I CYCGRG 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 3 cut(s) 336, 759, 848
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 2 cut(s) 123, 291
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FaqI GGGAC 1 cut(s) 854
FatI CATG 2 cut(s) 119, 287
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 366, 377, 737
FokI GGATG 3 cut(s) 212, 647, 894
Fsp4HI GCNGC 3 cut(s) 366, 377, 737
FspBI CTAG 4 cut(s) 149, 423, 450, 719
GluI GCNGC 3 cut(s) 366, 377, 737
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 743
HaeIII GGCC 1 cut(s) 298
HapII CCGG 2 cut(s) 371, 731
HgaI GACGC 2 cut(s) 333, 533
Hin1II CATG 2 cut(s) 123, 291
HincII GTYRAC 1 cut(s) 548
HindII GTYRAC 1 cut(s) 548
HindIII AAGCTT 2 cut(s) 662, 875
HinfI GANTC 5 cut(s) 97, 179, 355, 700, 707
HpaII CCGG 2 cut(s) 371, 731
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 25, 548
Hpy188I TCNGA 7 cut(s) 9, 82, 96, 102, 247, 712, 912
Hpy188III TCNNGA 2 cut(s) 106, 704
Hpy8I GTNNAC 2 cut(s) 25, 548
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 3 cut(s) 103, 199, 913
HpyCH4III ACNGT 3 cut(s) 334, 430, 537
HpyCH4V TGCA 4 cut(s) 220, 368, 437, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 350, 900
HpyF3I CTNAG 5 cut(s) 564, 582, 626, 671, 744
Hsp92II CATG 2 cut(s) 123, 291
Kzo9I GATC 4 cut(s) 29, 102, 210, 896
LmnI GCTCC 5 cut(s) 373, 511, 712, 908, 922
Lsp1109I GCAGC 2 cut(s) 352, 723
LweI GCATC 5 cut(s) 73, 234, 531, 565, 615
MaeI CTAG 4 cut(s) 149, 423, 450, 719
MaeIII GTNAC 3 cut(s) 70, 345, 356
MalI GATC 4 cut(s) 31, 104, 212, 898
MboI GATC 4 cut(s) 29, 102, 210, 896
MboII GAAGA 2 cut(s) 320, 835
MflI RGATCY 1 cut(s) 102
MluCI AATT 5 cut(s) 90, 141, 526, 694, 803
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 489
MseI TTAA 1 cut(s) 666
MspI CCGG 2 cut(s) 371, 731
MspR9I CCNGG 3 cut(s) 338, 761, 850
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 3 cut(s) 338, 761, 850
MwoI GCNNNNNNNGC 3 cut(s) 143, 350, 900
NcoI CCATGG 1 cut(s) 119
NdeII GATC 4 cut(s) 29, 102, 210, 896
NlaIII CATG 2 cut(s) 123, 291
NlaIV GGNNCC 3 cut(s) 297, 375, 904
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 3 cut(s) 70, 345, 356
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 4 cut(s) 97, 179, 700, 707
PinAI ACCGGT 1 cut(s) 730
PkrI GCNGC 3 cut(s) 367, 378, 738
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
PsiI TTATAA 1 cut(s) 129
Psp6I CCWGG 3 cut(s) 336, 759, 848
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 3 cut(s) 336, 759, 848
PspN4I GGNNCC 3 cut(s) 297, 375, 904
PspPI GGNCC 3 cut(s) 116, 296, 334
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 2 cut(s) 24, 729
RsaNI GTAC 2 cut(s) 23, 728
SalI GTCGAC 1 cut(s) 546
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 3 cut(s) 366, 377, 737
Sau3AI GATC 4 cut(s) 29, 102, 210, 896
Sau96I GGNCC 3 cut(s) 116, 296, 334
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 3 cut(s) 338, 761, 850
SfaNI GCATC 5 cut(s) 73, 234, 531, 565, 615
SfcI CTRYAG 1 cut(s) 786
SinI GGWCC 2 cut(s) 116, 334
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 5 cut(s) 90, 141, 526, 694, 803
SsiI CCGC 2 cut(s) 50, 377
SspMI CTAG 4 cut(s) 149, 423, 450, 719
StyD4I CCNGG 3 cut(s) 336, 759, 848
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 3 cut(s) 334, 430, 537
TaqI TCGA 1 cut(s) 547
TaqII GACCGA 1 cut(s) 172
TasI AATT 5 cut(s) 90, 141, 526, 694, 803
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 4 cut(s) 97, 179, 700, 707
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 2 cut(s) 435, 540
TseFI GTSAC 3 cut(s) 70, 345, 356
TseI GCWGC 2 cut(s) 365, 736
Tsp45I GTSAC 3 cut(s) 70, 345, 356
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 3 cut(s) 42, 230, 473
TspRI CASTG 2 cut(s) 435, 540
VpaK11BI GGWCC 2 cut(s) 116, 334
XapI RAATTY 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 4 cut(s) 149, 423, 450, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.